Cp4.1LG03g02200 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g02200
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Histone H2B
Location	Cp4.1LG03: 679595 .. 680014 (-)
RNA-Seq Expression	Cp4.1LG03g02200
Synteny	Cp4.1LG03g02200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCAACCAAAGCAGAAAAGAAGCCCGCAGAGAAAAAACCAGCCGAGAAGACCCCAGCTTCGTCGGAGAAGAAGCTTAAGGCCGAGAAGAAGATCGCTAAAGACGGCGGCGATAAGAAGAAGAAGAAGGTCAAAAAGAGCACCGAGACTTACAAGATCTATATCTTCAAGGTCTTGAAACAGGTTCATCCTGACATTGGGATCTCCAGCAAGGCCATGGGCATTATGAACAGTTTCATCAACGATATCTTTGAAAAACTTGCTCAAGAGGCTTCCAAGTTAGCGAGATATAACAAGAAGCCTACGATCACCTCACGCGAGATCCAGACCGCCGTTCGATTGGTGTTGCCTGGCGAGTTAGCGAAGCATGCCGTATCTGAGGGAACTAAGGCCGTAACCAAATTTACGAGCTCTTAG

mRNA sequence

ATGGCGCCAACCAAAGCAGAAAAGAAGCCCGCAGAGAAAAAACCAGCCGAGAAGACCCCAGCTTCGTCGGAGAAGAAGCTTAAGGCCGAGAAGAAGATCGCTAAAGACGGCGGCGATAAGAAGAAGAAGAAGGTCAAAAAGAGCACCGAGACTTACAAGATCTATATCTTCAAGGTCTTGAAACAGGTTCATCCTGACATTGGGATCTCCAGCAAGGCCATGGGCATTATGAACAGTTTCATCAACGATATCTTTGAAAAACTTGCTCAAGAGGCTTCCAAGTTAGCGAGATATAACAAGAAGCCTACGATCACCTCACGCGAGATCCAGACCGCCGTTCGATTGGTGTTGCCTGGCGAGTTAGCGAAGCATGCCGTATCTGAGGGAACTAAGGCCGTAACCAAATTTACGAGCTCTTAG

Coding sequence (CDS)

ATGGCGCCAACCAAAGCAGAAAAGAAGCCCGCAGAGAAAAAACCAGCCGAGAAGACCCCAGCTTCGTCGGAGAAGAAGCTTAAGGCCGAGAAGAAGATCGCTAAAGACGGCGGCGATAAGAAGAAGAAGAAGGTCAAAAAGAGCACCGAGACTTACAAGATCTATATCTTCAAGGTCTTGAAACAGGTTCATCCTGACATTGGGATCTCCAGCAAGGCCATGGGCATTATGAACAGTTTCATCAACGATATCTTTGAAAAACTTGCTCAAGAGGCTTCCAAGTTAGCGAGATATAACAAGAAGCCTACGATCACCTCACGCGAGATCCAGACCGCCGTTCGATTGGTGTTGCCTGGCGAGTTAGCGAAGCATGCCGTATCTGAGGGAACTAAGGCCGTAACCAAATTTACGAGCTCTTAG

Protein sequence

MAPTKAEKKPAEKKPAEKTPASSEKKLKAEKKIAKDGGDKKKKKVKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

Homology

[Close]

BLAST of Cp4.1LG03g02200 vs. ExPASy Swiss-Prot
Match: Q1SU99 (Probable histone H2B.3 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 219.5 bits (558), Expect = 2.3e-56
Identity = 125/140 (89.29%), Postives = 131/140 (93.57%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPAEKTPASSEKKLKAEKKIAKDG-GDKKKKKVKKSTETYKIYIFKV 60
           M PTKAEKKPAEKKPAEK PA  EKK KAEKKI+K+G  DKKKK+ KKS ETYKIYIFKV
Sbjct: 1   MPPTKAEKKPAEKKPAEKAPA--EKKPKAEKKISKEGSSDKKKKRTKKSVETYKIYIFKV 60

Query: 61  LKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPG 120
           LKQVHPDIG+SSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTAVRLVLPG
Sbjct: 61  LKQVHPDIGVSSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 120

Query: 121 ELAKHAVSEGTKAVTKFTSS 140
           ELAKHAVSEGTKAVTKFTSS
Sbjct: 121 ELAKHAVSEGTKAVTKFTSS 138

[Close]

