Cp4.1LG03g02230 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g02230
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	mitochondrial import inner membrane translocase subunit Tim9
Location	Cp4.1LG03: 604202 .. 606611 (-)
RNA-Seq Expression	Cp4.1LG03g02230
Synteny	Cp4.1LG03g02230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGGGGCTGAAATGGAAAATATACGAACATTGAAGGACCATTTAGCAAAAAAACTATTACGCTCTCTCCAACTTATAATTCCAACCTAGCTGAGCTGATAGCGGCGATACAGAGAAGGGAGAAGAAACCAGAGAAGTTGAACCCTAAACCCTTTGCTTTCTTTGGAATCGAAGATGGACAAGAACATGCTTGCTGATTTGGAGGGTCTTCCTGAAGAAGACAAGCTCAAAATGGCCACCATGATCGACCAGCTCCAGATTCGAGACAGGTTCTATTTATTTATCTAAAAACTTCGAGTTTTGAAGAGGAACTAATTTATTGAATCATTCTCTTGTTATGAATGTTGTTTCTTTCTCCACGTGTTGTTTCTTTCGTTCTCCATCTGGAATTTGTCTCCGATAACTGATGATTTTTGTGGGTGGCAATATGATCTGGGATTAATATGGTAGAAAATCTGGCTTTGTTTGTCTCTCGTCAACTGATGACTTTTATGAATGTCCAAGCGCATTCCACAAATTGCCTTCGTTTGTTGGTTGGAAATTTTTGGAATACGCTTGGACGTCTTTGAATGAGCCGTAGAAGGATTGGAAGTGTTCTAGATACTGGTCAATTTTGTGGGGGGCGATATAGAAATTTGTTTTTGGGGGTTTTGTGATTATGAAGCAGCCAGAATAAGAGCTTCTAGCGCGGTACCACAGCTTGAAACTTGCATGACATGCGCTGAGAAAGATCTAGCTAGTTAAATTTCCTCTACCAGATTTTGGGGGCTTGTTTTACTGTATCCTGCTTCTGTTTTGTTTGTATAATTTGATTATATTTTTGCTGAGGTTTTGAGACCACCTTTTAGAGATTCACTGGATTGATTTAGGGGTCAATAAGAGTAAATGTAGATGGTAAATCACTTACCAGGAATGAGCCCAAATCATGTTTATCTCCTAGAAATTTAATATCCTTTTAATTGTCTTGGCAAACAAATTAGACAACCAAATGTGGTAGGGGGAGAAAATTAGCCTTTGAGAATAGTTAAGGTGAACACAAGGTAGGGTGAGATGTGTGTATATATATATATATGAAAAGATCACCTTATGATAGTATCACTTATTTGTTTACTTTCTAAATAATATGTATTGGCTCGTGCGCTATTAGTGTAACAGCCCAAACCCACCGCTAAACAGATATTGTCCGCTTTGATTCGTTAGTATCGTCGTCAGCCTCGCGGTTTTAAAACGCGTCTGCTAGGGAGAGGTTTCCACACTCTTATAAAGAATGCTTCGTTCCCCTCTCCAACCGATGTGGGATCTCACAATTCACCCCCCTTTGGAGCGTAGCATCCTTGCTGTTACTCTTTCCCCTCTCCAACTGATGTAGGATCTCACCGTTAGTCTATTCAGCGACCATGCACCCTGGCCAGTGGCCACAGGAGCTCAAAGTTCGTACCTCCTGGTACCCCAAGTTAACCAACAGAGATTCAGGGCTTTTCCTTCTTTTGTGTGACAGGTTTCAATATTCTGAAATCTCGTCTGAACTACGATTTCCTTCTGAATATACTCCAAAAAAGGGAACTGTTGGAGTTCTAGGGAGTGATATTGATTTGATCTTGGATTAATATATCTTTGGAAGCTGAAGTAAGATGCCGTATAATTTATATTGAAAAGAAGACTGCACAAGACTACAGTGCACTACTGCAGCTCTTTTGCTCCATTTTAATTTATGTTAGCATCCAATTTATGATGACCACAATAATATCATAACACATTCAGAGTGATAACTGTTTGCCTTCTAATAAATTGCAGTCTGAGAATGTACAACTCATTGGTCGAGAGATGCTTTGCGGATTGCATAGACAACTTTCAGCGAAAGTCCCTAACGAAGCAAGAGGAAACATGTGTACGTAGGTGTGCCGAGAAGTTCTTGAAGCACTCAATGCGCGTTGGAATGAGATTTGCTGAGCTCAACCAAGGAGCCGCTACCTCAGATTAGTGTAGCATCAGAGGACACCCAGACATATTCTTGAGACCTTCAGTTCTTTCACCTCTGGAATTATAGTATGTTTCTTCCATATTCTTGAAACCTTCAGTGCTTTCACCTCTGGATTTATAATAGCACGTCTTCCATAAATGTTGCAACTGGGATTAAGTGGTGATTTGATTTGACTTATATATTAAAGTTTTAGTAGCAGACTTTCAATAAATGTTTGAGATTTGATATCCATTAGGATGATTTAACTTAGTTTTTTGCTTATTGCTGGTAATATGGCCTTTTCTTCAACTTCATAACCAATTTGATAGAAAAATGATTGGAGATCAAATCTTGAACAGTTAGATGAACTGCAATTGGTTGGGTTTGTTTGGCAGAGCCTTCTGATGAACGCACTTCATTCTTCATCTAATCTAAGCATCTCATGCTTGGG

