Cp4.1LG03g02310 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g02310
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	H/ACA ribonucleoprotein complex subunit 4-like
Location	Cp4.1LG03: 624479 .. 626892 (+)
RNA-Seq Expression	Cp4.1LG03g02310
Synteny	Cp4.1LG03g02310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGGCGTTGAGATTTCTCGTTCGGAGAAGAAAAAGAAGAAGCACCGGAGTAAGGATGACGAAGTGTCACCGGCTGTCGGTTCTGATGAGCAGCCGCCAAAGGACGTTGCCGACTTTATGATCAAGCCTCAAAGTTTTACTCCTCCGGTGGATACATCTCAATGGCCTATTCTTTTGAAGAACTATGATCGTCTCAATGTACGTACCGGTCACTACACTCCTTTGCCGTCCGGTTTCTCCCCACTCAAGCGGCCTCTGGTTGACTACATCAGGTATGGTATTCTCAATCTTGATAAACCGGCGAATCCTTCGTCGCACGAAGTTGTGGCTTGGATTAAAAGAATTCTTCGGGTTGAGAAAACGGGTCATAGTGGTACTCTCGACCCGAAGGTTACTGGGAACCTGATAGTGTGCATTGATCGAGCCACGCGGCTCGTGAAATCGCAACAGGGTGCGGGTAAGGAGTATGTTTGTGTTGCTCGATTGCATTCTTCTGTTCCCGATGTTTCTAAGGTGGCTCGGGCTTTGGAGACGCTCACCGGGGCTGTGTTTCAGAGGCCGCCGTTGATATCGGCTGTGAAACGACAGCTTAGGATTAGAACTATATATGAAAGCAAGCTTCTTGAGTATGATGCTGATAAACATTTGGTTGTGTTTTGGATTTCTTGTGAAGCTGGAACTTATGTTAGGACGCTATGTGTGCACTTGGGTCTGATTCTTGGCGTTGGAGGGCATATGCAAGAACTTAGGAGGGTAAGATCTGGGATCTTGGGTGAGAAGGATAACATGGTTACAATGCATGATGTGATGGATGCTCAATGGGTTTATGATAATTTCAAAGATGAGAGCTACTTGAGGAGAGTAATTATGCCTCTTGAGGTGGTTTTGACGNAGATTTACTAGTTTGCTTAATCCCTAATATGAGTGTTGTTCCTCTTTGTTGCTTAGTATGTTTTGATTTTATCTGTTTTCACCAAGCAGATTCCAAATTTTCATGGCCGATCCAAAACATCATGATCTCTGACAATCACGAGTTCTTCTCCAACTAGAACGAAACTGCTAATCATTTTAATTTTATGAAATGTATATTTTTTTGCATAATTATACGATTATTATATAATTGTATTTGCATAAGCATTCAACAAGNTCAAGGATTCTGCTGTTAATGCTATTTGTTATGGTGCTAAGTTGATGATTCCAGGGCTGTTGAGATTTGAGAACGATATTGAGGTTGGGGAAGAAGTTGTACTCATGACCACCAAGGGTGAAGCCATTGCTCTTGGTATTGCAGAGATGACTACTTCTGTGATGGCAACTTGTGATCATGGTGTAGTTGCAAAGATCAAAAGGGTTGTGATGGACCGAGATACTTACCCAAGGAAATGGGGATTAGGTCCAAGGGCATCAATGAAGAAAAAACTTATTGGAGAAGGGAAGTTGGACAAGCATGGAAAACCAAATGAGAAAACTCCTTCGGAGTGGATGAGGAATTTGGTTTTACCCACTGGTGGTGATTCTTTGGTTGCTAGCGTGTTTGCTACTGACTCTGCAACTGTTGATGAGGGTAAGCAAGAGACAGAAAAAGATGGTGGAGGGCGTAAGCGAAAACATGATGAAGAAACCGAAGCTGCTCCTGCTAAGAAACTGAAAGCTGAAAAGACTGAAGATGCCGAAGAAGTTGAAGAAGGCGGGAAGAAAGAAAAGAAGAAGAAGAAGAAAGACAAAGAGAAGGGTAGTGGTGAACCTTCGGACGAGGAGAATACTGAGCGGTCGGAGAAGAAAAAGAAGAAGAAGGACAAAGAGGGTAAAGAAGCAGGTACACCGGAGACACCGAAGTCGGAGAAAAAAAAGAAGAAGAAAGATAAGGAATCTGGCGTTGGTGATGTTCAAAATGGGGAAGCAGATGATCATGTTGATGGGAGTGAGAAGAAAAAGAAGAAGAAAAAGAAGAATAAAGAAGATGCAGAAGAGTAAGTTAGAGGGATCAGATTCTTACATTTTATTTGGGTAACTCTGATTGTATGGCTGTCCATTTCAGTTTCTTCTAGATTTTGCAAGTTCTTTCTTTCTTTATTACGCATTTGCTGTAGAATTTTTGTTTCAACATTTCGACTCTGTTCGATTCTACCATAGTATCTTCCTGGCTATCATCTCTTGGATTTATGGTCTCTTTTGATATCTTTGATTCCATCTTTTACAAGCTGATGGGCCCATCCTTGGGACAACCAAGGATTTGACATTTCTAACGAAGCAAATGAAGAAGGGTGGAAGGAGGAATGGCCCATATAGAACGAACATCTATGAGCTCAAGCAAATCAATTTTGTTTTTGTTTGTATAATTTGAGATGTGAAATCAAGTTGAGATTTACTAGTTTGCTTAATCCCTAATATGAGTGTTGTTCCTCTTTGTT

