Cp4.1LG03g02210 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g02210
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RING-type E3 ubiquitin transferase
Location	Cp4.1LG03: 639630 .. 640193 (-)
RNA-Seq Expression	Cp4.1LG03g02210
Synteny	Cp4.1LG03g02210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCCAAATGGACACCAGCGCCGCCCTGATGAATCGATCGACGCCGCCGCACCCGACGACACATCGGACTAACGATTTCTCTCCAATTGAATTCATTCTCGGCCTCATCGCCGTCATCGCCATCCCCGCCCTTGTCTACTCCTTCTTCTTCGCCATCAAGTGCCCGCCAGGTCTCCTCCGCCTCTGGCGCCGGAGATCCGCTAGGCTCTCCGGCGCTCCTGTCACCGTTGTAGCCGGAAATCGTTCTTCTTATAGTGATGTGGCTGTGACGTTTAAGTACAATAAGGACGAGGTTGGTAAGGAAGTCGGCAACGAATGTCCTGTATGCTTGTCGGCGTTCGTTGACGGCGAGGAGATCCGGCAACTCATCGCCTGTAAACACTCTTTTCATGTGGATTGCATCGATATGTGGTTATACTCTCACCCTAATTGCCCGGTTTGTCGCGCGGAGATCGCCATCGCTGTTAAGCGGCCGATTAATAACCGCGCGCCGCGGCGACCGGCGGCTTCTAGAAGCGACGATTTCCATCAAGGACTGCCGGATGCCGGAAATTTAGTTTGA

mRNA sequence

ATGTCCCAAATGGACACCAGCGCCGCCCTGATGAATCGATCGACGCCGCCGCACCCGACGACACATCGGACTAACGATTTCTCTCCAATTGAATTCATTCTCGGCCTCATCGCCGTCATCGCCATCCCCGCCCTTGTCTACTCCTTCTTCTTCGCCATCAAGTGCCCGCCAGGTCTCCTCCGCCTCTGGCGCCGGAGATCCGCTAGGCTCTCCGGCGCTCCTGTCACCGTTGTAGCCGGAAATCGTTCTTCTTATAGTGATGTGGCTGTGACGTTTAAGTACAATAAGGACGAGGTTGGTAAGGAAGTCGGCAACGAATGTCCTGTATGCTTGTCGGCGTTCGTTGACGGCGAGGAGATCCGGCAACTCATCGCCTGTAAACACTCTTTTCATGTGGATTGCATCGATATGTGGTTATACTCTCACCCTAATTGCCCGGTTTGTCGCGCGGAGATCGCCATCGCTGTTAAGCGGCCGATTAATAACCGCGCGCCGCGGCGACCGGCGGCTTCTAGAAGCGACGATTTCCATCAAGGACTGCCGGATGCCGGAAATTTAGTTTGA

Coding sequence (CDS)

ATGTCCCAAATGGACACCAGCGCCGCCCTGATGAATCGATCGACGCCGCCGCACCCGACGACACATCGGACTAACGATTTCTCTCCAATTGAATTCATTCTCGGCCTCATCGCCGTCATCGCCATCCCCGCCCTTGTCTACTCCTTCTTCTTCGCCATCAAGTGCCCGCCAGGTCTCCTCCGCCTCTGGCGCCGGAGATCCGCTAGGCTCTCCGGCGCTCCTGTCACCGTTGTAGCCGGAAATCGTTCTTCTTATAGTGATGTGGCTGTGACGTTTAAGTACAATAAGGACGAGGTTGGTAAGGAAGTCGGCAACGAATGTCCTGTATGCTTGTCGGCGTTCGTTGACGGCGAGGAGATCCGGCAACTCATCGCCTGTAAACACTCTTTTCATGTGGATTGCATCGATATGTGGTTATACTCTCACCCTAATTGCCCGGTTTGTCGCGCGGAGATCGCCATCGCTGTTAAGCGGCCGATTAATAACCGCGCGCCGCGGCGACCGGCGGCTTCTAGAAGCGACGATTTCCATCAAGGACTGCCGGATGCCGGAAATTTAGTTTGA

Protein sequence

MSQMDTSAALMNRSTPPHPTTHRTNDFSPIEFILGLIAVIAIPALVYSFFFAIKCPPGLLRLWRRRSARLSGAPVTVVAGNRSSYSDVAVTFKYNKDEVGKEVGNECPVCLSAFVDGEEIRQLIACKHSFHVDCIDMWLYSHPNCPVCRAEIAIAVKRPINNRAPRRPAASRSDDFHQGLPDAGNLV

Homology

[Close]

BLAST of Cp4.1LG03g02210 vs. ExPASy Swiss-Prot
Match: O80927 (RING-H2 finger protein ATL33 OS=Arabidopsis thaliana OX=3702 GN=ATL33 PE=2 SV=2)

