Cp4.1LG03g04490 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g04490
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	F-box/WD repeat-containing protein 4
Location	Cp4.1LG03: 5509157 .. 5511765 (+)
RNA-Seq Expression	Cp4.1LG03g04490
Synteny	Cp4.1LG03g04490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCGCCTACCCGCTTACTACCCGTCTTCCACATCCATTTGCATCAAATCCATTCTGCAAACTTCCAGACAGACCTTTTTCTCTCTCATCTCTTTCTCTCTCCTCCAATTTCTATTTGATAGGCCCCAAATTCCCCGCTCATCAACCCTAGAACTACTCAATTTCCTCGAATTTTCCCGGTGACTCTGGAAATCCTTCGTTTCTGTGAACGATGTTGCAGTTCTTCTTCACGGTGGCTTTCTCTGCAGTACCTTTGACTCTCTACGTTCCGCCTCTCCGGAGCTTCAATCTCTTCGTCGAGACCATGGAGGAGATACTTCGCGAGTCCAGAACGTATACCAATCGGGTTTATCCGCGGGCTCGGCATGTTTGGTTTAGGGTTTTGGATTGTGTTCTTTGCAGCACCAGGTAGATGATTGTTTTTCTTTTTCTAGGTTTCAAAGTTCACGACTCCGATCTCTCTGTATATACCCTTCCTTCGATTCTCTCTTTTGTTTGATAAGATTTGGATGAGTGTGGTTGTGGTGCTGATGATACTGTTCTTGCGGGATTCTGTTGTTAATTGCTGAATGTAACATGTAAGAGGAGGATATGTTTCGAGTTAATTTTCAGGAAAATAAAGAGCTGATGTTCACGCTAATATGTGTACTCTGATGTTCTGTTTCTCTCCTTCCATTCGATTCTCTTTTGTTTTGCTCTGAGTTATGCTTATGGATATTTAATTCAGAATCTGGGGGGCGGAATTGCTTCAACCTTCTCCCTTATGACTTCTGATATCTGCTTTAGCTAGTAATTTGATGTTTGTTTGTTGCTTCCCCCCCAATTCAAGCGAACTTAATTGATTGCAAGGCCAAAATGGCAGCCCTAGATTCATATATTCATTGTATTTGAGAGGGTTTGTGAACCGAGCATTCCTTACAAGTTTGATTCATATAAACTTATTCGTTGTATTTGAGAGGGTTGTTGTGAGATTATACAGGAGAGCAAAGCCTTCTTTACAAGTGGAAACTGTCCTTAGCAGACGTATTCTAAAACCTTGAAAGGAGTCTAGAAAGGAAAGTTCAATGAGGACAATATTTGTTAGCCGTGAATTTGGGTGGCTACAAATAGTATCAGAGTCAGTCACTAGGCGGTGTGCCAGCAAGGATGCTGAGTCCTCAAGAAAGGTGAATTGTGAGATCCCACGTTGGTTGGAGGGAAAATGAGCGGTGTGCCAGCGAGAACGTTAAGCCCTCAAGGGGTAGATTGTGAGATCTCACGTCGGTTGGAGAAGGGAACGAAACATTTCTTATAAGGATGTGGAAACCTTCGGTTGGAGAAGGGAACGAAACATTTCTTATAAGGATGTGGAAACCTTCGGTTGGAGAGGGGAACGAAGCATTCCTTATAATGGTATGGACACCTCTCCCTAGCAGACGTGTTTTTGTTTTAAAATCTTGAGGGGAAGTCTGAAAAGCCCAAAGAGGACAATATTCGCTAGCGGTGGACTTGGAACATCTTTTTCAATTGGGTGTGATTTCGTTTCATTGAAGATTGTAGGCATCTGGATTATAGGGTTATTAGATGCTTTGGGAATGAAAGATTGTGGTGCCTATTTCACAGCAACAGCGAAAATGATTCCTTCCTATGAAGTTGATTGGGAATACCATCAAAGATTGTTGTGTTTCTTTTACATTTTCTGTTCACTAATCCCCAGGAGGTTTCATCCACTTTAAGGTTATAACTGTAAGACAAATTATTGAGGGTATCTTCCTACAAGCCTTTATTACTGAGATCTTTGTTCACTAACAACTTTCACTCTTAGTTTATTTTCAAATGATTCTATACATTAGGTCTTTACAACAAAAAGGCCGCCTTTTTTCAGTTCTAACAATTTGGTTCGGCAGGGTGAAAGGTCAAACCATCAACCTTTGGCATGGTAATTAGTGACTTATCCATACTCAGATTGGCCGGTAGAACATAGACTTACGGGGAATTATTCCATACAAATTCATGTAGGTAAGACAGAATTGCTTGTTTTTTGTCTGTTGTGGGAGCCCTCTGAAGAATAATTCTGTGCAAATATGTTTCATCTGAAAATGGGAATGGGAATCTGAGTAATTTTAGATGCATGGTTGTGTTTGTGAATCTCTTTAGCTGCTGCAAAGGAAGTAGCAATGCATTACTGCATCAAAAGAAACAGCCTCCCCTGACATGTTTCACAAATAGCATATTATATGACCATAGAGAGAGAGAGTTTTTGAAGTAGAACTGGATATGCTCAATGTTGAGATGATTTCTTGTTTGCTACCAAACATTGGCTGCTTGCTTGTTTATCCATAATCTTATAACCTTGAAAAACTAGGTGGTATGGCCATACTTATTTGGATTCAGTGTATTTTTGTTTGTACTTTATTCCAGTTGCAGTGTACTAAGCTGATTGGAGTTTTGCAGGAATGCATCCAAGGTTAGATTTCATGTGGGTCCCTATAGTTCTAAGATTTTCAACTTAGTCCCTATATTTTGGCTTCACTTTCGATTAAATCCCACTAAATTGTCCAAATACTAAACTTTATTGTGAAATGTATTTGTTAATATAGCTGTAAACTGGAGGATTCATTGAAGTTTTGA

mRNA sequence

CCCGCCTACCCGCTTACTACCCGTCTTCCACATCCATTTGCATCAAATCCATTCTGCAAACTTCCAGACAGACCTTTTTCTCTCTCATCTCTTTCTCTCTCCTCCAATTTCTATTTGATAGGCCCCAAATTCCCCGCTCATCAACCCTAGAACTACTCAATTTCCTCGAATTTTCCCGGTGACTCTGGAAATCCTTCGTTTCTGTGAACGATGTTGCAGTTCTTCTTCACGGTGGCTTTCTCTGCAGTACCTTTGACTCTCTACGTTCCGCCTCTCCGGAGCTTCAATCTCTTCGTCGAGACCATGGAGGAGATACTTCGCGAGTCCAGAACGTATACCAATCGGGTTTATCCGCGGGCTCGGCATGTTTGGTTTAGGGTTTTGGATTGTGTTCTTTGCAGCACCAGCTGTAAACTGGAGGATTCATTGAAGTTTTGA

Coding sequence (CDS)

ATGTTGCAGTTCTTCTTCACGGTGGCTTTCTCTGCAGTACCTTTGACTCTCTACGTTCCGCCTCTCCGGAGCTTCAATCTCTTCGTCGAGACCATGGAGGAGATACTTCGCGAGTCCAGAACGTATACCAATCGGGTTTATCCGCGGGCTCGGCATGTTTGGTTTAGGGTTTTGGATTGTGTTCTTTGCAGCACCAGCTGTAAACTGGAGGATTCATTGAAGTTTTGA

Protein sequence

MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDCVLCSTSCKLEDSLKF

Homology

[Close]

BLAST of Cp4.1LG03g04490 vs. NCBI nr
Match: XP_022934952.1 (uncharacterized protein LOC111441965 [Cucurbita moschata] >XP_022983303.1 uncharacterized protein LOC111481923 [Cucurbita maxima] >XP_023527102.1 uncharacterized protein LOC111790442 [Cucurbita pepo subsp. pepo] >KAG7018085.1 hypothetical protein SDJN02_19951, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 133 bits (335), Expect = 4.65e-39
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60
          MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60

Query: 61 VLCST 65
          VLCST
Sbjct: 61 VLCST 65

[Close]

BLAST of Cp4.1LG03g04490 vs. NCBI nr
Match: KAG6581581.1 (hypothetical protein SDJN03_21583, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 133 bits (335), Expect = 6.90e-39
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60
          MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60

Query: 61 VLCST 65
          VLCST
Sbjct: 61 VLCST 65

[Close]

BLAST of Cp4.1LG03g04490 vs. NCBI nr
Match: KAE8650936.1 (hypothetical protein Csa_001741 [Cucumis sativus])

HSP 1 Score: 132 bits (333), Expect = 9.39e-39
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60
          MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVW RVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60

Query: 61 VLCSTS 66
          +LCSTS
Sbjct: 61 ILCSTS 66

[Close]

BLAST of Cp4.1LG03g04490 vs. NCBI nr
Match: XP_011651782.1 (uncharacterized protein LOC105434940 [Cucumis sativus] >XP_016902752.1 PREDICTED: uncharacterized protein LOC107991865 [Cucumis melo])

HSP 1 Score: 130 bits (328), Expect = 5.45e-38
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60
          MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVW RVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60

Query: 61 VLCST 65
          +LCST
Sbjct: 61 ILCST 65

[Close]

BLAST of Cp4.1LG03g04490 vs. NCBI nr
Match: XP_038905300.1 (uncharacterized protein LOC120091370 [Benincasa hispida])

HSP 1 Score: 130 bits (327), Expect = 7.74e-38
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60
          MLQFFFTVAFSAVPLTLY+PPLRSFNLFVETMEEILRESRTYTNRVYPRARHVW RVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60

Query: 61 VLCST 65
          +LCST
Sbjct: 61 ILCST 65

[Close]

BLAST of Cp4.1LG03g04490 vs. ExPASy TrEMBL
Match: A0A6J1J7E0 (uncharacterized protein LOC111481923 OS=Cucurbita maxima OX=3661 GN=LOC111481923 PE=4 SV=1)

HSP 1 Score: 133 bits (335), Expect = 2.25e-39
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60
          MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60

Query: 61 VLCST 65
          VLCST
Sbjct: 61 VLCST 65

[Close]

BLAST of Cp4.1LG03g04490 vs. ExPASy TrEMBL
Match: A0A6J1F484 (uncharacterized protein LOC111441965 OS=Cucurbita moschata OX=3662 GN=LOC111441965 PE=4 SV=1)

HSP 1 Score: 133 bits (335), Expect = 2.25e-39
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60
          MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60

Query: 61 VLCST 65
          VLCST
Sbjct: 61 VLCST 65

[Close]

BLAST of Cp4.1LG03g04490 vs. ExPASy TrEMBL
Match: A0A0A0LD25 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697900 PE=4 SV=1)

HSP 1 Score: 130 bits (328), Expect = 2.64e-38
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60
          MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVW RVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60

Query: 61 VLCST 65
          +LCST
Sbjct: 61 ILCST 65

[Close]

BLAST of Cp4.1LG03g04490 vs. ExPASy TrEMBL
Match: A0A1S4E3E9 (uncharacterized protein LOC107991865 OS=Cucumis melo OX=3656 GN=LOC107991865 PE=4 SV=1)

HSP 1 Score: 130 bits (328), Expect = 2.64e-38
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60
          MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVW RVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60

Query: 61 VLCST 65
          +LCST
Sbjct: 61 ILCST 65

[Close]

BLAST of Cp4.1LG03g04490 vs. ExPASy TrEMBL
Match: A0A6J1DEC8 (uncharacterized protein LOC111020277 OS=Momordica charantia OX=3673 GN=LOC111020277 PE=4 SV=1)

HSP 1 Score: 127 bits (320), Expect = 4.39e-37
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60
          MLQFFFT+AFSAVPLTLYVPPLRS NLFVETMEEILRESRTYTNRVYPRARHVW RVLDC
Sbjct: 1  MLQFFFTLAFSAVPLTLYVPPLRSLNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60

Query: 61 VLCST 65
          VLCST
Sbjct: 61 VLCST 65

[Close]

BLAST of Cp4.1LG03g04490 vs. TAIR 10
Match: AT3G52105.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 84.0 bits (206), Expect = 5.8e-17
Identity = 39/65 (60.00%), Postives = 49/65 (75.38%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60
          MLQ FFT+AFSA PLTLY+PP+R   +FVETMEE+  E R Y+ R++PRAR  W R+LDC
Sbjct: 1  MLQLFFTIAFSAAPLTLYIPPIRCLTVFVETMEEMGMEGRVYSWRLFPRARIAWSRLLDC 60

Query: 61 VLCST 66
             S+
Sbjct: 61 FFSSS 65

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g04490 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g04490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022934952.1	4.65e-39	100.00	uncharacterized protein LOC111441965 [Cucurbita moschata] >XP_022983303.1 unchar...	[more]
KAG6581581.1	6.90e-39	100.00	hypothetical protein SDJN03_21583, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8650936.1	9.39e-39	96.97	hypothetical protein Csa_001741 [Cucumis sativus]	[more]
XP_011651782.1	5.45e-38	96.92	uncharacterized protein LOC105434940 [Cucumis sativus] >XP_016902752.1 PREDICTED...	[more]
XP_038905300.1	7.74e-38	95.38	uncharacterized protein LOC120091370 [Benincasa hispida]	[more]

BLAST of Cp4.1LG03g04490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J7E0	2.25e-39	100.00	uncharacterized protein LOC111481923 OS=Cucurbita maxima OX=3661 GN=LOC111481923...	[more]
A0A6J1F484	2.25e-39	100.00	uncharacterized protein LOC111441965 OS=Cucurbita moschata OX=3662 GN=LOC1114419...	[more]
A0A0A0LD25	2.64e-38	96.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697900 PE=4 SV=1	[more]
A0A1S4E3E9	2.64e-38	96.92	uncharacterized protein LOC107991865 OS=Cucumis melo OX=3656 GN=LOC107991865 PE=...	[more]
A0A6J1DEC8	4.39e-37	95.38	uncharacterized protein LOC111020277 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]

BLAST of Cp4.1LG03g04490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52105.1	5.8e-17	60.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36616	BNAC07G32700D PROTEIN	coord: 1..66
None	No IPR available	PANTHER	PTHR36616:SF4	BNAC07G32700D PROTEIN	coord: 1..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g04490.1	Cp4.1LG03g04490.1	mRNA