mRNA sequence

ATGTCGGGCGTTGAGATTTCTCGTTCGGAGAAGAAAAAGAAGAAGCACCGGAGTAAGGATGACGAAGTGTCACCGGCTGTCGGTTCTGATGAGCAGCCGCCAAAGGACGTTGCCGACTTTATGATCAAGCCTCAAAGTTTTACTCCTCCGGTGGATACATCTCAATGGCCTATTCTTTTGAAGAACTATGATCGTCTCAATGTACGTACCGGTCACTACACTCCTTTGCCGTCCGGTTTCTCCCCACTCAAGCGGCCTCTGGTTGACTACATCAGGTATGGTATTCTCAATCTTGATAAACCGGCGAATCCTTCGTCGCACGAAGTTGTGGCTTGGATTAAAAGAATTCTTCGGGTTGAGAAAACGGGTCATAGTGGTACTCTCGACCCGAAGGTTACTGGGAACCTGATAGTGTGCATTGATCGAGCCACGCGGCTCGTGAAATCGCAACAGGGTGCGGGTAAGGAGTATGTTTGTGTTGCTCGATTGCATTCTTCTGTTCCCGATGTTTCTAAGGTGGCTCGGGCTTTGGAGACGCTCACCGGGGCTGTGTTTCAGAGGCCGCCGTTGATATCGGCTGTGAAACGACAGCTTAGGATTAGAACTATATATGAAAGCAAGCTTCTTGAGTATGATGCTGATAAACATTTGGTTGTGTTTTGGATTTCTTGTGAAGCTGGAACTTATGTTAGGACGCTATGTGTGCACTTGGGTCTGATTCTTGGCGTTGGAGGGCATATGCAAGAACTTAGGAGGGTAAGATCTGGGATCTTGGGTGAGAAGGATAACATGGTTACAATGCATGATGTGATGGATGCTCAATGGGTTTATGATAATTTCAAAGATGAGAGCTACTTGAGGAGAGTAATTATGCCTCTTGAGNTCAAGGATTCTGCTGTTAATGCTATTTGTTATGGTGCTAAGTTGATGATTCCAGGGCTGTTGAGATTTGAGAACGATATTGAGGTTGGGGAAGAAGTTGTACTCATGACCACCAAGGGTGAAGCCATTGCTCTTGGTATTGCAGAGATGACTACTTCTGTGATGGCAACTTGTGATCATGGTGTAGTTGCAAAGATCAAAAGGGTTGTGATGGACCGAGATACTTACCCAAGGAAATGGGGATTAGGTCCAAGGGCATCAATGAAGAAAAAACTTATTGGAGAAGGGAAGTTGGACAAGCATGGAAAACCAAATGAGAAAACTCCTTCGGAGTGGATGAGGAATTTGGTTTTACCCACTGGTGGTGATTCTTTGGTTGCTAGCGTGTTTGCTACTGACTCTGCAACTGTTGATGAGGGTAAGCAAGAGACAGAAAAAGATGGTGGAGGGCGTAAGCGAAAACATGATGAAGAAACCGAAGCTGCTCCTGCTAAGAAACTGAAAGCTGAAAAGACTGAAGATGCCGAAGAAGTTGAAGAAGGCGGGAAGAAAGAAAAGAAGAAGAAGAAGAAAGACAAAGAGAAGGGTAGTGGTGAACCTTCGGACGAGGAGAATACTGAGCGGTCGGAGAAGAAAAAGAAGAAGAAGGACAAAGAGGGTAAAGAAGCAGGTACACCGGAGACACCGAAGTCGGAGAAAAAAAAGAAGAAGAAAGATAAGGAATCTGGCGTTGGTGATGTTCAAAATGGGGAAGCAGATGATCATGTTGATGGGAGTGAGAAGAAAAAGAAGAAGAAAAAGAAGAATAAAGAAGATGCAGAAGAGTAAGTTAGAGGGATCAGATTCTTACATTTTATTTGGCTGATGGGCCCATCCTTGGGACAACCAAGGATTTGACATTTCTAACGAAGCAAATGAAGAAGGGTGGAAGGAGGAATGGCCCATATAGAACGAACATCTATGAGCTCAAGCAAATCAATTTTGTTTTTGTTTGTATAATTTGAGATGTGAAATCAAGTTGAGATTTACTAGTTTGCTTAATCCCTAATATGAGTGTTGTTCCTCTTTGTT

Coding sequence (CDS)

ATGTCGGGCGTTGAGATTTCTCGTTCGGAGAAGAAAAAGAAGAAGCACCGGAGTAAGGATGACGAAGTGTCACCGGCTGTCGGTTCTGATGAGCAGCCGCCAAAGGACGTTGCCGACTTTATGATCAAGCCTCAAAGTTTTACTCCTCCGGTGGATACATCTCAATGGCCTATTCTTTTGAAGAACTATGATCGTCTCAATGTACGTACCGGTCACTACACTCCTTTGCCGTCCGGTTTCTCCCCACTCAAGCGGCCTCTGGTTGACTACATCAGGTATGGTATTCTCAATCTTGATAAACCGGCGAATCCTTCGTCGCACGAAGTTGTGGCTTGGATTAAAAGAATTCTTCGGGTTGAGAAAACGGGTCATAGTGGTACTCTCGACCCGAAGGTTACTGGGAACCTGATAGTGTGCATTGATCGAGCCACGCGGCTCGTGAAATCGCAACAGGGTGCGGGTAAGGAGTATGTTTGTGTTGCTCGATTGCATTCTTCTGTTCCCGATGTTTCTAAGGTGGCTCGGGCTTTGGAGACGCTCACCGGGGCTGTGTTTCAGAGGCCGCCGTTGATATCGGCTGTGAAACGACAGCTTAGGATTAGAACTATATATGAAAGCAAGCTTCTTGAGTATGATGCTGATAAACATTTGGTTGTGTTTTGGATTTCTTGTGAAGCTGGAACTTATGTTAGGACGCTATGTGTGCACTTGGGTCTGATTCTTGGCGTTGGAGGGCATATGCAAGAACTTAGGAGGGTAAGATCTGGGATCTTGGGTGAGAAGGATAACATGGTTACAATGCATGATGTGATGGATGCTCAATGGGTTTATGATAATTTCAAAGATGAGAGCTACTTGAGGAGAGTAATTATGCCTCTTGAGNTCAAGGATTCTGCTGTTAATGCTATTTGTTATGGTGCTAAGTTGATGATTCCAGGGCTGTTGAGATTTGAGAACGATATTGAGGTTGGGGAAGAAGTTGTACTCATGACCACCAAGGGTGAAGCCATTGCTCTTGGTATTGCAGAGATGACTACTTCTGTGATGGCAACTTGTGATCATGGTGTAGTTGCAAAGATCAAAAGGGTTGTGATGGACCGAGATACTTACCCAAGGAAATGGGGATTAGGTCCAAGGGCATCAATGAAGAAAAAACTTATTGGAGAAGGGAAGTTGGACAAGCATGGAAAACCAAATGAGAAAACTCCTTCGGAGTGGATGAGGAATTTGGTTTTACCCACTGGTGGTGATTCTTTGGTTGCTAGCGTGTTTGCTACTGACTCTGCAACTGTTGATGAGGGTAAGCAAGAGACAGAAAAAGATGGTGGAGGGCGTAAGCGAAAACATGATGAAGAAACCGAAGCTGCTCCTGCTAAGAAACTGAAAGCTGAAAAGACTGAAGATGCCGAAGAAGTTGAAGAAGGCGGGAAGAAAGAAAAGAAGAAGAAGAAGAAAGACAAAGAGAAGGGTAGTGGTGAACCTTCGGACGAGGAGAATACTGAGCGGTCGGAGAAGAAAAAGAAGAAGAAGGACAAAGAGGGTAAAGAAGCAGGTACACCGGAGACACCGAAGTCGGAGAAAAAAAAGAAGAAGAAAGATAAGGAATCTGGCGTTGGTGATGTTCAAAATGGGGAAGCAGATGATCATGTTGATGGGAGTGAGAAGAAAAAGAAGAAGAAAAAGAAGAATAAAGAAGATGCAGAAGAGTAA

Protein sequence

MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPSGFSPLKRPLVDYIRYGILNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEXKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNLVLPTGGDSLVASVFATDSATVDEGKQETEKDGGGRKRKHDEETEAAPAKKLKAEKTEDAEEVEEGGKKEKKKKKKDKEKGSGEPSDEENTERSEKKKKKKDKEGKEAGTPETPKSEKKKKKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKEDAEE

Homology

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BLAST of Cp4.1LG03g02310 vs. ExPASy Swiss-Prot
Match: Q9LD90 (H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=CBF5 PE=1 SV=1)