HSP 1 Score: 136.3 bits (342), Expect = 3.4e-31
Identity = 78/190 (41.05%), Postives = 107/190 (56.32%), Query Frame = 0


Query: 16  PPHPTTHRTNDFSPIEFILGLIAVIAIPALVYSFFFAIKCPPGLLRLWRRRSARLS-GAP 75
           PP P   R+ D +P++ I  +IA +A+PALVY+ FF   C          R++  S   P
Sbjct: 48  PPFPAPPRSIDLTPLKLIFVVIAFVAVPALVYALFFNGPCSSSRRNSSSSRTSSSSDDTP 107

Query: 76  VTVVAGNRSSYSDVAVTF----KYNKDEVGKEVGNECPVCLSAFVDGEEIRQLIACKHSF 135
              V  +    ++  VT     K++KD   KE+GNEC VCL  F D +E+RQL  CKH+F
Sbjct: 108 HATV--DTPPITETTVTSESGGKFHKDTHSKEIGNECSVCLMVFTDSDELRQLSECKHAF 167

Query: 136 HVDCIDMWLYSHPNCPVCRAEIAI-----AVKRPIN-----NRA---PRRPAASRSDDFH 188
           HV CI+ WL  HPNCP+CR ++++     A   P+N     NR+    R  A SR DD+ 
Sbjct: 168 HVLCIETWLKDHPNCPICRTDVSVKQQTEAPNVPVNVNGNVNRSGGNRRVSATSRDDDWR 227

[Close]

BLAST of Cp4.1LG03g02210 vs. ExPASy Swiss-Prot
Match: Q9LX93 (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.2e-13
Identity = 39/109 (35.78%), Postives = 58/109 (53.21%), Query Frame = 0


Query: 75  VTVVAGNRSSYSDVAVTFKYNKDEVGKEVGNECPVCLSAFVDGEEIRQLIACKHSFHVDC 134
           +  V  +RS+ + + V   + K E G   G EC VCL+ F + E +R L  C H+FH++C
Sbjct: 105 IPTVGLHRSAINSITVV-GFKKGE-GIIDGTECSVCLNEFEEDESLRLLPKCSHAFHLNC 164

Query: 135 IDMWLYSHPNCPVCRAEIAIAVKRPINNRAPRRPAASRSDDFHQGLPDA 184
           ID WL SH NCP+CRA + +  + P           S S +  +G  D+
Sbjct: 165 IDTWLLSHKNCPLCRAPVLLITEPPHQETETNHQPDSESSNDLRGRQDS 211

[Close]

BLAST of Cp4.1LG03g02210 vs. ExPASy Swiss-Prot
Match: Q8RXX9 (E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2)

HSP 1 Score: 75.9 bits (185), Expect = 5.5e-13
Identity = 58/161 (36.02%), Postives = 75/161 (46.58%), Query Frame = 0


Query: 6   TSAALMNRSTPPHPTTHRTNDFSPIEFILGLIAVIAIPALVYSFFFAI------------ 65
           +SA L    + P PT    N +  +   + +I VI I AL +  FF+I            
Sbjct: 22  SSADLAASQSQPGPTNQPYN-YGRLSPAMAVIVVILIAALFFMGFFSIYFRHCSGVPDAG 81

Query: 66  KCPPGLLRLWRRRSARLSGAPVTVVAGNRS-SYSDVAVTFKYNKDEVGKEVGNECPVCLS 125
             P G  R     +A   G  V+VV    +  YSDV  T K  K E+      EC +CL+
Sbjct: 82  VSPAGGARSRATVNAAARGLDVSVVETFPTFLYSDVK-TQKLGKGEL------ECAICLN 141

Query: 126 AFVDGEEIRQLIACKHSFHVDCIDMWLYSHPNCPVCRAEIA 154
            F D E +R L  C H FH  CID WL +H  CPVCRA +A
Sbjct: 142 EFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANLA 174

[Close]

BLAST of Cp4.1LG03g02210 vs. ExPASy Swiss-Prot
Match: Q9LSW9 (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-12
Identity = 59/175 (33.71%), Postives = 81/175 (46.29%), Query Frame = 0


Query: 16  PPHPTTHRTNDFSPIEFILGLIAVIAIPA----LVYSFFFAIKC--------PPGLLRLW 75
           PP P  HR +  +   F +  +AVI I A    LV  + F IKC          G   L 
Sbjct: 19  PPPPIFHRASS-TGTSFPILAVAVIGILATAFLLVSYYVFVIKCCLNWHRIDILGRFSLS 78