mRNA sequence

TAGGGGCTGAAATGGAAAATATACGAACATTGAAGGACCATTTAGCAAAAAAACTATTACGCTCTCTCCAACTTATAATTCCAACCTAGCTGAGCTGATAGCGGCGATACAGAGAAGGGAGAAGAAACCAGAGAAGTTGAACCCTAAACCCTTTGCTTTCTTTGGAATCGAAGATGGACAAGAACATGCTTGCTGATTTGGAGGGTCTTCCTGAAGAAGACAAGCTCAAAATGGCCACCATGATCGACCAGCTCCAGATTCGAGACAGTCTGAGAATGTACAACTCATTGGTCGAGAGATGCTTTGCGGATTGCATAGACAACTTTCAGCGAAAGTCCCTAACGAAGCAAGAGGAAACATGTGTACGTAGGTGTGCCGAGAAGTTCTTGAAGCACTCAATGCGCGTTGGAATGAGATTTGCTGAGCTCAACCAAGGAGCCGCTACCTCAGATTAGTGTAGCATCAGAGGACACCCAGACATATTCTTGAGACCTTCAGTTCTTTCACCTCTGGAATTATAGTATGTTTCTTCCATATTCTTGAAACCTTCAGTGCTTTCACCTCTGGATTTATAATAGCACGTCTTCCATAAATGTTGCAACTGGGATTAAGTGGTGATTTGATTTGACTTATATATTAAAGTTTTAGTAGCAGACTTTCAATAAATGTTTGAGATTTGATATCCATTAGGATGATTTAACTTAGTTTTTTGCTTATTGCTGGTAATATGGCCTTTTCTTCAACTTCATAACCAATTTGATAGAAAAATGATTGGAGATCAAATCTTGAACAGTTAGATGAACTGCAATTGGTTGGGTTTGTTTGGCAGAGCCTTCTGATGAACGCACTTCATTCTTCATCTAATCTAAGCATCTCATGCTTGGG

Coding sequence (CDS)

ATGGACAAGAACATGCTTGCTGATTTGGAGGGTCTTCCTGAAGAAGACAAGCTCAAAATGGCCACCATGATCGACCAGCTCCAGATTCGAGACAGTCTGAGAATGTACAACTCATTGGTCGAGAGATGCTTTGCGGATTGCATAGACAACTTTCAGCGAAAGTCCCTAACGAAGCAAGAGGAAACATGTGTACGTAGGTGTGCCGAGAAGTTCTTGAAGCACTCAATGCGCGTTGGAATGAGATTTGCTGAGCTCAACCAAGGAGCCGCTACCTCAGATTAG