HSP 1 Score: 753.4 bits (1944), Expect = 1.8e-216
Identity = 422/586 (72.01%), Postives = 477/586 (81.40%), Query Frame = 0


Query: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL 60
           M+ V+IS S KKKK+ ++++D              D  D+MIKPQSFTP +DTSQWPILL
Sbjct: 1   MAEVDISHS-KKKKQDKTENDAA------------DTGDYMIKPQSFTPAIDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLVDYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120
           KNYDRLNVRTGHYTP+ +G SPLKRPL +YIRYG++NLDKPANPSSHEVVAWIKRILRVE
Sbjct: 61  KNYDRLNVRTGHYTPISAGHSPLKRPLQEYIRYGVINLDKPANPSSHEVVAWIKRILRVE 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHS+VPDV+KVARALE+L
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALESL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDAD+HLVVFW+SCEAGTY+RT+CVHLGL+
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADRHLVVFWVSCEAGTYIRTMCVHLGLL 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLE------ 300
           LGVGGHMQELRRVRSGILGE +NMVTMHDVMDAQ+VYDN +DESYLRRVIMPLE      
Sbjct: 241 LGVGGHMQELRRVRSGILGENNNMVTMHDVMDAQFVYDNSRDESYLRRVIMPLEMILTSY 300

Query: 301 ----XKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
                KDSAVNAICYGAKLMIPGLLRFENDI+VG EVVLMTTKGEAIA+GIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMA 360

Query: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL 420
           TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLI +GKLDKHGKPNEKTP EW RN+
Sbjct: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIADGKLDKHGKPNEKTPVEWSRNV 420

Query: 421 VLPTGGDSLVASVFATDSATVDEGKQETE--KDGGGRKRKHDEETEAAPAKKLKAEKTE- 480
           VLPTGGD+++A      +A  +E K + E  + G  RKRKHD+ +++      K  KT+ 
Sbjct: 421 VLPTGGDAIIAGA----AAAPEEIKADAENGEAGEARKRKHDDSSDSPAPVTTKKSKTKE 480

Query: 481 -DAEEVEEGGKKEKKKKKKDKEKGSGEPSDEENTERSEKKKKKKDKEGKEAGTPETPKSE 540
            + EE EE  K  KKKKKKDKE    E  +EE     ++KKKKKDK+ +      +PKSE
Sbjct: 481 VEGEEAEEKVKSSKKKKKKDKE----EEKEEEAGSEKKEKKKKKDKKEEVIEEVASPKSE 540

Query: 541 KKKKKKDKESGVG-DVQNGEADDHVDGSEKKKKKKKKNK--EDAEE 570
           KKKKKK K++    D ++  A +  +  +KKK KKKKNK  ED EE
Sbjct: 541 KKKKKKSKDTEAAVDAEDESAAEKSEKKKKKKDKKKKNKDSEDDEE 565

[Close]

BLAST of Cp4.1LG03g02310 vs. ExPASy Swiss-Prot
Match: Q54T81 (Probable H/ACA ribonucleoprotein complex subunit 4 OS=Dictyostelium discoideum OX=44689 GN=nola4 PE=1 SV=1)

HSP 1 Score: 589.7 bits (1519), Expect = 3.5e-167
Identity = 324/563 (57.55%), Postives = 407/563 (72.29%), Query Frame = 0


Query: 14  KKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHY 73
           KK +SK  E S              + +IKP+  TP +DTS+WP+LLKNYD+L+VRTGHY
Sbjct: 5   KKSKSKSSEKS----------TQEVEQVIKPEK-TPILDTSKWPLLLKNYDQLSVRTGHY 64

Query: 74  TPLPSGFSPLKRPLVDYIRYGILNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVT 133
           TP+P+G SPLKRP+ +Y++YGI+NLDKP+NPSSHEVVAWI+ ILRV KTGHSGTLDPKVT
Sbjct: 65  TPIPNGHSPLKRPIKEYVKYGIINLDKPSNPSSHEVVAWIRTILRVTKTGHSGTLDPKVT 124

Query: 134 GNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETLTGAVFQRPPLISA 193
           G LIVCI+RATRLVKSQQGAGKEY+ + RLH ++   +++++A++TLTGA+FQRPP  SA
Sbjct: 125 GCLIVCIERATRLVKSQQGAGKEYIGIVRLHGAIEGTTELSKAVDTLTGALFQRPPQKSA 184

Query: 194 VKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRV 253
           VK++LR+RTI+ SKLLE+D +++L + W+ CEAGTY+RTLCVH+GL++GVGGHMQELRRV
Sbjct: 185 VKKRLRVRTIHNSKLLEFDPERNLGLIWVDCEAGTYIRTLCVHIGLLMGVGGHMQELRRV 244

Query: 254 RSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLE----------XKDSAVNAI 313
           RSGI+ EK   VTMHDV DAQ+ YDN KDESYLRRVI PLE           KDSA+NAI
Sbjct: 245 RSGIMSEKKGQVTMHDVKDAQYEYDNSKDESYLRRVIQPLEAILTNYKRIVVKDSAINAI 304

Query: 314 CYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMATCDHGVVAKIKRV 373
           CYGAKLMIPGLLR+E DIE  EEVVL+TTKGEAIA+GIA+MTT+ MATCDHGVVA IKRV
Sbjct: 305 CYGAKLMIPGLLRYEQDIESNEEVVLITTKGEAIAIGIAQMTTASMATCDHGVVATIKRV 364

Query: 374 VMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNLVLPTGGDSLVASV 433
           +MDRD YP +WGLGP+A +KK++I +GKLDK GKPNEKTPS+W       TG  +   + 
Sbjct: 365 IMDRDVYPVRWGLGPKAKVKKEMIKDGKLDKFGKPNEKTPSDWTNTYTYYTGQVATTTTT 424

Query: 434 FATDSATVDEGKQETEKDGGGRKRKHDEETEAAPAKKLKAEKTEDAEEVEEGGKKEKKKK 493
              +S  VD  K+ T                A+ A K + E +ED + V +  KK+KK+K
Sbjct: 425 SPVESMNVDTPKKAT----------------ASVAVKAEVESSEDEKPVPKKEKKDKKEK 484

Query: 494 KKDKEKGSGE---PSDEENTERSEKKKKKKDKEGKEAGTPETPKSEKKKKKKDKESGVGD 553
           KKD      E    S ++  E+ EKK+KK+ K  K+    E+ K EKK KK+ K S    
Sbjct: 485 KKDSSDDESEEEKSSKKDKKEKKEKKEKKEKKSSKDDSDDESSKKEKKDKKRKKSSDKDS 540

Query: 554 VQNGEADDHVDGSEKKKKKKKKN 564
               E+ D  D  +KK+KKK KN
Sbjct: 545 DSEKESSDKKDKKDKKEKKKSKN 540

[Close]

BLAST of Cp4.1LG03g02310 vs. ExPASy Swiss-Prot
Match: Q5ZJH9 (H/ACA ribonucleoprotein complex subunit DKC1 OS=Gallus gallus OX=9031 GN=DKC1 PE=2 SV=1)