Query: 76  RRRSARLSGAPVTVVAGN-RSSYSDVAV-----TFKYNK-------------DEVGKEVG 135
           RRR  R    P+ V +   RS   D +V      FK+ K             +E  ++  
Sbjct: 79  RRR--RNDQDPLMVYSPELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRS 138

Query: 136 NECPVCLSAFVDGEEIRQLIACKHSFHVDCIDMWLYSHPNCPVCRAEIAIAVKRP 160
            EC VCLS F D E++R +  C H FH+DCID+WL ++ NCP+CR  ++     P
Sbjct: 139 QECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVSCDTSFP 190

[Close]

BLAST of Cp4.1LG03g02210 vs. ExPASy Swiss-Prot
Match: P93823 (RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-12
Identity = 54/162 (33.33%), Postives = 78/162 (48.15%), Query Frame = 0


Query: 16  PPHPTTHRTNDFSP------IEFILGLIAVIAIPA----LVYSFFFAIKCPPG--LLRLW 75
           PP P+T  T+   P        F +  IAVI I A    LV  + F IKC      + ++
Sbjct: 19  PPPPSTTFTSPIFPRTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQIDIF 78

Query: 76  RRRSARLSGAPVTVVA------GNRSSYSDVAVTFKYNKDEV--GKE----VGNECPVCL 135
           RRR       P+ + +      G   S       FK+ K +V  G+E       EC VCL
Sbjct: 79  RRRRRSSDQNPLMIYSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCL 138

Query: 136 SAFVDGEEIRQLIACKHSFHVDCIDMWLYSHPNCPVCRAEIA 154
           + F + E++R +  C H FH+DCID+WL  + NCP+CR  ++
Sbjct: 139 NEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSVS 180

[Close]

BLAST of Cp4.1LG03g02210 vs. NCBI nr
Match: XP_023528143.1 (RING-H2 finger protein ATL33-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 385 bits (990), Expect = 2.98e-135
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MSQMDTSAALMNRSTPPHPTTHRTNDFSPIEFILGLIAVIAIPALVYSFFFAIKCPPGLL 60
           MSQMDTSAALMNRSTPPHPTTHRTNDFSPIEFILGLIAVIAIPALVYSFFFAIKCPPGLL
Sbjct: 1   MSQMDTSAALMNRSTPPHPTTHRTNDFSPIEFILGLIAVIAIPALVYSFFFAIKCPPGLL 60

Query: 61  RLWRRRSARLSGAPVTVVAGNRSSYSDVAVTFKYNKDEVGKEVGNECPVCLSAFVDGEEI 120
           RLWRRRSARLSGAPVTVVAGNRSSYSDVAVTFKYNKDEVGKEVGNECPVCLSAFVDGEEI
Sbjct: 61  RLWRRRSARLSGAPVTVVAGNRSSYSDVAVTFKYNKDEVGKEVGNECPVCLSAFVDGEEI 120

Query: 121 RQLIACKHSFHVDCIDMWLYSHPNCPVCRAEIAIAVKRPINNRAPRRPAASRSDDFHQGL 180
           RQLIACKHSFHVDCIDMWLYSHPNCPVCRAEIAIAVKRPINNRAPRRPAASRSDDFHQGL
Sbjct: 121 RQLIACKHSFHVDCIDMWLYSHPNCPVCRAEIAIAVKRPINNRAPRRPAASRSDDFHQGL 180

Query: 181 PDAGNLV 187
           PDAGNLV
Sbjct: 181 PDAGNLV 187

[Close]

BLAST of Cp4.1LG03g02210 vs. NCBI nr
Match: XP_022934546.1 (RING-H2 finger protein ATL33-like [Cucurbita moschata] >KAG6580552.1 RING-H2 finger protein ATL33, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017306.1 RING-H2 finger protein ATL33, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 382 bits (980), Expect = 9.98e-134
Identity = 185/187 (98.93%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MSQMDTSAALMNRSTPPHPTTHRTNDFSPIEFILGLIAVIAIPALVYSFFFAIKCPPGLL 60
           MSQMDTSAALMNRSTPPHPT HRTNDFSPIEFILGLIAVIAIPALVYSFFFAIKCPPGLL
Sbjct: 1   MSQMDTSAALMNRSTPPHPTPHRTNDFSPIEFILGLIAVIAIPALVYSFFFAIKCPPGLL 60

Query: 61  RLWRRRSARLSGAPVTVVAGNRSSYSDVAVTFKYNKDEVGKEVGNECPVCLSAFVDGEEI 120
           RLWRRRSARLSGAPVTVVAGNRSSYSDVAVTFKYNKDEVGKEVGNECPVCLSAFVDGEEI
Sbjct: 61  RLWRRRSARLSGAPVTVVAGNRSSYSDVAVTFKYNKDEVGKEVGNECPVCLSAFVDGEEI 120

Query: 121 RQLIACKHSFHVDCIDMWLYSHPNCPVCRAEIAIAVKRPINNRAPRRPAASRSDDFHQGL 180
           RQLIACKHSFHVDCIDMW YSHPNCPVCRAEIAIAVKRPINNRAPRRPAASRSDDFHQGL
Sbjct: 121 RQLIACKHSFHVDCIDMWFYSHPNCPVCRAEIAIAVKRPINNRAPRRPAASRSDDFHQGL 180

Query: 181 PDAGNLV 187
           PDAGNLV
Sbjct: 181 PDAGNLV 187

[Close]

BLAST of Cp4.1LG03g02210 vs. NCBI nr
Match: XP_022983254.1 (RING-H2 finger protein ATL33-like [Cucurbita maxima])

HSP 1 Score: 373 bits (958), Expect = 2.26e-130
Identity = 179/187 (95.72%), Postives = 181/187 (96.79%), Query Frame = 0


Query: 1   MSQMDTSAALMNRSTPPHPTTHRTNDFSPIEFILGLIAVIAIPALVYSFFFAIKCPPGLL 60
           MSQMD+SAALMNRSTPPHP THRTNDFSP EFILGL+AVIAIPALVYSFFFAIKCPPGLL
Sbjct: 1   MSQMDSSAALMNRSTPPHPMTHRTNDFSPFEFILGLVAVIAIPALVYSFFFAIKCPPGLL 60

Query: 61  RLWRRRSARLSGAPVTVVAGNRSSYSDVAVTFKYNKDEVGKEVGNECPVCLSAFVDGEEI 120
           RLWRRRSARLSGAPV VVAGNRSSYSDVA TFKYNKDEVGKEVGNECPVCLSAFVDGEEI
Sbjct: 61  RLWRRRSARLSGAPVAVVAGNRSSYSDVAATFKYNKDEVGKEVGNECPVCLSAFVDGEEI 120

Query: 121 RQLIACKHSFHVDCIDMWLYSHPNCPVCRAEIAIAVKRPINNRAPRRPAASRSDDFHQGL 180
           RQLIACKHSFHVDCIDMW YSHPNCPVCRAEI IAVKRPINNRAPRRPAASRSDDFHQGL
Sbjct: 121 RQLIACKHSFHVDCIDMWFYSHPNCPVCRAEIVIAVKRPINNRAPRRPAASRSDDFHQGL 180

Query: 181 PDAGNLV 187
           PDAGNLV
Sbjct: 181 PDAGNLV 187

[Close]

BLAST of Cp4.1LG03g02210 vs. NCBI nr
Match: XP_038905078.1 (RING-H2 finger protein ATL33 [Benincasa hispida])

HSP 1 Score: 311 bits (796), Expect = 1.01e-105
Identity = 152/184 (82.61%), Postives = 157/184 (85.33%), Query Frame = 0


Query: 4   MDTSAALMNRSTPPHPTTHRTNDFSPIEFILGLIAVIAIPALVYSFFFAIKCPPGLLRLW 63
           MD SA+LMNRS PP PT HRT DFSPIEFILGL+AVI IPALVYSFFFAIKCPP LLRLW
Sbjct: 1   MDKSASLMNRSPPPSPTPHRTVDFSPIEFILGLVAVITIPALVYSFFFAIKCPPNLLRLW 60

Query: 64  RRRSARLSGAPVTVVAGNRSSYSDVAVTFKYNKDEVGKEVGNECPVCLSAFVDGEEIRQL 123
           R RSARLSGA VTVV  NR+  SDVA   KYNKDE  KEV NECPVCLSAF DGEEIRQL
Sbjct: 61  RHRSARLSGAAVTVVVRNRTPSSDVAAAVKYNKDEHCKEVSNECPVCLSAFDDGEEIRQL 120

Query: 124 IACKHSFHVDCIDMWLYSHPNCPVCRAEIAIAVKRPINNRAPRRPAASRSDDFHQGLPDA 183
            ACKHSFHVDCIDMWLYSHPNCPVCRA + +AVKRPINN APRRPA SRSDDF QGLPDA
Sbjct: 121 AACKHSFHVDCIDMWLYSHPNCPVCRAAVPVAVKRPINNHAPRRPAVSRSDDFQQGLPDA 180

Query: 184 GNLV 187
           G LV
Sbjct: 181 GYLV 184

[Close]

BLAST of Cp4.1LG03g02210 vs. NCBI nr
Match: XP_004137943.1 (RING-H2 finger protein ATL33 [Cucumis sativus])

HSP 1 Score: 307 bits (786), Expect = 3.38e-104
Identity = 147/184 (79.89%), Postives = 156/184 (84.78%), Query Frame = 0


Query: 4   MDTSAALMNRSTPPHPTTHRTNDFSPIEFILGLIAVIAIPALVYSFFFAIKCPPGLLRLW 63
           MD +A+ MNRS PP+PT HRT DFSPIEFILGL+AVI IPALVYSF FAIKCPP  LRLW
Sbjct: 1   MDATASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALVYSFIFAIKCPPNFLRLW 60

Query: 64  RRRSARLSGAPVTVVAGNRSSYSDVAVTFKYNKDEVGKEVGNECPVCLSAFVDGEEIRQL 123
           R+RS RLSGA  TVV GNR+  SDVA   KYNKDE  KEVGNECPVCLSAF DGEEIRQL
Sbjct: 61  RQRSTRLSGAGATVVVGNRTPSSDVAAAVKYNKDEHCKEVGNECPVCLSAFDDGEEIRQL 120

Query: 124 IACKHSFHVDCIDMWLYSHPNCPVCRAEIAIAVKRPINNRAPRRPAASRSDDFHQGLPDA 183
             CKHSFHVDCIDMWLYSHPNCPVCRA + + VKRPI+N APRRPAASRSDDFHQGLPDA
Sbjct: 121 AVCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPIHNHAPRRPAASRSDDFHQGLPDA 180

Query: 184 GNLV 187
           G LV
Sbjct: 181 GYLV 184

[Close]

BLAST of Cp4.1LG03g02210 vs. ExPASy TrEMBL
Match: A0A6J1F238 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111441690 PE=3 SV=1)

HSP 1 Score: 382 bits (980), Expect = 4.83e-134
Identity = 185/187 (98.93%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MSQMDTSAALMNRSTPPHPTTHRTNDFSPIEFILGLIAVIAIPALVYSFFFAIKCPPGLL 60
           MSQMDTSAALMNRSTPPHPT HRTNDFSPIEFILGLIAVIAIPALVYSFFFAIKCPPGLL
Sbjct: 1   MSQMDTSAALMNRSTPPHPTPHRTNDFSPIEFILGLIAVIAIPALVYSFFFAIKCPPGLL 60

Query: 61  RLWRRRSARLSGAPVTVVAGNRSSYSDVAVTFKYNKDEVGKEVGNECPVCLSAFVDGEEI 120
           RLWRRRSARLSGAPVTVVAGNRSSYSDVAVTFKYNKDEVGKEVGNECPVCLSAFVDGEEI
Sbjct: 61  RLWRRRSARLSGAPVTVVAGNRSSYSDVAVTFKYNKDEVGKEVGNECPVCLSAFVDGEEI 120

Query: 121 RQLIACKHSFHVDCIDMWLYSHPNCPVCRAEIAIAVKRPINNRAPRRPAASRSDDFHQGL 180
           RQLIACKHSFHVDCIDMW YSHPNCPVCRAEIAIAVKRPINNRAPRRPAASRSDDFHQGL
Sbjct: 121 RQLIACKHSFHVDCIDMWFYSHPNCPVCRAEIAIAVKRPINNRAPRRPAASRSDDFHQGL 180

Query: 181 PDAGNLV 187
           PDAGNLV
Sbjct: 181 PDAGNLV 187

[Close]

BLAST of Cp4.1LG03g02210 vs. ExPASy TrEMBL
Match: A0A6J1J6T6 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111481888 PE=3 SV=1)

HSP 1 Score: 373 bits (958), Expect = 1.09e-130
Identity = 179/187 (95.72%), Postives = 181/187 (96.79%), Query Frame = 0


Query: 1   MSQMDTSAALMNRSTPPHPTTHRTNDFSPIEFILGLIAVIAIPALVYSFFFAIKCPPGLL 60
           MSQMD+SAALMNRSTPPHP THRTNDFSP EFILGL+AVIAIPALVYSFFFAIKCPPGLL
Sbjct: 1   MSQMDSSAALMNRSTPPHPMTHRTNDFSPFEFILGLVAVIAIPALVYSFFFAIKCPPGLL 60

Query: 61  RLWRRRSARLSGAPVTVVAGNRSSYSDVAVTFKYNKDEVGKEVGNECPVCLSAFVDGEEI 120
           RLWRRRSARLSGAPV VVAGNRSSYSDVA TFKYNKDEVGKEVGNECPVCLSAFVDGEEI
Sbjct: 61  RLWRRRSARLSGAPVAVVAGNRSSYSDVAATFKYNKDEVGKEVGNECPVCLSAFVDGEEI 120

Query: 121 RQLIACKHSFHVDCIDMWLYSHPNCPVCRAEIAIAVKRPINNRAPRRPAASRSDDFHQGL 180
           RQLIACKHSFHVDCIDMW YSHPNCPVCRAEI IAVKRPINNRAPRRPAASRSDDFHQGL
Sbjct: 121 RQLIACKHSFHVDCIDMWFYSHPNCPVCRAEIVIAVKRPINNRAPRRPAASRSDDFHQGL 180