Protein sequence

MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD

Homology

[Close]

BLAST of Cp4.1LG03g02230 vs. ExPASy Swiss-Prot
Match: Q9XGX8 (Mitochondrial import inner membrane translocase subunit Tim9 OS=Mesembryanthemum crystallinum OX=3544 GN=TIM9 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 2.6e-40
Identity = 78/93 (83.87%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 1  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQE 60
          MDKNML DL+ LPEEDKLKMA+MI+QLQIRDSLRMYN+LVERCF DC+D+F+RK+L KQE
Sbjct: 1  MDKNMLGDLDNLPEEDKLKMASMIEQLQIRDSLRMYNNLVERCFTDCVDSFRRKTLDKQE 60

Query: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD 94
          ETCV+RCAEKFLKHSMRVG+RFAELNQGAAT+D
Sbjct: 61 ETCVKRCAEKFLKHSMRVGLRFAELNQGAATTD 93

[Close]

BLAST of Cp4.1LG03g02230 vs. ExPASy Swiss-Prot
Match: Q9XGX7 (Mitochondrial import inner membrane translocase subunit Tim9 OS=Oryza sativa subsp. japonica OX=39947 GN=TIM9 PE=3 SV=2)

HSP 1 Score: 164.1 bits (414), Expect = 7.7e-40
Identity = 77/93 (82.80%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 1  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQE 60
          MDK+ML DL+GLPEEDK++MA M+DQLQIRDSLRMYNSLVERCF DC+D F+RK+L KQE
Sbjct: 1  MDKSMLGDLDGLPEEDKMRMAAMVDQLQIRDSLRMYNSLVERCFTDCVDTFRRKTLDKQE 60

Query: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD 94
          E+CVRRCAEKFLKHSMRVGMRFAELNQG AT D
Sbjct: 61 ESCVRRCAEKFLKHSMRVGMRFAELNQGVATPD 93

[Close]

BLAST of Cp4.1LG03g02230 vs. ExPASy Swiss-Prot
Match: Q9XGX9 (Mitochondrial import inner membrane translocase subunit TIM9 OS=Arabidopsis thaliana OX=3702 GN=TIM9 PE=1 SV=2)

HSP 1 Score: 156.4 bits (394), Expect = 1.6e-37
Identity = 75/93 (80.65%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 1  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQE 60
          MD +M+A L+GLPEEDK KMA+MIDQLQ+RDSLRMYNSLVERCF DC+D+F RKSL KQE
Sbjct: 1  MDASMMAGLDGLPEEDKAKMASMIDQLQLRDSLRMYNSLVERCFVDCVDSFTRKSLQKQE 60

Query: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD 94
          ETCV RCAEKFLKH+MRVGMRFAELNQ A T D
Sbjct: 61 ETCVMRCAEKFLKHTMRVGMRFAELNQNAPTQD 93

[Close]

BLAST of Cp4.1LG03g02230 vs. ExPASy Swiss-Prot
Match: Q757S0 (Mitochondrial import inner membrane translocase subunit TIM9 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=TIM9 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 7.0e-17
Identity = 36/78 (46.15%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 9  LEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCA 68
          ++ L   ++ +   +++Q Q++D +R+Y++LVERCF+DC+++F    LT +E+TC+ RC+
Sbjct: 1  MDALNSREQQEFQRVVEQKQMKDFMRLYSNLVERCFSDCVNDFTSSKLTSKEQTCIMRCS 60

Query: 69 EKFLKHSMRVGMRFAELN 87
          EKFLKHS RVG RF E N
Sbjct: 61 EKFLKHSERVGQRFQEQN 78

[Close]

BLAST of Cp4.1LG03g02230 vs. ExPASy Swiss-Prot
Match: P57745 (Mitochondrial import inner membrane translocase subunit Tim9 OS=Zygosaccharomyces bailii OX=4954 GN=TIM9 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 9.1e-17
Identity = 36/78 (46.15%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 9  LEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCA 68
          ++ L   ++ + + +I+  Q++D +R+Y++LVERCF DC+++F    LT +E+TC+ RC+
Sbjct: 1  MDSLNPREQQEFSKLIEHKQMKDFMRLYSNLVERCFTDCVNDFTSSKLTSKEQTCISRCS 60

Query: 69 EKFLKHSMRVGMRFAELN 87
          EKFLKHS RVG+RF E N
Sbjct: 61 EKFLKHSERVGLRFQEQN 78

[Close]

BLAST of Cp4.1LG03g02230 vs. NCBI nr
Match: XP_022934857.1 (mitochondrial import inner membrane translocase subunit Tim9 [Cucurbita moschata] >XP_022983427.1 mitochondrial import inner membrane translocase subunit Tim9 [Cucurbita maxima] >XP_023528173.1 mitochondrial import inner membrane translocase subunit Tim9 [Cucurbita pepo subsp. pepo] >KAG6580543.1 Mitochondrial import inner membrane translocase subunit Tim9, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017295.1 Mitochondrial import inner membrane translocase subunit Tim9 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186 bits (473), Expect = 1.89e-59
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQE 60
          MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQE
Sbjct: 1  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQE 60

Query: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD 93
          ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
Sbjct: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD 93

[Close]

BLAST of Cp4.1LG03g02230 vs. NCBI nr
Match: XP_004137789.1 (mitochondrial import inner membrane translocase subunit Tim9 [Cucumis sativus] >XP_008442550.1 PREDICTED: mitochondrial import inner membrane translocase subunit Tim9 [Cucumis melo] >XP_038902990.1 mitochondrial import inner membrane translocase subunit Tim9 [Benincasa hispida] >KAA0044090.1 Mitochondrial import inner membrane translocase subunit Tim9 [Cucumis melo var. makuwa] >KGN58871.1 hypothetical protein Csa_000826 [Cucumis sativus] >TYK25047.1 Mitochondrial import inner membrane translocase subunit Tim9 [Cucumis melo var. makuwa])

HSP 1 Score: 183 bits (464), Expect = 4.47e-58
Identity = 90/93 (96.77%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQE 60
          MDKNMLADL+GLPEEDK+KMATMIDQLQIRDSLRMYNSLVERCF DCIDNFQRKSLTKQE
Sbjct: 1  MDKNMLADLDGLPEEDKIKMATMIDQLQIRDSLRMYNSLVERCFTDCIDNFQRKSLTKQE 60

Query: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD 93
          ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
Sbjct: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD 93

[Close]

BLAST of Cp4.1LG03g02230 vs. NCBI nr
Match: XP_022145535.1 (mitochondrial import inner membrane translocase subunit Tim9-like [Momordica charantia])

HSP 1 Score: 179 bits (454), Expect = 1.50e-56
Identity = 88/93 (94.62%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQE 60
          MDK+MLADL+GLP+EDKLKMA+MIDQLQIRDSLRMYNSLVERCF DCIDNFQRKSLTKQE
Sbjct: 1  MDKSMLADLDGLPDEDKLKMASMIDQLQIRDSLRMYNSLVERCFTDCIDNFQRKSLTKQE 60

Query: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD 93
          ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
Sbjct: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD 93

[Close]

BLAST of Cp4.1LG03g02230 vs. NCBI nr
Match: PON38573.1 (Tim10/DDP family zinc finger [Parasponia andersonii] >PON76124.1 Tim10/DDP family zinc finger [Trema orientale])

HSP 1 Score: 174 bits (442), Expect = 1.02e-54
Identity = 86/93 (92.47%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 1  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQE 60
          MDK MLADL+ LPEEDKL+M+TMIDQLQIRDSLRMYNSLVERCF DCID FQRKSLTKQE
Sbjct: 1  MDKTMLADLDSLPEEDKLRMSTMIDQLQIRDSLRMYNSLVERCFTDCIDTFQRKSLTKQE 60

Query: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD 93
          ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
Sbjct: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD 93

[Close]

BLAST of Cp4.1LG03g02230 vs. NCBI nr
Match: XP_042940042.1 (mitochondrial import inner membrane translocase subunit Tim9 [Carya illinoinensis] >KAG2690548.1 hypothetical protein I3760_09G192200 [Carya illinoinensis] >KAG6643177.1 hypothetical protein CIPAW_09G192600 [Carya illinoinensis] >KAG7964792.1 hypothetical protein I3843_09G188700 [Carya illinoinensis])

HSP 1 Score: 172 bits (435), Expect = 1.19e-53
Identity = 83/93 (89.25%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQE 60
          MDK+MLADLE LPEEDK++M+TMI+QLQIRDSLRMYNSLVERCF DC+D FQRKSLTKQE
Sbjct: 1  MDKSMLADLESLPEEDKVRMSTMIEQLQIRDSLRMYNSLVERCFTDCVDTFQRKSLTKQE 60

Query: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD 93
          ETCVRRCAEKFLKHSMRVGMRFAELNQGAAT+D
Sbjct: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATTD 93

[Close]

BLAST of Cp4.1LG03g02230 vs. ExPASy TrEMBL
Match: A0A6J1IZ98 (mitochondrial import inner membrane translocase subunit Tim9 OS=Cucurbita maxima OX=3661 GN=LOC111482033 PE=4 SV=1)

HSP 1 Score: 186 bits (473), Expect = 9.15e-60
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQE 60
          MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQE
Sbjct: 1  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQE 60

Query: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD 93
          ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
Sbjct: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD 93

[Close]

BLAST of Cp4.1LG03g02230 vs. ExPASy TrEMBL
Match: A0A6J1F3Y8 (mitochondrial import inner membrane translocase subunit Tim9 OS=Cucurbita moschata OX=3662 GN=LOC111441897 PE=4 SV=1)

HSP 1 Score: 186 bits (473), Expect = 9.15e-60
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQE 60
          MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQE
Sbjct: 1  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQE 60

Query: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD 93
          ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
Sbjct: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD 93

[Close]

BLAST of Cp4.1LG03g02230 vs. ExPASy TrEMBL
Match: A0A5D3DN53 (Mitochondrial import inner membrane translocase subunit Tim9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001680 PE=4 SV=1)

HSP 1 Score: 183 bits (464), Expect = 2.16e-58
Identity = 90/93 (96.77%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQE 60
          MDKNMLADL+GLPEEDK+KMATMIDQLQIRDSLRMYNSLVERCF DCIDNFQRKSLTKQE
Sbjct: 1  MDKNMLADLDGLPEEDKIKMATMIDQLQIRDSLRMYNSLVERCFTDCIDNFQRKSLTKQE 60

Query: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD 93
          ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
Sbjct: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD 93

[Close]

BLAST of Cp4.1LG03g02230 vs. ExPASy TrEMBL
Match: A0A0A0LFK3 (zf-Tim10_DDP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G734240 PE=4 SV=1)

HSP 1 Score: 183 bits (464), Expect = 2.16e-58
Identity = 90/93 (96.77%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQE 60
          MDKNMLADL+GLPEEDK+KMATMIDQLQIRDSLRMYNSLVERCF DCIDNFQRKSLTKQE
Sbjct: 1  MDKNMLADLDGLPEEDKIKMATMIDQLQIRDSLRMYNSLVERCFTDCIDNFQRKSLTKQE 60

Query: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD 93
          ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
Sbjct: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD 93

[Close]

BLAST of Cp4.1LG03g02230 vs. ExPASy TrEMBL
Match: A0A1S3B5G6 (mitochondrial import inner membrane translocase subunit Tim9 OS=Cucumis melo OX=3656 GN=LOC103486387 PE=4 SV=1)

HSP 1 Score: 183 bits (464), Expect = 2.16e-58
Identity = 90/93 (96.77%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQE 60
          MDKNMLADL+GLPEEDK+KMATMIDQLQIRDSLRMYNSLVERCF DCIDNFQRKSLTKQE
Sbjct: 1  MDKNMLADLDGLPEEDKIKMATMIDQLQIRDSLRMYNSLVERCFTDCIDNFQRKSLTKQE 60