HSP 1 Score: 589.3 bits (1518), Expect = 4.5e-167
Identity = 321/511 (62.82%), Postives = 390/511 (76.32%), Query Frame = 0


Query: 14  KKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHY 73
           KK R KD    P    D    +   +F+IKP+S    +DTSQWP+LLKN+D+LNV T HY
Sbjct: 10  KKRRKKDKRSLP--DEDVADIQHTEEFLIKPESRVAQLDTSQWPLLLKNFDKLNVLTTHY 69

Query: 74  TPLPSGFSPLKRPLVDYIRYGILNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVT 133
           TPLPSG +PLKR + DY+R G +NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVT
Sbjct: 70  TPLPSGANPLKREISDYVRSGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVT 129

Query: 134 GNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETLTGAVFQRPPLISA 193
           G LIVCI+RATRLVKSQQ AGKEYV + RLH+++   +++ARA+ETLTGA+FQRPPLI+A
Sbjct: 130 GCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIESEAQLARAIETLTGALFQRPPLIAA 189

Query: 194 VKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRV 253
           VKRQLR+RTIYESKL+EYD ++ L +FW+SCEAGTY+RTLCVHLGL+LGVGG MQELRRV
Sbjct: 190 VKRQLRVRTIYESKLVEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRV 249

Query: 254 RSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLE----------XKDSAVNAI 313
           RSGILGE DNMVTMHDV+DAQW YDN KD+SYLRRVI+PLE           KDSAVNAI
Sbjct: 250 RSGILGEMDNMVTMHDVLDAQWQYDNNKDDSYLRRVILPLEKLLTSHKRLVMKDSAVNAI 309

Query: 314 CYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMATCDHGVVAKIKRV 373
           CYGAK+M+PG+LR+E+ IE+ +E+V++TTKGEAI L IA MTT+V++TCDHGVVAKIKRV
Sbjct: 310 CYGAKIMLPGVLRYEDGIELKQEIVVITTKGEAICLAIALMTTAVISTCDHGVVAKIKRV 369

Query: 374 VMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNLVLPTGGDSLVASV 433
           +M+RDTYPRKWGLGP+AS KK +I +G LDKHGKPNE TP  W +  V     D   +S 
Sbjct: 370 IMERDTYPRKWGLGPKASQKKMMIQKGLLDKHGKPNECTPDSWKKEYV-----DYRESS- 429

Query: 434 FATDSATVDEGKQETEKDGGGRKRKHDEETEAAPAKKLKAEKTEDAEEVEEGGKKEKKKK 493
              ++A V +   E E+     KRK + E+E        +  T   EE+ +  KK+KKK+
Sbjct: 430 -KKEAAKVPQAVSEVER---APKRKRESESENEAVSPPPSPATPPPEELSKKEKKKKKKE 489

Query: 494 KKDKEKG-SGEPSDEENTERSEKKKKKKDKE 514
           KK KE   SGE   E  +E S KKKKKK K+
Sbjct: 490 KKAKEAAESGEEQVEVISESSAKKKKKKKKQ 508

[Close]

BLAST of Cp4.1LG03g02310 vs. ExPASy Swiss-Prot
Match: O60832 (H/ACA ribonucleoprotein complex subunit DKC1 OS=Homo sapiens OX=9606 GN=DKC1 PE=1 SV=3)

HSP 1 Score: 577.4 bits (1487), Expect = 1.8e-163
Identity = 310/525 (59.05%), Postives = 388/525 (73.90%), Query Frame = 0


Query: 6   ISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILLKNYDR 65
           + +  KKKK+ +S  +E       D    +   +F+IKP+S    +DTSQWP+LLKN+D+
Sbjct: 9   LPKKHKKKKERKSLPEE-------DVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFDK 68

Query: 66  LNVRTGHYTPLPSGFSPLKRPLVDYIRYGILNLDKPANPSSHEVVAWIKRILRVEKTGHS 125
           LNVRT HYTPL  G +PLKR + DYIR G +NLDKP+NPSSHEVVAWI+RILRVEKTGHS
Sbjct: 69  LNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHS 128

Query: 126 GTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETLTGAVF 185
           GTLDPKVTG LIVCI+RATRLVKSQQ AGKEYV + RLH+++   ++++RALETLTGA+F
Sbjct: 129 GTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGALF 188

Query: 186 QRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGG 245
           QRPPLI+AVKRQLR+RTIYESK++EYD ++ L +FW+SCEAGTY+RTLCVHLGL+LGVGG
Sbjct: 189 QRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGG 248

Query: 246 HMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLE----------X 305
            MQELRRVRSG++ EKD+MVTMHDV+DAQW+YDN KDESYLRRV+ PLE           
Sbjct: 249 QMQELRRVRSGVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLVM 308

Query: 306 KDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMATCDHG 365
           KDSAVNAICYGAK+M+PG+LR+E+ IEV +E+V++TTKGEAI + IA MTT+V++TCDHG
Sbjct: 309 KDSAVNAICYGAKIMLPGVLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDHG 368

Query: 366 VVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNLV--LP 425
           +VAKIKRV+M+RDTYPRKWGLGP+AS KK +I +G LDKHGKP + TP+ W +  V    
Sbjct: 369 IVAKIKRVIMERDTYPRKWGLGPKASQKKLMIKQGLLDKHGKPTDSTPATWKQEYVDYSE 428

Query: 426 TGGDSLVASVFATDSATVDEGKQETEKDGGGRKRKHDEETEAAPAKKLKAEKTEDAEEVE 485
           +    +VA V        +  K          KRK + E+E+           E      
Sbjct: 429 SAKKEVVAEVVKAPQVVAEAAKT--------AKRKRESESES----------DETPPAAP 488

Query: 486 EGGKKEKKKKKKDKEKGSG-----EPSDEENTERSEKKKKKKDKE 514
           +  KKEKKK KKDK+  +G     EP D ++    +KKKKKK KE
Sbjct: 489 QLIKKEKKKSKKDKKAKAGLESGAEPGDGDSDTTKKKKKKKKAKE 508

[Close]

BLAST of Cp4.1LG03g02310 vs. ExPASy Swiss-Prot
Match: Q9ESX5 (H/ACA ribonucleoprotein complex subunit DKC1 OS=Mus musculus OX=10090 GN=Dkc1 PE=1 SV=4)

HSP 1 Score: 575.9 bits (1483), Expect = 5.2e-163
Identity = 310/515 (60.19%), Postives = 391/515 (75.92%), Query Frame = 0


Query: 14  KKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHY 73
           KKH+ K D   P    D    +   +F+IKP+S    +DTSQWP+LLKN+D+LNVRT HY
Sbjct: 11  KKHKKKKDR-KPLQEDDVAEIQHAEEFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTAHY 70

Query: 74  TPLPSGFSPLKRPLVDYIRYGILNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVT 133
           TPLP G +PLKR + DYIR G +NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVT
Sbjct: 71  TPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVT 130

Query: 134 GNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETLTGAVFQRPPLISA 193
           G LIVCI+RATRLVKSQQ AGKEYV + RLH+++   ++++RALETLTGA+FQRPPLI+A
Sbjct: 131 GCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAA 190