BLAST of Cp4.1LG03g02200 vs. ExPASy Swiss-Prot
Match: Q9ZUS0 (Histone H2B.4 OS=Arabidopsis thaliana OX=3702 GN=At2g37470 PE=1 SV=3)

HSP 1 Score: 209.9 bits (533), Expect = 1.8e-53
Identity = 122/140 (87.14%), Postives = 126/140 (90.00%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPAEKTPASSEKKLKAEKKIAKD--GGDKKKKKVKKSTETYKIYIFK 60
           MAP  AEKKPAEKKPA K PA  EK  KAEKKI+KD  G +KKKKK KKS ETYKIYIFK
Sbjct: 1   MAPKAAEKKPAEKKPAGKAPA--EKLPKAEKKISKDAGGSEKKKKKSKKSVETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPD+GIS KAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDVGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTS 139
           GELAKHAVSEGTKAVTKFTS
Sbjct: 121 GELAKHAVSEGTKAVTKFTS 138

[Close]

BLAST of Cp4.1LG03g02200 vs. ExPASy Swiss-Prot
Match: Q9LFF6 (Histone H2B.8 OS=Arabidopsis thaliana OX=3702 GN=At3g53650 PE=1 SV=3)

HSP 1 Score: 208.4 bits (529), Expect = 5.3e-53
Identity = 121/140 (86.43%), Postives = 127/140 (90.71%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPAEKTPASSEKKLKAEKKIAKDGG-DKKKKKVKKSTETYKIYIFKV 60
           MAP  AEKKPA KKPAEK PA  EK  KAEKKI K+GG +KKKKK KK+ ETYKIYIFKV
Sbjct: 1   MAPKAAEKKPAGKKPAEKAPA--EKLPKAEKKITKEGGSEKKKKKSKKNIETYKIYIFKV 60

Query: 61  LKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPG 120
           LKQVHPDIGIS KAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTAVRLVLPG
Sbjct: 61  LKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 120

Query: 121 ELAKHAVSEGTKAVTKFTSS 140
           EL+KHAVSEGTKAVTKFTSS
Sbjct: 121 ELSKHAVSEGTKAVTKFTSS 138

[Close]

BLAST of Cp4.1LG03g02200 vs. ExPASy Swiss-Prot
Match: O22582 (Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3)

HSP 1 Score: 208.4 bits (529), Expect = 5.3e-53
Identity = 125/148 (84.46%), Postives = 131/148 (88.51%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPAEK-----TPASSEKKLKAEKKIAKDG----GDKKKKKVKKSTET 60
           MAP KAEKKPAEKKPAE+       A +EKK KA KK+ K+G    GDKKKK+VKKS ET
Sbjct: 1   MAP-KAEKKPAEKKPAEEKKAVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRVKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEAS+LARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 140
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of Cp4.1LG03g02200 vs. ExPASy Swiss-Prot
Match: Q9SI96 (Histone H2B.3 OS=Arabidopsis thaliana OX=3702 GN=At2g28720 PE=1 SV=3)

HSP 1 Score: 207.6 bits (527), Expect = 9.0e-53
Identity = 126/152 (82.89%), Postives = 131/152 (86.18%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPAEKTPAS---------SEKKLKAEKKIAKD----GGDKKKKKVKK 60
           MAP KA KKPAEKKPAEK PA          +EKK KA KK+ K+    G +KKKK+VKK
Sbjct: 1   MAP-KAGKKPAEKKPAEKAPAEEEKVAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKK 60

Query: 61  STETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSR 120
           STETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSR
Sbjct: 61  STETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 140
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

[Close]

BLAST of Cp4.1LG03g02200 vs. NCBI nr
Match: XP_022935032.1 (probable histone H2B.3 [Cucurbita moschata] >XP_022982546.1 probable histone H2B.3 [Cucurbita maxima] >XP_023527987.1 probable histone H2B.3 [Cucurbita pepo subsp. pepo] >KAG6580565.1 Histone H2B.4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017318.1 Histone H2B.4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 251 bits (641), Expect = 1.32e-83
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPAEKTPASSEKKLKAEKKIAKDGGDKKKKKVKKSTETYKIYIFKVL 60
           MAPTKAEKKPAEKKPAEKTPASSEKKLKAEKKIAKDGGDKKKKKVKKSTETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKTPASSEKKLKAEKKIAKDGGDKKKKKVKKSTETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 139
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Cp4.1LG03g02200 vs. NCBI nr
Match: XP_038903506.1 (probable histone H2B.3 [Benincasa hispida])