Query: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD 93
          ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
Sbjct: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD 93

[Close]

BLAST of Cp4.1LG03g02230 vs. TAIR 10
Match: AT3G46560.1 (Tim10/DDP family zinc finger protein )

HSP 1 Score: 156.4 bits (394), Expect = 1.1e-38
Identity = 75/93 (80.65%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 1  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQE 60
          MD +M+A L+GLPEEDK KMA+MIDQLQ+RDSLRMYNSLVERCF DC+D+F RKSL KQE
Sbjct: 1  MDASMMAGLDGLPEEDKAKMASMIDQLQLRDSLRMYNSLVERCFVDCVDSFTRKSLQKQE 60

Query: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD 94
          ETCV RCAEKFLKH+MRVGMRFAELNQ A T D
Sbjct: 61 ETCVMRCAEKFLKHTMRVGMRFAELNQNAPTQD 93

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g02230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XGX8	2.6e-40	83.87	Mitochondrial import inner membrane translocase subunit Tim9 OS=Mesembryanthemum...	[more]
Q9XGX7	7.7e-40	82.80	Mitochondrial import inner membrane translocase subunit Tim9 OS=Oryza sativa sub...	[more]
Q9XGX9	1.6e-37	80.65	Mitochondrial import inner membrane translocase subunit TIM9 OS=Arabidopsis thal...	[more]
Q757S0	7.0e-17	46.15	Mitochondrial import inner membrane translocase subunit TIM9 OS=Ashbya gossypii ...	[more]
P57745	9.1e-17	46.15	Mitochondrial import inner membrane translocase subunit Tim9 OS=Zygosaccharomyce...	[more]

BLAST of Cp4.1LG03g02230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022934857.1	1.89e-59	100.00	mitochondrial import inner membrane translocase subunit Tim9 [Cucurbita moschata...	[more]
XP_004137789.1	4.47e-58	96.77	mitochondrial import inner membrane translocase subunit Tim9 [Cucumis sativus] >...	[more]
XP_022145535.1	1.50e-56	94.62	mitochondrial import inner membrane translocase subunit Tim9-like [Momordica cha...	[more]
PON38573.1	1.02e-54	92.47	Tim10/DDP family zinc finger [Parasponia andersonii] >PON76124.1 Tim10/DDP famil...	[more]
XP_042940042.1	1.19e-53	89.25	mitochondrial import inner membrane translocase subunit Tim9 [Carya illinoinensi...	[more]

BLAST of Cp4.1LG03g02230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IZ98	9.15e-60	100.00	mitochondrial import inner membrane translocase subunit Tim9 OS=Cucurbita maxima...	[more]
A0A6J1F3Y8	9.15e-60	100.00	mitochondrial import inner membrane translocase subunit Tim9 OS=Cucurbita moscha...	[more]
A0A5D3DN53	2.16e-58	96.77	Mitochondrial import inner membrane translocase subunit Tim9 OS=Cucumis melo var...	[more]
A0A0A0LFK3	2.16e-58	96.77	zf-Tim10_DDP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G73424...	[more]
A0A1S3B5G6	2.16e-58	96.77	mitochondrial import inner membrane translocase subunit Tim9 OS=Cucumis melo OX=...	[more]

BLAST of Cp4.1LG03g02230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46560.1	1.1e-38	80.65	Tim10/DDP family zinc finger protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004217	Tim10-like	PFAM	PF02953	zf-Tim10_DDP	coord: 25..84 e-value: 1.4E-19 score: 69.4
IPR035427	Tim10-like domain superfamily	GENE3D	1.10.287.810	Mitochondrial import inner membrane translocase subunit tim13 like domains	coord: 7..91 e-value: 1.1E-24 score: 87.9
IPR035427	Tim10-like domain superfamily	SUPERFAMILY	144122	Tim10-like	coord: 28..89
None	No IPR available	PANTHER	PTHR13172	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM9B	coord: 1..93
None	No IPR available	PANTHER	PTHR13172:SF3	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM9	coord: 1..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g02230.1	Cp4.1LG03g02230.1	mRNA