Query: 194 VKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRV 253
           VKRQLR+RTIYESK++EYD ++ L +FW+SCEAGTY+RTLCVHLGL+LGVGG MQELRRV
Sbjct: 191 VKRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRV 250

Query: 254 RSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLE----------XKDSAVNAI 313
           RSG++ EKD+MVTMHDV+DAQW+YDN KDESYLRRV+ PLE           KDSAVNAI
Sbjct: 251 RSGVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAI 310

Query: 314 CYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMATCDHGVVAKIKRV 373
           CYGAK+M+PGLLR+E+ IEV +E+V++TTKGEAI + IA MTT+V++TCDHG+VAKIKRV
Sbjct: 311 CYGAKIMLPGLLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRV 370

Query: 374 VMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNLV--LPTGGDSLVA 433
           +M+RDTYPRKWGLGP+AS KK +I +G LDKHGKP + TP+ W ++ +    +G ++LV 
Sbjct: 371 IMERDTYPRKWGLGPKASQKKMMIKQGLLDKHGKPTDNTPATWKQDYIDYSDSGKNTLVT 430

Query: 434 SVFATDSATVDEGKQETEKDGGGRKRKHDEETEAAPAKKLKAEKTEDAEEVEEGGKKEKK 493
                      +  Q   +     KRK D E+E        +++T    +++E  KK+ K
Sbjct: 431 EAV--------QAPQLAAEAVNVIKRKRDSESE--------SDETPTVPQLKEKKKKKDK 490

Query: 494 KKKKDKEKGSGEPSDEENTERSEKKKKKKDKEGKE 517
           K K   E G GE  D +N + ++KKKKKK K  +E
Sbjct: 491 KPKTVLESG-GETGDGDN-DTTKKKKKKKVKVVEE 506

[Close]

BLAST of Cp4.1LG03g02310 vs. NCBI nr
Match: XP_023527935.1 (LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1068 bits (2761), Expect = 0.0
Identity = 568/584 (97.26%), Postives = 568/584 (97.26%), Query Frame = 0


Query: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL 60
           MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL
Sbjct: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLVDYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120
           KNYDRLNVRTGHYTPLPSGFSPLKRPLVDYIRYGILNLDKPANPSSHEVVAWIKRILRVE
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLVDYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEX----- 300
           LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLE      
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTXI 300

Query: 301 ----------KDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMT 360
                     KDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMT
Sbjct: 301 YXFAXSLIXXKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMT 360

Query: 361 TSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSE 420
           TSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSE
Sbjct: 361 TSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSE 420

Query: 421 WMRNLVLPTGGDSLVASVFATDSATVDEGKQETEKDGGGRKRKHDEETEAAPAKKLKAEK 480
           WMRNLVLPTGGDSLVASVFATDSATVDEGKQETEKDGGGRKRKHDEETEAAPAKKLKAEK
Sbjct: 421 WMRNLVLPTGGDSLVASVFATDSATVDEGKQETEKDGGGRKRKHDEETEAAPAKKLKAEK 480

Query: 481 TEDAEEVEEGGKKEKKKKKKDKEKGSGEPSDEENTERSEKKKKKKDKEGKEAGTPETPKS 540
           TEDAEEVEEGGKKEKKKKKKDKEKGSGEPSDEENTERSEKKKKKKDKEGKEAGTPETPKS
Sbjct: 481 TEDAEEVEEGGKKEKKKKKKDKEKGSGEPSDEENTERSEKKKKKKDKEGKEAGTPETPKS 540

Query: 541 EKKKKKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKEDAEE 569
           EKKKKKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKEDAEE
Sbjct: 541 EKKKKKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKEDAEE 584

[Close]

BLAST of Cp4.1LG03g02310 vs. NCBI nr
Match: XP_022934839.1 (H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita moschata])

HSP 1 Score: 1050 bits (2714), Expect = 0.0
Identity = 562/580 (96.90%), Postives = 563/580 (97.07%), Query Frame = 0


Query: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL 60
           MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL
Sbjct: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLVDYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120
           KNYDRLNVRTGHYTPLPSGFSPLKRPL DYIRYGILNLDKPANPSSHEVVAWIKRILRVE
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEX----- 300
           LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLE      
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 -----KDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
                KDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL 420
           TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL
Sbjct: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL 420

Query: 421 VLPTGGDSLVASVFATDSATVDEGKQETEKDGGGRKRKHDEETEAAPAKKLKAEKTEDAE 480
           VLPTGGDSLVASVFA+DSATVDEGKQETEKDGGGRKRK DEETEAAPAKKLKAEKTEDAE
Sbjct: 421 VLPTGGDSLVASVFASDSATVDEGKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTEDAE 480

Query: 481 EVEEGGKKEKKKKKKDKEKGSGEPSDEENTERSEKKKKKKDKEGKEAGTPE-TPKSEKKK 540
           EVEEGGKKEKKKKKKDKEKGSGEPSDEENT R EKKKKKKDKEGKEAGTPE T KSEKKK
Sbjct: 481 EVEEGGKKEKKKKKKDKEKGSGEPSDEENTVRLEKKKKKKDKEGKEAGTPEETQKSEKKK 540

Query: 541 KKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKEDAEE 569
           KKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKEDAEE
Sbjct: 541 KKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKEDAEE 580

[Close]

BLAST of Cp4.1LG03g02310 vs. NCBI nr
Match: KAG7017302.1 (H/ACA ribonucleoprotein complex subunit 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1047 bits (2707), Expect = 0.0
Identity = 561/580 (96.72%), Postives = 562/580 (96.90%), Query Frame = 0


Query: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL 60
           MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL
Sbjct: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLVDYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120
           KNYDRLNVRTGHYTPLPSGFSPLKRPL DYIRYGILNLDKPANPSSHEVVAWIKRILRVE
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEX----- 300
           LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLE      
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 -----KDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
                KDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL 420
           TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL
Sbjct: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL 420

Query: 421 VLPTGGDSLVASVFATDSATVDEGKQETEKDGGGRKRKHDEETEAAPAKKLKAEKTEDAE 480
           VLPTGGDSLVASVFA+DSATVDEGKQETEKDGGGRKRK DEETEAAPAKKLKAEKTEDAE
Sbjct: 421 VLPTGGDSLVASVFASDSATVDEGKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTEDAE 480

Query: 481 EVEEGGKKEKKKKKKDKEKGSGEPSDEENTERSEKKKKKKDKEGKEAGTPE-TPKSEKKK 540
           EVEEGGKKEKKKKKKDKEKGSGEPSDEENT R EKKKKKKDK GKEAGTPE T KSEKKK
Sbjct: 481 EVEEGGKKEKKKKKKDKEKGSGEPSDEENTVRLEKKKKKKDKGGKEAGTPEETQKSEKKK 540

Query: 541 KKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKEDAEE 569
           KKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKEDAEE
Sbjct: 541 KKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKEDAEE 580

[Close]

BLAST of Cp4.1LG03g02310 vs. NCBI nr
Match: KAG6580549.1 (H/ACA ribonucleoprotein complex subunit 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 1045 bits (2703), Expect = 0.0
Identity = 560/580 (96.55%), Postives = 562/580 (96.90%), Query Frame = 0