HSP 1 Score: 244 bits (622), Expect = 1.04e-80
Identity = 134/139 (96.40%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPAEKTPASSEKKLKAEKKIAKDGGDKKKKKVKKSTETYKIYIFKVL 60
           MAPTKAEKKPAEKKPAEK P+S+EKK KAEKKIAKDGGDKKKKK+KKSTETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKAPSSAEKKPKAEKKIAKDGGDKKKKKIKKSTETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 139
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Cp4.1LG03g02200 vs. NCBI nr
Match: XP_008442575.1 (PREDICTED: probable histone H2B.3 [Cucumis melo] >KAA0044072.1 histone H2B-like [Cucumis melo var. makuwa] >TYK25065.1 histone H2B-like [Cucumis melo var. makuwa])

HSP 1 Score: 243 bits (621), Expect = 1.48e-80
Identity = 134/139 (96.40%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPAEKTPASSEKKLKAEKKIAKDGGDKKKKKVKKSTETYKIYIFKVL 60
           MAPTKAEKKPAEKKPAEKTP+S+EKK KAEKKIAKD GDKKKKK+KKSTETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKTPSSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 139
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Cp4.1LG03g02200 vs. NCBI nr
Match: XP_022958236.1 (probable histone H2B.3 [Cucurbita moschata] >XP_023005892.1 probable histone H2B.3 [Cucurbita maxima] >XP_023538865.1 probable histone H2B.3 [Cucurbita pepo subsp. pepo] >KAG6596423.1 Histone H2B.4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027965.1 Histone H2B.4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 242 bits (617), Expect = 6.04e-80
Identity = 133/139 (95.68%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPAEKTPASSEKKLKAEKKIAKDGGDKKKKKVKKSTETYKIYIFKVL 60
           MAPTKAEKKPAEKKPAEKTP S+EKK KAEKKIAKD GDKKKKK+KKSTETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKTPTSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 139
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Cp4.1LG03g02200 vs. NCBI nr
Match: XP_004137790.1 (probable histone H2B.3 [Cucumis sativus] >KGN58892.1 hypothetical protein Csa_002030 [Cucumis sativus])

HSP 1 Score: 237 bits (604), Expect = 5.60e-78
Identity = 133/139 (95.68%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPAEKTPASSEKKLKAEKKIAKDGGDKKKKKVKKSTETYKIYIFKVL 60
           MAPTKAEKKPAEKKPAEKTP+S+EKK KAEKKI KDGGDKKKK VKKS ETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKTPSSAEKKPKAEKKIVKDGGDKKKK-VKKSNETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 139
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 138

[Close]

BLAST of Cp4.1LG03g02200 vs. ExPASy TrEMBL
Match: A0A6J1IZM1 (Histone H2B OS=Cucurbita maxima OX=3661 GN=LOC111481391 PE=3 SV=1)

HSP 1 Score: 251 bits (641), Expect = 6.40e-84
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPAEKTPASSEKKLKAEKKIAKDGGDKKKKKVKKSTETYKIYIFKVL 60
           MAPTKAEKKPAEKKPAEKTPASSEKKLKAEKKIAKDGGDKKKKKVKKSTETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKTPASSEKKLKAEKKIAKDGGDKKKKKVKKSTETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 139
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Cp4.1LG03g02200 vs. ExPASy TrEMBL
Match: A0A6J1F4F8 (Histone H2B OS=Cucurbita moschata OX=3662 GN=LOC111442021 PE=3 SV=1)

HSP 1 Score: 251 bits (641), Expect = 6.40e-84
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPAEKTPASSEKKLKAEKKIAKDGGDKKKKKVKKSTETYKIYIFKVL 60
           MAPTKAEKKPAEKKPAEKTPASSEKKLKAEKKIAKDGGDKKKKKVKKSTETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKTPASSEKKLKAEKKIAKDGGDKKKKKVKKSTETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 139
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Cp4.1LG03g02200 vs. ExPASy TrEMBL
Match: A0A5D3DN75 (Histone H2B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001870 PE=3 SV=1)

HSP 1 Score: 243 bits (621), Expect = 7.18e-81
Identity = 134/139 (96.40%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPAEKTPASSEKKLKAEKKIAKDGGDKKKKKVKKSTETYKIYIFKVL 60
           MAPTKAEKKPAEKKPAEKTP+S+EKK KAEKKIAKD GDKKKKK+KKSTETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKTPSSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 139
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Cp4.1LG03g02200 vs. ExPASy TrEMBL
Match: A0A1S3B6N1 (Histone H2B OS=Cucumis melo OX=3656 GN=LOC103486408 PE=3 SV=1)

HSP 1 Score: 243 bits (621), Expect = 7.18e-81
Identity = 134/139 (96.40%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPAEKTPASSEKKLKAEKKIAKDGGDKKKKKVKKSTETYKIYIFKVL 60
           MAPTKAEKKPAEKKPAEKTP+S+EKK KAEKKIAKD GDKKKKK+KKSTETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKTPSSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 139
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Cp4.1LG03g02200 vs. ExPASy TrEMBL
Match: A0A6J1KUE6 (Histone H2B OS=Cucurbita maxima OX=3661 GN=LOC111498762 PE=3 SV=1)

HSP 1 Score: 242 bits (617), Expect = 2.92e-80
Identity = 133/139 (95.68%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPAEKTPASSEKKLKAEKKIAKDGGDKKKKKVKKSTETYKIYIFKVL 60
           MAPTKAEKKPAEKKPAEKTP S+EKK KAEKKIAKD GDKKKKK+KKSTETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKTPTSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 139
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Cp4.1LG03g02200 vs. TAIR 10
Match: AT2G37470.1 (Histone superfamily protein )

HSP 1 Score: 209.9 bits (533), Expect = 1.3e-54
Identity = 122/140 (87.14%), Postives = 126/140 (90.00%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPAEKTPASSEKKLKAEKKIAKD--GGDKKKKKVKKSTETYKIYIFK 60
           MAP  AEKKPAEKKPA K PA  EK  KAEKKI+KD  G +KKKKK KKS ETYKIYIFK
Sbjct: 1   MAPKAAEKKPAEKKPAGKAPA--EKLPKAEKKISKDAGGSEKKKKKSKKSVETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPD+GIS KAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDVGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTS 139
           GELAKHAVSEGTKAVTKFTS
Sbjct: 121 GELAKHAVSEGTKAVTKFTS 138

[Close]

BLAST of Cp4.1LG03g02200 vs. TAIR 10
Match: AT3G53650.1 (Histone superfamily protein )

HSP 1 Score: 208.4 bits (529), Expect = 3.8e-54
Identity = 121/140 (86.43%), Postives = 127/140 (90.71%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPAEKTPASSEKKLKAEKKIAKDGG-DKKKKKVKKSTETYKIYIFKV 60
           MAP  AEKKPA KKPAEK PA  EK  KAEKKI K+GG +KKKKK KK+ ETYKIYIFKV
Sbjct: 1   MAPKAAEKKPAGKKPAEKAPA--EKLPKAEKKITKEGGSEKKKKKSKKNIETYKIYIFKV 60

Query: 61  LKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPG 120
           LKQVHPDIGIS KAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTAVRLVLPG
Sbjct: 61  LKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 120

Query: 121 ELAKHAVSEGTKAVTKFTSS 140
           EL+KHAVSEGTKAVTKFTSS
Sbjct: 121 ELSKHAVSEGTKAVTKFTSS 138

[Close]

BLAST of Cp4.1LG03g02200 vs. TAIR 10
Match: AT2G28720.1 (Histone superfamily protein )

HSP 1 Score: 207.6 bits (527), Expect = 6.4e-54
Identity = 126/152 (82.89%), Postives = 131/152 (86.18%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPAEKTPAS---------SEKKLKAEKKIAKD----GGDKKKKKVKK 60
           MAP KA KKPAEKKPAEK PA          +EKK KA KK+ K+    G +KKKK+VKK
Sbjct: 1   MAP-KAGKKPAEKKPAEKAPAEEEKVAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKK 60

Query: 61  STETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSR 120
           STETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSR
Sbjct: 61  STETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 140
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

[Close]

BLAST of Cp4.1LG03g02200 vs. TAIR 10
Match: AT5G22880.1 (histone B2 )

HSP 1 Score: 206.1 bits (523), Expect = 1.9e-53
Identity = 120/143 (83.92%), Postives = 128/143 (89.51%), Query Frame = 0


Query: 5   KAEKKPAEKKPAEKTP-----ASSEKKLKAEKKIAKD---GGDKKKKKVKKSTETYKIYI 64
           KA+KKPAEKKPAEKTP     A++EKK KA KK+ K+    GDKKKK+ KK+ ETYKIYI
Sbjct: 3   KADKKPAEKKPAEKTPAAEPAAAAEKKPKAGKKLPKEPAGAGDKKKKRSKKNVETYKIYI 62

Query: 65  FKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLV 124
           FKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA E+SKLARYNKKPTITSREIQTAVRLV
Sbjct: 63  FKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAGESSKLARYNKKPTITSREIQTAVRLV 122

Query: 125 LPGELAKHAVSEGTKAVTKFTSS 140
           LPGELAKHAVSEGTKAVTKFTSS
Sbjct: 123 LPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of Cp4.1LG03g02200 vs. TAIR 10
Match: AT5G59910.1 (Histone superfamily protein )

HSP 1 Score: 206.1 bits (523), Expect = 1.9e-53
Identity = 125/151 (82.78%), Postives = 129/151 (85.43%), Query Frame = 0


Query: 1   MAPTKAEKKPAEKKPAEKTP---------ASSEKKLKAEKKIAKD---GGDKKKKKVKKS 60
           MAP KAEKKPAEKKPA + P         A +EKK KA KK+ K+   GGDKKKK  KKS
Sbjct: 1   MAP-KAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKS 60

Query: 61  TETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120
            ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE
Sbjct: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 140
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g02200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1SU99	2.3e-56	89.29	Probable histone H2B.3 OS=Medicago truncatula OX=3880 PE=3 SV=3	[more]
Q9ZUS0	1.8e-53	87.14	Histone H2B.4 OS=Arabidopsis thaliana OX=3702 GN=At2g37470 PE=1 SV=3	[more]
Q9LFF6	5.3e-53	86.43	Histone H2B.8 OS=Arabidopsis thaliana OX=3702 GN=At3g53650 PE=1 SV=3	[more]
O22582	5.3e-53	84.46	Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3	[more]
Q9SI96	9.0e-53	82.89	Histone H2B.3 OS=Arabidopsis thaliana OX=3702 GN=At2g28720 PE=1 SV=3	[more]

BLAST of Cp4.1LG03g02200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935032.1	1.32e-83	100.00	probable histone H2B.3 [Cucurbita moschata] >XP_022982546.1 probable histone H2B...	[more]
XP_038903506.1	1.04e-80	96.40	probable histone H2B.3 [Benincasa hispida]	[more]
XP_008442575.1	1.48e-80	96.40	PREDICTED: probable histone H2B.3 [Cucumis melo] >KAA0044072.1 histone H2B-like ...	[more]
XP_022958236.1	6.04e-80	95.68	probable histone H2B.3 [Cucurbita moschata] >XP_023005892.1 probable histone H2B...	[more]
XP_004137790.1	5.60e-78	95.68	probable histone H2B.3 [Cucumis sativus] >KGN58892.1 hypothetical protein Csa_00...	[more]

BLAST of Cp4.1LG03g02200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IZM1	6.40e-84	100.00	Histone H2B OS=Cucurbita maxima OX=3661 GN=LOC111481391 PE=3 SV=1	[more]
A0A6J1F4F8	6.40e-84	100.00	Histone H2B OS=Cucurbita moschata OX=3662 GN=LOC111442021 PE=3 SV=1	[more]
A0A5D3DN75	7.18e-81	96.40	Histone H2B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001870 P...	[more]
A0A1S3B6N1	7.18e-81	96.40	Histone H2B OS=Cucumis melo OX=3656 GN=LOC103486408 PE=3 SV=1	[more]
A0A6J1KUE6	2.92e-80	95.68	Histone H2B OS=Cucurbita maxima OX=3661 GN=LOC111498762 PE=3 SV=1	[more]

BLAST of Cp4.1LG03g02200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37470.1	1.3e-54	87.14	Histone superfamily protein	[more]
AT3G53650.1	3.8e-54	86.43	Histone superfamily protein	[more]
AT2G28720.1	6.4e-54	82.89	Histone superfamily protein	[more]
AT5G22880.1	1.9e-53	83.92	histone B2	[more]
AT5G59910.1	1.9e-53	82.78	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 123..136 score: 92.65 coord: 93..110 score: 76.51 coord: 71..91 score: 75.74 coord: 110..123 score: 92.45 coord: 52..70 score: 80.55
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 42..138 e-value: 2.8E-73 score: 259.5
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 5..139
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 107..129
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 5..115 e-value: 1.6E-22 score: 80.3
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 2..139 e-value: 3.7E-60 score: 203.5
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 24..139
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	PANTHER	PTHR23428:SF273	HISTONE H2B.4	coord: 5..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g02200.1	Cp4.1LG03g02200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity