Cp4.1LG03g02430 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g02430
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	cyclin-dependent protein kinase inhibitor SMR4
Location	Cp4.1LG03: 560705 .. 560932 (-)
RNA-Seq Expression	Cp4.1LG03g02430
Synteny	Cp4.1LG03g02430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCGAAACAGGGGCCTGCAAATTACGAGGAAGAGTGTTCGACGCCGACCCGATGGGAGTGTCGGATTCCAGCGGTGTTCAACTGTCCGCCGCCGCCGCCGCCGAAGAAGAAGAAGGCTGTAAGTAGTGGGAAGAAGCGGGAGCCTCCGAAACATGGCTATTTTCAGCCCCCTGATCTTGAGGCTCTGTTTTCTGTTCCTCCAAGAAGGGAAGCTTGTGTTTAG

mRNA sequence

ATGGAGGCGAAACAGGGGCCTGCAAATTACGAGGAAGAGTGTTCGACGCCGACCCGATGGGAGTGTCGGATTCCAGCGGTGTTCAACTGTCCGCCGCCGCCGCCGCCGAAGAAGAAGAAGGCTGTAAGTAGTGGGAAGAAGCGGGAGCCTCCGAAACATGGCTATTTTCAGCCCCCTGATCTTGAGGCTCTGTTTTCTGTTCCTCCAAGAAGGGAAGCTTGTGTTTAG

Coding sequence (CDS)

ATGGAGGCGAAACAGGGGCCTGCAAATTACGAGGAAGAGTGTTCGACGCCGACCCGATGGGAGTGTCGGATTCCAGCGGTGTTCAACTGTCCGCCGCCGCCGCCGCCGAAGAAGAAGAAGGCTGTAAGTAGTGGGAAGAAGCGGGAGCCTCCGAAACATGGCTATTTTCAGCCCCCTGATCTTGAGGCTCTGTTTTCTGTTCCTCCAAGAAGGGAAGCTTGTGTTTAG

Protein sequence

MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPPPPKKKKAVSSGKKREPPKHGYFQPPDLEALFSVPPRREACV

Homology

[Close]

BLAST of Cp4.1LG03g02430 vs. ExPASy Swiss-Prot
Match: Q9LNX4 (Cyclin-dependent protein kinase inhibitor SMR5 OS=Arabidopsis thaliana OX=3702 GN=SMR5 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.4e-12
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 9  NYEEECSTPTRWECRIPAVFNCPPPPPPKKKKAVSSGKKREPPKHGYFQPPDLEALFSVP 68
          +Y+  C+TPTR +CRIPA   C PPP  +K+  +  GKKREPPK GYFQPPDL+  FSV 
Sbjct: 17 DYQMGCTTPTRDDCRIPAYPPC-PPPVRRKRSLLGFGKKREPPKKGYFQPPDLDLFFSVV 76

Query: 69 PRREA 74
             +A
Sbjct: 77 AASQA 80

[Close]

BLAST of Cp4.1LG03g02430 vs. ExPASy Swiss-Prot
Match: Q1JPP8 (Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 GN=SMR4 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.5e-12
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 11 EEECSTPTRWECRIPAVFNCPPPPPPKKKKAVSSGKKREPPKHGYFQPPDLEALFSVPPR 70
          EE C+TP     RIP    CPPPP    +K +   +KR+PP++GYFQPPDLE LF   PR
Sbjct: 12 EEGCTTPRSTMYRIPVASVCPPPP----RKKLMVVRKRDPPRNGYFQPPDLETLFYAQPR 71

Query: 71 REAC 75
          REAC
Sbjct: 72 REAC 71

[Close]

BLAST of Cp4.1LG03g02430 vs. NCBI nr
Match: XP_023528630.1 (cyclin-dependent protein kinase inhibitor SMR4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 160 bits (406), Expect = 8.70e-50
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPPPPKKKKAVSSGKKREPPKHGYFQPPD 60
          MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPPPPKKKKAVSSGKKREPPKHGYFQPPD
Sbjct: 1  MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPPPPKKKKAVSSGKKREPPKHGYFQPPD 60

Query: 61 LEALFSVPPRREACV 75
          LEALFSVPPRREACV
Sbjct: 61 LEALFSVPPRREACV 75

[Close]

BLAST of Cp4.1LG03g02430 vs. NCBI nr
Match: XP_022983341.1 (cyclin-dependent protein kinase inhibitor SMR4 [Cucurbita maxima])

HSP 1 Score: 159 bits (402), Expect = 3.55e-49
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1  MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPPPPKKKKAVSSGKKREPPKHGYFQPPD 60
          MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPPPPKKKKAV SGKKREPPKHGYFQPPD
Sbjct: 1  MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPPPPKKKKAVGSGKKREPPKHGYFQPPD 60

Query: 61 LEALFSVPPRREACV 75
          LEALFSVPPRREACV
Sbjct: 61 LEALFSVPPRREACV 75

[Close]

BLAST of Cp4.1LG03g02430 vs. NCBI nr
Match: KAG6580535.1 (Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017288.1 Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 157 bits (398), Expect = 1.45e-48
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1  MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPPPPKKKKAVSSGKKREPPKHGYFQPPD 60
          MEAKQGPANYEEECSTPTRWECRIPAV NCPPPPPPKKKKAVSSGKKREPPKHGYFQPPD
Sbjct: 1  MEAKQGPANYEEECSTPTRWECRIPAVSNCPPPPPPKKKKAVSSGKKREPPKHGYFQPPD 60

Query: 61 LEALFSVPPRREACV 75
          LEALFSVPPRREACV
Sbjct: 61 LEALFSVPPRREACV 75

[Close]

BLAST of Cp4.1LG03g02430 vs. NCBI nr
Match: XP_038905412.1 (cyclin-dependent protein kinase inhibitor SMR4 [Benincasa hispida])

HSP 1 Score: 140 bits (352), Expect = 1.40e-41
Identity = 66/74 (89.19%), Postives = 68/74 (91.89%), Query Frame = 0


Query: 1  MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPPPPKKKKAVSSGKKREPPKHGYFQPPD 60
          MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPP   KKK  + GKKR+PPKHGYFQPPD
Sbjct: 1  MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPP---KKKIGTDGKKRDPPKHGYFQPPD 60

Query: 61 LEALFSVPPRREAC 74
          LEALFSVPPRREAC
Sbjct: 61 LEALFSVPPRREAC 71

[Close]

BLAST of Cp4.1LG03g02430 vs. NCBI nr
Match: XP_031737830.1 (cyclin-dependent protein kinase inhibitor SMR4 [Cucumis sativus] >KAE8651008.1 hypothetical protein Csa_002137 [Cucumis sativus])

HSP 1 Score: 135 bits (339), Expect = 1.35e-39
Identity = 62/74 (83.78%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 1  MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPPPPKKKKAVSSGKKREPPKHGYFQPPD 60
          M++KQG  NYEEECSTPTRWECRIPAVFNCPPPP   KKK  ++GKKREPPKHGYFQPPD
Sbjct: 1  MDSKQGTGNYEEECSTPTRWECRIPAVFNCPPPP---KKKNATAGKKREPPKHGYFQPPD 60

Query: 61 LEALFSVPPRREAC 74
          LEALFS+PPRREAC
Sbjct: 61 LEALFSIPPRREAC 71

[Close]

BLAST of Cp4.1LG03g02430 vs. ExPASy TrEMBL
Match: A0A6J1J1Y0 (cyclin-dependent protein kinase inhibitor SMR4 OS=Cucurbita maxima OX=3661 GN=LOC111481954 PE=4 SV=1)

HSP 1 Score: 159 bits (402), Expect = 1.72e-49
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1  MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPPPPKKKKAVSSGKKREPPKHGYFQPPD 60
          MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPPPPKKKKAV SGKKREPPKHGYFQPPD
Sbjct: 1  MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPPPPKKKKAVGSGKKREPPKHGYFQPPD 60

Query: 61 LEALFSVPPRREACV 75
          LEALFSVPPRREACV
Sbjct: 61 LEALFSVPPRREACV 75

[Close]

BLAST of Cp4.1LG03g02430 vs. ExPASy TrEMBL
Match: A0A0A0LAJ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734160 PE=4 SV=1)

HSP 1 Score: 135 bits (339), Expect = 8.51e-39
Identity = 62/74 (83.78%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 1   MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPPPPKKKKAVSSGKKREPPKHGYFQPPD 60
           M++KQG  NYEEECSTPTRWECRIPAVFNCPPPP   KKK  ++GKKREPPKHGYFQPPD
Sbjct: 87  MDSKQGTGNYEEECSTPTRWECRIPAVFNCPPPP---KKKNATAGKKREPPKHGYFQPPD 146

Query: 61  LEALFSVPPRREAC 74
           LEALFS+PPRREAC
Sbjct: 147 LEALFSIPPRREAC 157

[Close]

BLAST of Cp4.1LG03g02430 vs. ExPASy TrEMBL
Match: A0A7N2M7Y9 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 9.74e-21
Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 11 EEECSTPTRWECRIPAVFNCPPPPPPKKKKAVSSGKKREPPKHGYFQPPDLEALFSVPPR 70
          E+ CSTP R EC+IP V  CPPPP    KK  +SG KR+PPK+GYFQPPDL+A+F++PPR
Sbjct: 8  EDRCSTPKRRECQIPVVVVCPPPP----KKKSASGMKRDPPKNGYFQPPDLDAIFTMPPR 66

Query: 71 REA 73
          REA
Sbjct: 68 REA 66

[Close]

BLAST of Cp4.1LG03g02430 vs. ExPASy TrEMBL
Match: A0A1R3J8M1 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_18555 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.17e-20
Identity = 44/65 (67.69%), Postives = 51/65 (78.46%), Query Frame = 0


Query: 11 EEECSTPTRWECRIPAVFNCPPPPPPKKKKAVSSGKKREPPKHGYFQPPDLEALFSVPPR 70
          ++  STPTR ECRIPA   CPPPPP  KKK  S GK+REPPK+GYFQPPDLE LF++  R
Sbjct: 26 QDGLSTPTRGECRIPAEKACPPPPP--KKKPFSFGKRREPPKNGYFQPPDLELLFAMGTR 85

Query: 71 REACV 75
          R+ACV
Sbjct: 86 RQACV 88

[Close]

BLAST of Cp4.1LG03g02430 vs. ExPASy TrEMBL
Match: A0A5C7IXT6 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_002686 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.95e-20
Identity = 46/67 (68.66%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 11 EEECSTPTRWECRIPAVFNCPPPPPPKKKKAVSSGKKREPPKHGYFQPPD-LEALFSV-- 70
          +E CSTPTR ECRIP V  C PPPP KKKKA S GKKREPPK+GYFQ PD LEA F++  
Sbjct: 14 QEGCSTPTREECRIPGVAACCPPPPKKKKKAFSFGKKREPPKNGYFQSPDELEAFFNIIG 73

Query: 71 PPRREAC 74
          P R +AC
Sbjct: 74 PRREQAC 80

[Close]

BLAST of Cp4.1LG03g02430 vs. TAIR 10
Match: AT5G02220.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 71.2 bits (173), Expect = 3.9e-13
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 11 EEECSTPTRWECRIPAVFNCPPPPPPKKKKAVSSGKKREPPKHGYFQPPDLEALFSVPPR 70
          EE C+TP     RIP    CPPPP    +K +   +KR+PP++GYFQPPDLE LF   PR
Sbjct: 12 EEGCTTPRSTMYRIPVASVCPPPP----RKKLMVVRKRDPPRNGYFQPPDLETLFYAQPR 71

Query: 71 REAC 75
          REAC
Sbjct: 72 REAC 71

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g02430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LNX4	2.4e-12	55.38	Cyclin-dependent protein kinase inhibitor SMR5 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q1JPP8	5.5e-12	54.69	Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Cp4.1LG03g02430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023528630.1	8.70e-50	100.00	cyclin-dependent protein kinase inhibitor SMR4 [Cucurbita pepo subsp. pepo]	[more]
XP_022983341.1	3.55e-49	98.67	cyclin-dependent protein kinase inhibitor SMR4 [Cucurbita maxima]	[more]
KAG6580535.1	1.45e-48	98.67	Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma ...	[more]
XP_038905412.1	1.40e-41	89.19	cyclin-dependent protein kinase inhibitor SMR4 [Benincasa hispida]	[more]
XP_031737830.1	1.35e-39	83.78	cyclin-dependent protein kinase inhibitor SMR4 [Cucumis sativus] >KAE8651008.1 h...	[more]

BLAST of Cp4.1LG03g02430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J1Y0	1.72e-49	98.67	cyclin-dependent protein kinase inhibitor SMR4 OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A0A0LAJ2	8.51e-39	83.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734160 PE=4 SV=1	[more]
A0A7N2M7Y9	9.74e-21	65.08	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A1R3J8M1	1.17e-20	67.69	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_18555 PE=4 SV=1	[more]
A0A5C7IXT6	3.95e-20	68.66	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_002686 PE=4 SV=1	[more]

BLAST of Cp4.1LG03g02430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02220.1	3.9e-13	54.69	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..62
None	No IPR available	PANTHER	PTHR33142:SF15	OS01G0843700 PROTEIN	coord: 2..73
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 2..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g02430.1	Cp4.1LG03g02430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006974	cellular response to DNA damage stimulus
biological_process	GO:0045839	negative regulation of mitotic nuclear division
biological_process	GO:0032875	regulation of DNA endoreduplication
cellular_component	GO:0005634	nucleus