Query: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL 60
           MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL
Sbjct: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLVDYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120
           KNYDRLNVRTGHYTPLPSGFSPLKRPL DYIRYGILNLDKPANPSSHEVVAWIKRILRVE
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEX----- 300
           LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLE      
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 -----KDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
                KDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL 420
           TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL
Sbjct: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL 420

Query: 421 VLPTGGDSLVASVFATDSATVDEGKQETEKDGGGRKRKHDEETEAAPAKKLKAEKTEDAE 480
           VLPTGGDSLVASVFATDSATVDEGKQETEKDGGGRKRK DEETEAAPAKKLKAEKTEDAE
Sbjct: 421 VLPTGGDSLVASVFATDSATVDEGKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTEDAE 480

Query: 481 EVEEGGKKEKKKKKKDKEKGSGEPSDEENTERSEKKKKKKDKEGKEAGT-PETPKSEKKK 540
           EVEEGGKKEKKKKKKDKEKGSGEPSDEENT R EKKKKKKDKEGKEAGT  ET KSE+KK
Sbjct: 481 EVEEGGKKEKKKKKKDKEKGSGEPSDEENTVRLEKKKKKKDKEGKEAGTLEETQKSEEKK 540

Query: 541 KKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKEDAEE 569
           KKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKED+EE
Sbjct: 541 KKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKEDSEE 580

[Close]

BLAST of Cp4.1LG03g02310 vs. NCBI nr
Match: XP_022983194.1 (H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita maxima])

HSP 1 Score: 1039 bits (2686), Expect = 0.0
Identity = 561/581 (96.56%), Postives = 562/581 (96.73%), Query Frame = 0


Query: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL 60
           MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTP VDTSQWPILL
Sbjct: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPSVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLVDYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120
           KNYDRLNVRTGHYTPLPSGFSPLKRPL DYIRYGILNLDKPANPSSHEVVAWIKRILRVE
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEX----- 300
           LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLE      
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 -----KDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
                KDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL 420
           TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL
Sbjct: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL 420

Query: 421 VLPTGGDSLVASVFATDSATVDEGKQETEKDGGGRKRKHDEETEAAPAKKLKAEKTEDAE 480
           VLPTGGDSLVASVFATDSATVDEGKQETEKDGGGRKRK DEETEAAPAKKLKAEKTEDAE
Sbjct: 421 VLPTGGDSLVASVFATDSATVDEGKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTEDAE 480

Query: 481 EVEEGGKKEKKKKKK-DKEKGSGEPSDEENTERSEKKKKKKDKEGKEAGTPETP-KSEKK 540
           EVEEGGKKEKKKKKK DKEKGSGEPSDEENTE+SEKKKKK DKEGKEAGTPE   KSEKK
Sbjct: 481 EVEEGGKKEKKKKKKKDKEKGSGEPSDEENTEQSEKKKKK-DKEGKEAGTPEEKQKSEKK 540

Query: 541 KKKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKEDAEE 569
           KKKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKEDAEE
Sbjct: 541 KKKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKEDAEE 580

[Close]

BLAST of Cp4.1LG03g02310 vs. ExPASy TrEMBL
Match: A0A6J1F3Q2 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=LOC111441884 PE=3 SV=1)

HSP 1 Score: 1050 bits (2714), Expect = 0.0
Identity = 562/580 (96.90%), Postives = 563/580 (97.07%), Query Frame = 0


Query: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL 60
           MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL
Sbjct: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLVDYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120
           KNYDRLNVRTGHYTPLPSGFSPLKRPL DYIRYGILNLDKPANPSSHEVVAWIKRILRVE
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEX----- 300
           LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLE      
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 -----KDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
                KDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL 420
           TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL
Sbjct: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL 420

Query: 421 VLPTGGDSLVASVFATDSATVDEGKQETEKDGGGRKRKHDEETEAAPAKKLKAEKTEDAE 480
           VLPTGGDSLVASVFA+DSATVDEGKQETEKDGGGRKRK DEETEAAPAKKLKAEKTEDAE
Sbjct: 421 VLPTGGDSLVASVFASDSATVDEGKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTEDAE 480

Query: 481 EVEEGGKKEKKKKKKDKEKGSGEPSDEENTERSEKKKKKKDKEGKEAGTPE-TPKSEKKK 540
           EVEEGGKKEKKKKKKDKEKGSGEPSDEENT R EKKKKKKDKEGKEAGTPE T KSEKKK
Sbjct: 481 EVEEGGKKEKKKKKKDKEKGSGEPSDEENTVRLEKKKKKKDKEGKEAGTPEETQKSEKKK 540

Query: 541 KKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKEDAEE 569
           KKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKEDAEE
Sbjct: 541 KKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKEDAEE 580

[Close]

BLAST of Cp4.1LG03g02310 vs. ExPASy TrEMBL
Match: A0A6J1J6M3 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LOC111481852 PE=3 SV=1)

HSP 1 Score: 1039 bits (2686), Expect = 0.0
Identity = 561/581 (96.56%), Postives = 562/581 (96.73%), Query Frame = 0


Query: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL 60
           MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTP VDTSQWPILL
Sbjct: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPSVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLVDYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120
           KNYDRLNVRTGHYTPLPSGFSPLKRPL DYIRYGILNLDKPANPSSHEVVAWIKRILRVE
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEX----- 300
           LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLE      
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 -----KDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
                KDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL 420
           TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL
Sbjct: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL 420

Query: 421 VLPTGGDSLVASVFATDSATVDEGKQETEKDGGGRKRKHDEETEAAPAKKLKAEKTEDAE 480
           VLPTGGDSLVASVFATDSATVDEGKQETEKDGGGRKRK DEETEAAPAKKLKAEKTEDAE
Sbjct: 421 VLPTGGDSLVASVFATDSATVDEGKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTEDAE 480

Query: 481 EVEEGGKKEKKKKKK-DKEKGSGEPSDEENTERSEKKKKKKDKEGKEAGTPETP-KSEKK 540
           EVEEGGKKEKKKKKK DKEKGSGEPSDEENTE+SEKKKKK DKEGKEAGTPE   KSEKK
Sbjct: 481 EVEEGGKKEKKKKKKKDKEKGSGEPSDEENTEQSEKKKKK-DKEGKEAGTPEEKQKSEKK 540

Query: 541 KKKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKEDAEE 569
           KKKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKEDAEE
Sbjct: 541 KKKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKEDAEE 580

[Close]

BLAST of Cp4.1LG03g02310 vs. ExPASy TrEMBL
Match: A0A6J1CVU2 (H/ACA ribonucleoprotein complex subunit 4 OS=Momordica charantia OX=3673 GN=LOC111015035 PE=3 SV=1)

HSP 1 Score: 973 bits (2516), Expect = 0.0
Identity = 523/585 (89.40%), Postives = 543/585 (92.82%), Query Frame = 0


Query: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL 60
           MS VEISRSEKKKKKHRSKD++VSPAVGSDEQP KD ADFMIKPQSFTPPVDTSQWPILL
Sbjct: 1   MSEVEISRSEKKKKKHRSKDEDVSPAVGSDEQPQKDAADFMIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLVDYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120
           KNYDRLNVRTGHYTPLPSG+SPLKRPL +YIRYGILNLDKPANPSSHEVVAWIKRILRV+
Sbjct: 61  KNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC+ARLHSSVPDV+KV+RALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSSVPDVAKVSRALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDA+KHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEX----- 300
           LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLE      
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 -----KDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
                KDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTT+VMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMA 360

Query: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL 420
           TCDHG+VAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNE TP EW+RNL
Sbjct: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420

Query: 421 VLPTGGDSLVASVFATDSATVDEGKQETEKDGGGRKRKHDEETEAAPAKKLKAEKTEDAE 480
           VLPTGGDSLVAS FA D+A  DEGKQETEKDGGGRKRK DE+ EAAP KKLK EK E+AE
Sbjct: 421 VLPTGGDSLVASHFAADAA--DEGKQETEKDGGGRKRKLDEDMEAAPTKKLKTEKAEEAE 480

Query: 481 EVEEGGKKEKKKKKKDKEKGSGEPSDEENTERSEKKKKKKDKEGKEAGTPETPKSEKKKK 540
           EV+E GKKEKKKKKKDKEKG+ EP+DEEN E+SEKKKKKKDKE KEAGTPET KSEKKKK
Sbjct: 481 EVDEVGKKEKKKKKKDKEKGNVEPADEENVEKSEKKKKKKDKEAKEAGTPETEKSEKKKK 540

Query: 541 KKDKESG------VGDVQNGEADDHVDGSEKKKKKKKKNKEDAEE 569
           KKDKESG         +QNGEAD HVDGSEKKKKKKKKNK DAEE
Sbjct: 541 KKDKESGNDHSQSPAGIQNGEADGHVDGSEKKKKKKKKNK-DAEE 582

[Close]

BLAST of Cp4.1LG03g02310 vs. ExPASy TrEMBL
Match: A0A6J1FP65 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=LOC111446978 PE=3 SV=1)

HSP 1 Score: 957 bits (2475), Expect = 0.0
Identity = 522/584 (89.38%), Postives = 542/584 (92.81%), Query Frame = 0


Query: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL 60
           MS VEISRSEKKKKKHRSKD+EVSP VGSDEQP KDVADF+IKPQSFTPPVDTSQWPILL
Sbjct: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLVDYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120
           KNYDRLNVRTGHYTPLPSGFSPLKRPL+DYIRYGILNLDKPANPSSHEVVAWIKRILRV+
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHS+VPDV+KVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEX----- 300
           LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLE      
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 -----KDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
                KDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL 420
           TCDHG+VAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNE TP EW+RNL
Sbjct: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420

Query: 421 VLPTGGDSLVASVFATDSATVDEG-KQETEKDGGGRKRKHDEETEAA-PAKKLKAEKTED 480
           VLPTGGDSLVASVFA+D+AT  +    + EKDG GRKRKHDEETEAA PAKKLK EK E+
Sbjct: 421 VLPTGGDSLVASVFASDTATPKQSVAADEEKDGVGRKRKHDEETEAAAPAKKLKGEKVEE 480

Query: 481 AEEVEEGGKKEKKKKKKDKEKGSGEPSDEENTERSEKKKKKKDKEGKE-AGTPETPKSEK 540
           AEE+EE GKKEKKKKKKDKEKG  E SD+E  E+SEKKKKKKDK+ KE AGTPET KSEK
Sbjct: 481 AEEIEESGKKEKKKKKKDKEKGGIEASDDEKAEKSEKKKKKKDKDAKEEAGTPETEKSEK 540

Query: 541 KKKKK-DKESGVGDVQNGEADDHVDG-SEKKKKKKKKNKEDAEE 569
           KKKKK DKESG  D QNGEA+ HVDG SEKKKKKKKKNKE+A+E
Sbjct: 541 KKKKKKDKESG-NDTQNGEAEGHVDGGSEKKKKKKKKNKEEADE 583

[Close]

BLAST of Cp4.1LG03g02310 vs. ExPASy TrEMBL
Match: A0A6J1I1U9 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LOC111470135 PE=3 SV=1)

HSP 1 Score: 948 bits (2450), Expect = 0.0
Identity = 514/580 (88.62%), Postives = 533/580 (91.90%), Query Frame = 0


Query: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL 60
           MS VEISRSEKKKKKHRSKD+EVSP V SDEQP KDVADF+IKPQSFTPPVDTSQWPILL
Sbjct: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVASDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLVDYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120
           KNYDRLNVRTGHYTPLPSGFSPLKRPL+DYIRYGILNLDKPANPSSHEVVAWIKRILRV+
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHS+VPDV+KVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEX----- 300
           LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLE      
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 -----KDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
                KDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL 420
           TCDHG+VAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNE TP EW+RNL
Sbjct: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420

Query: 421 VLPTGGDSLVASVFATDSATVDEG-KQETEKDGGGRKRKHDEETEAA-PAKKLKAEKTED 480
           VLPTGGDSLVASVFA+D+AT  +    + EKDG G+KRKHDEETEAA PAKKLK EK E+
Sbjct: 421 VLPTGGDSLVASVFASDTATPKQNVAADEEKDGVGQKRKHDEETEAAAPAKKLKGEKAEE 480

Query: 481 AEEVEEGGKKEKKKKKKDKEKGSGEPSDEENTERSEKKKKKKDKEGKEAGTPETPKSEKK 540
           AEEVEE GKKEKKKKKKDKEKG  E SD+E  E+ EKKKKKKDK+ KEAGTPET KSEKK
Sbjct: 481 AEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKPEKKKKKKDKDAKEAGTPETEKSEKK 540

Query: 541 KKKK-DKESGVGDVQNGEADDHVDGSEKKKKKKKKNKEDA 567
           KKKK DKESG  D QNGEAD HVDG  +KKKK   NKE+A
Sbjct: 541 KKKKKDKESG-NDTQNGEADGHVDGGSEKKKK---NKEEA 576

[Close]

BLAST of Cp4.1LG03g02310 vs. TAIR 10
Match: AT3G57150.1 (homologue of NAP57 )

HSP 1 Score: 753.4 bits (1944), Expect = 1.3e-217
Identity = 422/586 (72.01%), Postives = 477/586 (81.40%), Query Frame = 0


Query: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL 60
           M+ V+IS S KKKK+ ++++D              D  D+MIKPQSFTP +DTSQWPILL
Sbjct: 1   MAEVDISHS-KKKKQDKTENDAA------------DTGDYMIKPQSFTPAIDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLVDYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120
           KNYDRLNVRTGHYTP+ +G SPLKRPL +YIRYG++NLDKPANPSSHEVVAWIKRILRVE
Sbjct: 61  KNYDRLNVRTGHYTPISAGHSPLKRPLQEYIRYGVINLDKPANPSSHEVVAWIKRILRVE 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHS+VPDV+KVARALE+L
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALESL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDAD+HLVVFW+SCEAGTY+RT+CVHLGL+
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADRHLVVFWVSCEAGTYIRTMCVHLGLL 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLE------ 300
           LGVGGHMQELRRVRSGILGE +NMVTMHDVMDAQ+VYDN +DESYLRRVIMPLE      
Sbjct: 241 LGVGGHMQELRRVRSGILGENNNMVTMHDVMDAQFVYDNSRDESYLRRVIMPLEMILTSY 300

Query: 301 ----XKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
                KDSAVNAICYGAKLMIPGLLRFENDI+VG EVVLMTTKGEAIA+GIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMA 360

Query: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL 420
           TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLI +GKLDKHGKPNEKTP EW RN+
Sbjct: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIADGKLDKHGKPNEKTPVEWSRNV 420

Query: 421 VLPTGGDSLVASVFATDSATVDEGKQETE--KDGGGRKRKHDEETEAAPAKKLKAEKTE- 480
           VLPTGGD+++A      +A  +E K + E  + G  RKRKHD+ +++      K  KT+ 
Sbjct: 421 VLPTGGDAIIAGA----AAAPEEIKADAENGEAGEARKRKHDDSSDSPAPVTTKKSKTKE 480

Query: 481 -DAEEVEEGGKKEKKKKKKDKEKGSGEPSDEENTERSEKKKKKKDKEGKEAGTPETPKSE 540
            + EE EE  K  KKKKKKDKE    E  +EE     ++KKKKKDK+ +      +PKSE
Sbjct: 481 VEGEEAEEKVKSSKKKKKKDKE----EEKEEEAGSEKKEKKKKKDKKEEVIEEVASPKSE 540

Query: 541 KKKKKKDKESGVG-DVQNGEADDHVDGSEKKKKKKKKNK--EDAEE 570
           KKKKKK K++    D ++  A +  +  +KKK KKKKNK  ED EE
Sbjct: 541 KKKKKKSKDTEAAVDAEDESAAEKSEKKKKKKDKKKKNKDSEDDEE 565

[Close]

BLAST of Cp4.1LG03g02310 vs. TAIR 10
Match: AT5G14460.1 (Pseudouridine synthase family protein )

HSP 1 Score: 97.1 bits (240), Expect = 5.0e-20
Identity = 62/202 (30.69%), Postives = 99/202 (49.01%), Query Frame = 0


Query: 95  ILNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 154
           +L ++KP   +S  V   ++R+++V+K GH+GTLDP  TG LIVC+ +AT++V   QG  
Sbjct: 323 VLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMI 382

Query: 155 KEYVCVARLHSSVPDV-----------------SKVARALETLTGAVFQRPPLISAVK-- 214
           K Y  V RL  +   +                   + +AL +  G ++Q PP+ SA+K  
Sbjct: 383 KGYSGVFRLGEATSTLDADSPVIQRESWEHIKDDDIKKALTSFLGEIWQVPPMFSAIKVG 442

Query: 215 ------RQLRIRTIYES----KLLEYDADKHL-----VVFWISCEAGTYVRTLCVHLGLI 263
                 +  R  T+  S     + ++D ++ L     ++F + C  GTY+R+LC  L   
Sbjct: 443 GEKMYEKARRGETVELSPRRISIFQFDIERSLDDRQNLIFRVICSKGTYIRSLCADLAKA 502

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g02310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LD90	1.8e-216	72.01	H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=CBF...	[more]
Q54T81	3.5e-167	57.55	Probable H/ACA ribonucleoprotein complex subunit 4 OS=Dictyostelium discoideum O...	[more]
Q5ZJH9	4.5e-167	62.82	H/ACA ribonucleoprotein complex subunit DKC1 OS=Gallus gallus OX=9031 GN=DKC1 PE...	[more]
O60832	1.8e-163	59.05	H/ACA ribonucleoprotein complex subunit DKC1 OS=Homo sapiens OX=9606 GN=DKC1 PE=...	[more]
Q9ESX5	5.2e-163	60.19	H/ACA ribonucleoprotein complex subunit DKC1 OS=Mus musculus OX=10090 GN=Dkc1 PE...	[more]

BLAST of Cp4.1LG03g02310 vs. NCBI nr


Match Name	Identity	Description
XP_023527935.1	97.26	LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita p...	[more]
XP_022934839.1	96.90	H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita moschata]	[more]
KAG7017302.1	96.72	H/ACA ribonucleoprotein complex subunit 4, partial [Cucurbita argyrosperma subsp...	[more]
KAG6580549.1	96.55	H/ACA ribonucleoprotein complex subunit 4, partial [Cucurbita argyrosperma subsp...	[more]
XP_022983194.1	96.56	H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG03g02310 vs. ExPASy TrEMBL


Match Name	Identity	Description
A0A6J1F3Q2	96.90	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1J6M3	96.56	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1CVU2	89.40	H/ACA ribonucleoprotein complex subunit 4 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1FP65	89.38	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1I1U9	88.62	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of Cp4.1LG03g02310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57150.1	1.3e-217	72.01	homologue of NAP57	[more]
AT5G14460.1	5.0e-20	30.69	Pseudouridine synthase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 549..568
None	No IPR available	GENE3D	3.30.2350.10	Pseudouridine synthase	coord: 86..292 e-value: 6.1E-171 score: 569.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 426..568
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 431..553
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	PROSITE	PS50890	PUA	coord: 295..364 score: 17.531813
None	No IPR available	CDD	cd02572	PseudoU_synth_hDyskerin	coord: 92..274 e-value: 1.45925E-134 score: 387.002
IPR002478	PUA domain	SMART	SM00359	pua_5	coord: 287..364 e-value: 6.7E-19 score: 78.8
IPR002478	PUA domain	PFAM	PF01472	PUA	coord: 295..362 e-value: 1.1E-19 score: 70.2
IPR012960	Dyskerin-like	SMART	SM01136	DKCLD_2	coord: 52..110 e-value: 9.4E-32 score: 121.5
IPR012960	Dyskerin-like	PFAM	PF08068	DKCLD	coord: 53..110 e-value: 2.7E-30 score: 104.2
IPR002501	Pseudouridine synthase II, N-terminal	PFAM	PF01509	TruB_N	coord: 114..230 e-value: 1.1E-19 score: 71.3
IPR032819	tRNA pseudouridylate synthase B, C-terminal	PFAM	PF16198	TruB_C_2	coord: 231..295 e-value: 3.1E-22 score: 78.5
IPR004802	tRNA pseudouridine synthase B family	TIGRFAM	TIGR00425	TIGR00425	coord: 60..374 e-value: 2.6E-150 score: 497.9
IPR004802	tRNA pseudouridine synthase B family	PANTHER	PTHR23127	CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5	coord: 10..512
IPR036974	PUA domain superfamily	GENE3D	2.30.130.10	PUA domain	coord: 53..373 e-value: 6.1E-171 score: 569.8
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 53..296
IPR015947	PUA-like superfamily	SUPERFAMILY	88697	PUA domain-like	coord: 295..370

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g02310.1	Cp4.1LG03g02310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000495	box H/ACA RNA 3'-end processing
biological_process	GO:1990481	mRNA pseudouridine synthesis
biological_process	GO:0031118	rRNA pseudouridine synthesis
biological_process	GO:0031120	snRNA pseudouridine synthesis
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0009451	RNA modification
biological_process	GO:0006396	RNA processing
cellular_component	GO:0031429	box H/ACA snoRNP complex
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding