Cp4.1LG03g02530 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG03g02530
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG03: 492186 .. 492497 (+)
RNA-Seq ExpressionCp4.1LG03g02530
SyntenyCp4.1LG03g02530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTGTATTTGTTTCCGAGGCCCAAAGGAGAAGAAGAAGAGCAATCAAGCGCATGGCGACAAAGGTGCCCGGAAATTCAGACCTCCGCGGGGATACACCGGAGGAACTGCAGCTGGTGGTTCCACTACCGGAAATGGTAATTTGACTGTTTTGACTGATCATGATGGCGGTGTCGTTTTGGCGTCCACGTTTGGTTTTGCGGTTGCTGCAGCTGCGGTGGTCGATGCTGGGGAACATGGTGGAAGCTGTGGTGGTGGAGAATGCGGCGGCGCCGGCGGGTGTGGTGGTGGCGGCTGCGGCGGTGGTTGA

mRNA sequence

ATGAGTTGTATTTGTTTCCGAGGCCCAAAGGAGAAGAAGAAGAGCAATCAAGCGCATGGCGACAAAGGTGCCCGGAAATTCAGACCTCCGCGGGGATACACCGGAGGAACTGCAGCTGGTGGTTCCACTACCGGAAATGGTAATTTGACTGTTTTGACTGATCATGATGGCGGTGTCGTTTTGGCGTCCACGTTTGGTTTTGCGGTTGCTGCAGCTGCGGTGGTCGATGCTGGGGAACATGGTGGAAGCTGTGGTGGTGGAGAATGCGGCGGCGCCGGCGGGTGTGGTGGTGGCGGCTGCGGCGGTGGTTGA

Coding sequence (CDS)

ATGAGTTGTATTTGTTTCCGAGGCCCAAAGGAGAAGAAGAAGAGCAATCAAGCGCATGGCGACAAAGGTGCCCGGAAATTCAGACCTCCGCGGGGATACACCGGAGGAACTGCAGCTGGTGGTTCCACTACCGGAAATGGTAATTTGACTGTTTTGACTGATCATGATGGCGGTGTCGTTTTGGCGTCCACGTTTGGTTTTGCGGTTGCTGCAGCTGCGGTGGTCGATGCTGGGGAACATGGTGGAAGCTGTGGTGGTGGAGAATGCGGCGGCGCCGGCGGGTGTGGTGGTGGCGGCTGCGGCGGTGGTTGA

Protein sequence

MSCICFRGPKEKKKSNQAHGDKGARKFRPPRGYTGGTAAGGSTTGNGNLTVLTDHDGGVVLASTFGFAVAAAAVVDAGEHGGSCGGGECGGAGGCGGGGCGGG
Homology
BLAST of Cp4.1LG03g02530 vs. NCBI nr
Match: XP_023528737.1 (loricrin-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 191 bits (486), Expect = 4.07e-61
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MSCICFRGPKEKKKSNQAHGDKGARKFRPPRGYTGGTAAGGSTTGNGNLTVLTDHDGGVV 60
           MSCICFRGPKEKKKSNQAHGDKGARKFRPPRGYTGGTAAGGSTTGNGNLTVLTDHDGGVV
Sbjct: 1   MSCICFRGPKEKKKSNQAHGDKGARKFRPPRGYTGGTAAGGSTTGNGNLTVLTDHDGGVV 60

Query: 61  LASTFGFAVAAAAVVDAGEHGGSCGGGECGGAGGCGGGGCGGG 103
           LASTFGFAVAAAAVVDAGEHGGSCGGGECGGAGGCGGGGCGGG
Sbjct: 61  LASTFGFAVAAAAVVDAGEHGGSCGGGECGGAGGCGGGGCGGG 103

BLAST of Cp4.1LG03g02530 vs. NCBI nr
Match: KAG6580518.1 (hypothetical protein SDJN03_20520, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 163 bits (413), Expect = 2.57e-49
Identity = 91/103 (88.35%), Postives = 93/103 (90.29%), Query Frame = 0

Query: 1   MSCICFRGPKEKKKSNQAHGDKGARKFRPPRGYTGGTAAGGSTTGNGNLTVLTDHDGGVV 60
           MSCICFRGPKE+K SNQAHGD GARKFRPPRGY+GGTAA  ST GNGNLTVLTDHDGGVV
Sbjct: 55  MSCICFRGPKEEKNSNQAHGDNGARKFRPPRGYSGGTAAAASTPGNGNLTVLTDHDGGVV 114

Query: 61  LASTFGFAVAAAAVVDAGEHGGSCGGGECGGAGGCGGGGCGGG 103
           LASTFGFAVAAAAVVDAGEHGG     ECGGAGGCGGGGCGGG
Sbjct: 115 LASTFGFAVAAAAVVDAGEHGG-----ECGGAGGCGGGGCGGG 152

BLAST of Cp4.1LG03g02530 vs. ExPASy TrEMBL
Match: A0A0A0LDL8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733910 PE=4 SV=1)

HSP 1 Score: 115 bits (288), Expect = 2.56e-31
Identity = 65/93 (69.89%), Postives = 70/93 (75.27%), Query Frame = 0

Query: 3  CICFRGPKEKKKSN---QAHGDKGARKFRPPRGYTGGTAAGGSTTGNGNLTVLTDH-DGG 62
          CICF   ++KKKSN   Q  G KG RKFRPPRG+ G T  GGS  GNGNL VLTDH DGG
Sbjct: 5  CICFGAGQKKKKSNNNNQTDGHKGGRKFRPPRGHGGRTGVGGSGAGNGNLAVLTDHHDGG 64

Query: 63 VVLASTFGFAVAAAAVVDAGEHGGSCGGGECGG 91
          V + +T GFAVAAAAVVD  EHGGSCGGGECGG
Sbjct: 65 VAMVATLGFAVAAAAVVDVAEHGGSCGGGECGG 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_023528737.14.07e-61100.00loricrin-like [Cucurbita pepo subsp. pepo][more]
KAG6580518.12.57e-4988.35hypothetical protein SDJN03_20520, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A0A0LDL82.56e-3169.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733910 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..47

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g02530.1Cp4.1LG03g02530.1mRNA