Query: 181 PDAGNLV 187
           PDAGNLV
Sbjct: 181 PDAGNLV 187

[Close]

BLAST of Cp4.1LG03g02210 vs. ExPASy TrEMBL
Match: A0A0A0LA67 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_3G734330 PE=3 SV=1)

HSP 1 Score: 307 bits (786), Expect = 1.64e-104
Identity = 147/184 (79.89%), Postives = 156/184 (84.78%), Query Frame = 0


Query: 4   MDTSAALMNRSTPPHPTTHRTNDFSPIEFILGLIAVIAIPALVYSFFFAIKCPPGLLRLW 63
           MD +A+ MNRS PP+PT HRT DFSPIEFILGL+AVI IPALVYSF FAIKCPP  LRLW
Sbjct: 1   MDATASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALVYSFIFAIKCPPNFLRLW 60

Query: 64  RRRSARLSGAPVTVVAGNRSSYSDVAVTFKYNKDEVGKEVGNECPVCLSAFVDGEEIRQL 123
           R+RS RLSGA  TVV GNR+  SDVA   KYNKDE  KEVGNECPVCLSAF DGEEIRQL
Sbjct: 61  RQRSTRLSGAGATVVVGNRTPSSDVAAAVKYNKDEHCKEVGNECPVCLSAFDDGEEIRQL 120

Query: 124 IACKHSFHVDCIDMWLYSHPNCPVCRAEIAIAVKRPINNRAPRRPAASRSDDFHQGLPDA 183
             CKHSFHVDCIDMWLYSHPNCPVCRA + + VKRPI+N APRRPAASRSDDFHQGLPDA
Sbjct: 121 AVCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPIHNHAPRRPAASRSDDFHQGLPDA 180

Query: 184 GNLV 187
           G LV
Sbjct: 181 GYLV 184

[Close]

BLAST of Cp4.1LG03g02210 vs. ExPASy TrEMBL
Match: A0A5D3DN65 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001760 PE=3 SV=1)

HSP 1 Score: 305 bits (781), Expect = 9.46e-104
Identity = 146/184 (79.35%), Postives = 155/184 (84.24%), Query Frame = 0


Query: 4   MDTSAALMNRSTPPHPTTHRTNDFSPIEFILGLIAVIAIPALVYSFFFAIKCPPGLLRLW 63
           MDT+A+ MNRS PP+PT HRT DFSPIEFILGL+AVI IPAL YSF FAIKCPP  LRLW
Sbjct: 1   MDTTASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALAYSFIFAIKCPPNFLRLW 60

Query: 64  RRRSARLSGAPVTVVAGNRSSYSDVAVTFKYNKDEVGKEVGNECPVCLSAFVDGEEIRQL 123
           R+RS RLS A VT+V GNR+  SDVA   KYNKDE  KEVG ECPVCLSAF DGEEIRQL
Sbjct: 61  RQRSTRLSAAGVTMVVGNRTPSSDVAAAVKYNKDEHCKEVGTECPVCLSAFDDGEEIRQL 120

Query: 124 IACKHSFHVDCIDMWLYSHPNCPVCRAEIAIAVKRPINNRAPRRPAASRSDDFHQGLPDA 183
             CKHSFHVDCIDMWLYSHPNCPVCRA + + VKRPINN APRRPAASRSDDFHQGLPDA
Sbjct: 121 TTCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPINNHAPRRPAASRSDDFHQGLPDA 180

Query: 184 GNLV 187
           G LV
Sbjct: 181 GYLV 184

[Close]

BLAST of Cp4.1LG03g02210 vs. ExPASy TrEMBL
Match: A0A1S3B6Q9 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103486397 PE=3 SV=1)

HSP 1 Score: 305 bits (781), Expect = 9.46e-104
Identity = 146/184 (79.35%), Postives = 155/184 (84.24%), Query Frame = 0


Query: 4   MDTSAALMNRSTPPHPTTHRTNDFSPIEFILGLIAVIAIPALVYSFFFAIKCPPGLLRLW 63
           MDT+A+ MNRS PP+PT HRT DFSPIEFILGL+AVI IPAL YSF FAIKCPP  LRLW
Sbjct: 1   MDTTASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALAYSFIFAIKCPPNFLRLW 60

Query: 64  RRRSARLSGAPVTVVAGNRSSYSDVAVTFKYNKDEVGKEVGNECPVCLSAFVDGEEIRQL 123
           R+RS RLS A VT+V GNR+  SDVA   KYNKDE  KEVG ECPVCLSAF DGEEIRQL
Sbjct: 61  RQRSTRLSAAGVTMVVGNRTPSSDVAAAVKYNKDEHCKEVGTECPVCLSAFDDGEEIRQL 120

Query: 124 IACKHSFHVDCIDMWLYSHPNCPVCRAEIAIAVKRPINNRAPRRPAASRSDDFHQGLPDA 183
             CKHSFHVDCIDMWLYSHPNCPVCRA + + VKRPINN APRRPAASRSDDFHQGLPDA
Sbjct: 121 TTCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPINNHAPRRPAASRSDDFHQGLPDA 180

Query: 184 GNLV 187
           G LV
Sbjct: 181 GYLV 184

[Close]

BLAST of Cp4.1LG03g02210 vs. TAIR 10
Match: AT2G37580.1 (RING/U-box superfamily protein )

HSP 1 Score: 136.3 bits (342), Expect = 2.4e-32
Identity = 78/190 (41.05%), Postives = 107/190 (56.32%), Query Frame = 0


Query: 16  PPHPTTHRTNDFSPIEFILGLIAVIAIPALVYSFFFAIKCPPGLLRLWRRRSARLS-GAP 75
           PP P   R+ D +P++ I  +IA +A+PALVY+ FF   C          R++  S   P
Sbjct: 48  PPFPAPPRSIDLTPLKLIFVVIAFVAVPALVYALFFNGPCSSSRRNSSSSRTSSSSDDTP 107

Query: 76  VTVVAGNRSSYSDVAVTF----KYNKDEVGKEVGNECPVCLSAFVDGEEIRQLIACKHSF 135
              V  +    ++  VT     K++KD   KE+GNEC VCL  F D +E+RQL  CKH+F
Sbjct: 108 HATV--DTPPITETTVTSESGGKFHKDTHSKEIGNECSVCLMVFTDSDELRQLSECKHAF 167

Query: 136 HVDCIDMWLYSHPNCPVCRAEIAI-----AVKRPIN-----NRA---PRRPAASRSDDFH 188
           HV CI+ WL  HPNCP+CR ++++     A   P+N     NR+    R  A SR DD+ 
Sbjct: 168 HVLCIETWLKDHPNCPICRTDVSVKQQTEAPNVPVNVNGNVNRSGGNRRVSATSRDDDWR 227

[Close]

BLAST of Cp4.1LG03g02210 vs. TAIR 10
Match: AT5G10380.1 (RING/U-box superfamily protein )

HSP 1 Score: 76.6 bits (187), Expect = 2.3e-14
Identity = 39/109 (35.78%), Postives = 58/109 (53.21%), Query Frame = 0


Query: 75  VTVVAGNRSSYSDVAVTFKYNKDEVGKEVGNECPVCLSAFVDGEEIRQLIACKHSFHVDC 134
           +  V  +RS+ + + V   + K E G   G EC VCL+ F + E +R L  C H+FH++C
Sbjct: 105 IPTVGLHRSAINSITVV-GFKKGE-GIIDGTECSVCLNEFEEDESLRLLPKCSHAFHLNC 164

Query: 135 IDMWLYSHPNCPVCRAEIAIAVKRPINNRAPRRPAASRSDDFHQGLPDA 184
           ID WL SH NCP+CRA + +  + P           S S +  +G  D+
Sbjct: 165 IDTWLLSHKNCPLCRAPVLLITEPPHQETETNHQPDSESSNDLRGRQDS 211

[Close]

BLAST of Cp4.1LG03g02210 vs. TAIR 10
Match: AT3G05200.1 (RING/U-box superfamily protein )

HSP 1 Score: 75.9 bits (185), Expect = 3.9e-14
Identity = 58/161 (36.02%), Postives = 75/161 (46.58%), Query Frame = 0


Query: 6   TSAALMNRSTPPHPTTHRTNDFSPIEFILGLIAVIAIPALVYSFFFAI------------ 65
           +SA L    + P PT    N +  +   + +I VI I AL +  FF+I            
Sbjct: 22  SSADLAASQSQPGPTNQPYN-YGRLSPAMAVIVVILIAALFFMGFFSIYFRHCSGVPDAG 81

Query: 66  KCPPGLLRLWRRRSARLSGAPVTVVAGNRS-SYSDVAVTFKYNKDEVGKEVGNECPVCLS 125
             P G  R     +A   G  V+VV    +  YSDV  T K  K E+      EC +CL+
Sbjct: 82  VSPAGGARSRATVNAAARGLDVSVVETFPTFLYSDVK-TQKLGKGEL------ECAICLN 141

Query: 126 AFVDGEEIRQLIACKHSFHVDCIDMWLYSHPNCPVCRAEIA 154
            F D E +R L  C H FH  CID WL +H  CPVCRA +A
Sbjct: 142 EFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANLA 174

[Close]

BLAST of Cp4.1LG03g02210 vs. TAIR 10
Match: AT1G04360.1 (RING/U-box superfamily protein )

HSP 1 Score: 74.7 bits (182), Expect = 8.7e-14
Identity = 54/162 (33.33%), Postives = 78/162 (48.15%), Query Frame = 0


Query: 16  PPHPTTHRTNDFSP------IEFILGLIAVIAIPA----LVYSFFFAIKCPPG--LLRLW 75
           PP P+T  T+   P        F +  IAVI I A    LV  + F IKC      + ++
Sbjct: 19  PPPPSTTFTSPIFPRTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQIDIF 78

Query: 76  RRRSARLSGAPVTVVA------GNRSSYSDVAVTFKYNKDEV--GKE----VGNECPVCL 135
           RRR       P+ + +      G   S       FK+ K +V  G+E       EC VCL
Sbjct: 79  RRRRRSSDQNPLMIYSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCL 138

Query: 136 SAFVDGEEIRQLIACKHSFHVDCIDMWLYSHPNCPVCRAEIA 154
           + F + E++R +  C H FH+DCID+WL  + NCP+CR  ++
Sbjct: 139 NEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSVS 180

[Close]

BLAST of Cp4.1LG03g02210 vs. TAIR 10
Match: AT4G17905.1 (RING/U-box superfamily protein )

HSP 1 Score: 74.7 bits (182), Expect = 8.7e-14
Identity = 38/98 (38.78%), Postives = 52/98 (53.06%), Query Frame = 0


Query: 92  FKYNKDEVGKEV-GNECPVCLSAFVDGEEIRQLIACKHSFHVDCIDMWLYSHPNCPVCRA 151
           FK  K + G ++ G +C +CL  F + E +R L  C H+FHV CID WL SH NCP+CRA
Sbjct: 139 FKLKKHQNGFKINGTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRA 198

Query: 152 EIAIAVKRPINNRAPRRPAASRSDDFHQGLPDA-GNLV 188
           +I +    P   +          D F   +  A GN+V
Sbjct: 199 KIIV----PTTQQPEHHVVVMNLDRFTSNVGSAEGNVV 232

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g02210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80927	3.4e-31	41.05	RING-H2 finger protein ATL33 OS=Arabidopsis thaliana OX=3702 GN=ATL33 PE=2 SV=2	[more]
Q9LX93	3.2e-13	35.78	E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 ...	[more]
Q8RXX9	5.5e-13	36.02	E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV...	[more]
Q9LSW9	1.2e-12	33.71	RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1	[more]
P93823	1.2e-12	33.33	RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1	[more]

BLAST of Cp4.1LG03g02210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023528143.1	2.98e-135	100.00	RING-H2 finger protein ATL33-like [Cucurbita pepo subsp. pepo]	[more]
XP_022934546.1	9.98e-134	98.93	RING-H2 finger protein ATL33-like [Cucurbita moschata] >KAG6580552.1 RING-H2 fin...	[more]
XP_022983254.1	2.26e-130	95.72	RING-H2 finger protein ATL33-like [Cucurbita maxima]	[more]
XP_038905078.1	1.01e-105	82.61	RING-H2 finger protein ATL33 [Benincasa hispida]	[more]
XP_004137943.1	3.38e-104	79.89	RING-H2 finger protein ATL33 [Cucumis sativus]	[more]

BLAST of Cp4.1LG03g02210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F238	4.83e-134	98.93	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111441690...	[more]
A0A6J1J6T6	1.09e-130	95.72	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111481888 P...	[more]
A0A0A0LA67	1.64e-104	79.89	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_3G734330 PE...	[more]
A0A5D3DN65	9.46e-104	79.35	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3B6Q9	9.46e-104	79.35	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103486397 PE=3 ...	[more]

BLAST of Cp4.1LG03g02210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37580.1	2.4e-32	41.05	RING/U-box superfamily protein	[more]
AT5G10380.1	2.3e-14	35.78	RING/U-box superfamily protein	[more]
AT3G05200.1	3.9e-14	36.02	RING/U-box superfamily protein	[more]
AT1G04360.1	8.7e-14	33.33	RING/U-box superfamily protein	[more]
AT4G17905.1	8.7e-14	38.78	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 107..148 e-value: 4.7E-5 score: 32.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 105..149 e-value: 1.5E-13 score: 50.8
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 107..149 score: 12.267982
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 78..154 e-value: 2.7E-20 score: 73.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..187
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR45676:SF88	RING-H2 FINGER PROTEIN ATL33	coord: 11..187
None	No IPR available	CDD	cd16461	RING-H2_EL5_like	coord: 106..149 e-value: 4.01775E-17 score: 69.2611
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 106..155
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 11..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g02210.1	Cp4.1LG03g02210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane