Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCTCTGAACCACCTGGTACTTCACGTTATACTGAACAATGGATCCGTCTCCGGACGGCGGACACCCATCGAACTTGATCACCACCGGGCAGTTCACGTGGAACTGATACCGACCACTGATAAAGTTTCCAACTTTCCAACGGACCCGCCCCTCAATTTTGACAAGCAACGGCAGCGCTCCGACGTCACGATCCTGATTCAGCGCCGTGCTGATGAAGGGCGCAACCGGGACGGCGGTGCCGGAGACGAAAGGGGACCATACGCTAACTTCCTTATGGCCTTGGTAAAACCGAGGGATGAGAGTGTGGAGAGTGATCTGTTGGTTCCGGTAAATGGCGGAGACGTGGAGGTCTTCGTAGTAGATTCCGATGCGGCGGTTGGGGTTGCGGGAAGAGATAGTGAGGAGGAAATTGGAGGTGAGGAAACTGGGGACGGTGGCGTTGAAGGCGTAGACGGTGACGTCTTGGAGGAGGAAAGTGGGCTTGGTGGGGCGGAGGACGGCCCAGATTATAAGGATGCTGAGGAGGAGGAGGAAGATTAA
mRNA sequence
ATGGCATCTCTGAACCACCTGGTACTTCACGTTATACTGAACAATGGATCCGTCTCCGGACGGCGGACACCCATCGAACTTGATCACCACCGGGCAGTTCACGTGGAACTGATACCGACCACTGATAAAGTTTCCAACTTTCCAACGGACCCGCCCCTCAATTTTGACAAGCAACGGCAGCGCTCCGACGTCACGATCCTGATTCAGCGCCGTGCTGATGAAGGGCGCAACCGGGACGGCGGTGCCGGAGACGAAAGGGGACCATACGCTAACTTCCTTATGGCCTTGGTAAAACCGAGGGATGAGAGTGTGGAGAGTGATCTGTTGGTTCCGGTAAATGGCGGAGACGTGGAGGTCTTCGTAGTAGATTCCGATGCGGCGGTTGGGGTTGCGGGAAGAGATAGTGAGGAGGAAATTGGAGGTGAGGAAACTGGGGACGGTGGCGTTGAAGGCGTAGACGGTGACGTCTTGGAGGAGGAAAGTGGGCTTGGTGGGGCGGAGGACGGCCCAGATTATAAGGATGCTGAGGAGGAGGAGGAAGATTAA
Coding sequence (CDS)
ATGGCATCTCTGAACCACCTGGTACTTCACGTTATACTGAACAATGGATCCGTCTCCGGACGGCGGACACCCATCGAACTTGATCACCACCGGGCAGTTCACGTGGAACTGATACCGACCACTGATAAAGTTTCCAACTTTCCAACGGACCCGCCCCTCAATTTTGACAAGCAACGGCAGCGCTCCGACGTCACGATCCTGATTCAGCGCCGTGCTGATGAAGGGCGCAACCGGGACGGCGGTGCCGGAGACGAAAGGGGACCATACGCTAACTTCCTTATGGCCTTGGTAAAACCGAGGGATGAGAGTGTGGAGAGTGATCTGTTGGTTCCGGTAAATGGCGGAGACGTGGAGGTCTTCGTAGTAGATTCCGATGCGGCGGTTGGGGTTGCGGGAAGAGATAGTGAGGAGGAAATTGGAGGTGAGGAAACTGGGGACGGTGGCGTTGAAGGCGTAGACGGTGACGTCTTGGAGGAGGAAAGTGGGCTTGGTGGGGCGGAGGACGGCCCAGATTATAAGGATGCTGAGGAGGAGGAGGAAGATTAA
Protein sequence
MASLNHLVLHVILNNGSVSGRRTPIELDHHRAVHVELIPTTDKVSNFPTDPPLNFDKQRQRSDVTILIQRRADEGRNRDGGAGDERGPYANFLMALVKPRDESVESDLLVPVNGGDVEVFVVDSDAAVGVAGRDSEEEIGGEETGDGGVEGVDGDVLEEESGLGGAEDGPDYKDAEEEEED
Homology
BLAST of Cp4.1LG03g00610 vs. NCBI nr
Match:
KZM99200.1 (hypothetical protein DCAR_013438 [Daucus carota subsp. sativus])
HSP 1 Score: 122 bits (305), Expect = 1.62e-30
Identity = 74/145 (51.03%), Postives = 94/145 (64.83%), Query Frame = 0
Query: 34 HVELIPTTDKVSNFPTDPPLNFDKQRQRSDVTILIQRRADEGRNRDGGAGDERGPYANFL 93
H+ +IPT + SNFP+ P ++ D Q+ +L QR R+RD GA ++R P
Sbjct: 53 HMNMIPTRSEGSNFPSHPSIHLDHQQYVPAGLVLAQRHPVVRRHRDVGAVNKRRPDVGVF 112
Query: 94 MALVKPRDESVESDLLVPVNGGDVEVFVVDSDAAVGVAGRDSEEEIGGEETGDGG-VEGV 153
+ALV D SDLL PV G DVE+ VVDSD AVGV+G D + E+GGEE GDGG VEGV
Sbjct: 113 VALVGGEDGGEVSDLLAPVGGEDVELVVVDSDFAVGVSGSDGDLEVGGEEVGDGGDVEGV 172
Query: 154 DGDVLEEESGLGGAEDGPDYKDAEE 177
DG VLE E+GL G E+GPD ++ EE
Sbjct: 173 DGGVLEGEAGLFGLENGPDDEEGEE 197
BLAST of Cp4.1LG03g00610 vs. NCBI nr
Match:
RXH76386.1 (hypothetical protein DVH24_019274 [Malus domestica])
HSP 1 Score: 112 bits (279), Expect = 8.11e-28
Identity = 68/144 (47.22%), Postives = 92/144 (63.89%), Query Frame = 0
Query: 37 LIPTTDKVSNFPTDPPLNFDKQRQRSDVTILIQRRADEGRNRDGGAGDERGPYANFLMAL 96
++PT D+ ++ P DP ++ D+Q+ R + +L Q + D GA DER P + L+AL
Sbjct: 1 MVPTGDEGADLPPDPAVHLDEQKNRPGILVLPQSDGVVRSDGDVGAVDERRPDVDVLVAL 60
Query: 97 VKPRDESVESDLLVPVNGGDVEVFVVDSDAAVGVAGRDSEEEIGGEETGDGGVEGVDGDV 156
V RDE E DLL V DVE VVD+D V V+G D + E GGE+ G GGVE DGDV
Sbjct: 61 VYRRDERRERDLLRTVGRVDVEPVVVDADLVVRVSGGDGDLEAGGEDVGGGGVEVEDGDV 120
Query: 157 LEEESGLGGAEDGPDYKDAEEEEE 180
LE+E+GLGG EDGP +D ++E+E
Sbjct: 121 LEDEAGLGGLEDGPHDEDCDKEDE 144
BLAST of Cp4.1LG03g00610 vs. NCBI nr
Match:
KZV15914.1 (hypothetical protein F511_29086 [Dorcoceras hygrometricum])
HSP 1 Score: 104 bits (259), Expect = 4.18e-24
Identity = 67/148 (45.27%), Postives = 92/148 (62.16%), Query Frame = 0
Query: 35 VELIPTTDKVSNFPTDPPLNFDKQRQRSDVTI-LIQRRADEGRNRDGGAGDERGPYANFL 94
+++IPT +FP NFD+ V + L + + R+RD A DER PY + L
Sbjct: 1 MDMIPTRRNRPDFPFQAAFNFDRHLDGGAVALHLGECDSVVRRDRDVAAVDERRPYVDVL 60
Query: 95 MALVKPRDESVESDLLVPVNGGDVEVFVVDSDAAVGVAGRDSEEEIGGEETGDGGVEGVD 154
+ALV RD+ VE DLLV V G +V++ VVD+D+ VGVAG D + + GGE+ G G VE D
Sbjct: 61 VALVDRRDDGVEGDLLVAVGGVNVQLIVVDADSGVGVAGVDGDLQGGGEDVGSGDVERED 120
Query: 155 GDVLEEESGLGGAEDGPDYKDAEEEEED 181
G VLE ESG G EDGP ++ E+++ED
Sbjct: 121 GGVLESESGFLGLEDGPGDQNCEQDDED 148
BLAST of Cp4.1LG03g00610 vs. NCBI nr
Match:
RXH81415.1 (hypothetical protein DVH24_034836 [Malus domestica])
HSP 1 Score: 97.1 bits (240), Expect = 5.80e-22
Identity = 61/144 (42.36%), Postives = 89/144 (61.81%), Query Frame = 0
Query: 37 LIPTTDKVSNFPTDPPLNFDKQRQRSDVTILIQRRADEGRNRDGGAGDERGPYANFLMAL 96
++PT + ++F DP + D+ + R + +L + + D GA D+R P + L+AL
Sbjct: 1 MVPTGYEGADFKPDPAVYLDEHKNRPGILVLPESDGVVRCDGDLGAVDKRRPDVDVLVAL 60
Query: 97 VKPRDESVESDLLVPVNGGDVEVFVVDSDAAVGVAGRDSEEEIGGEETGDGGVEGVDGDV 156
V RDE E DLL V G DV++ VVD++ V V+G D + E GGE+ GDGGVE D DV
Sbjct: 61 VHRRDERRERDLLRTVRGVDVKLVVVDAELVVRVSGGDGDLEAGGEDVGDGGVEVEDSDV 120
Query: 157 LEEESGLGGAEDGPDYKDAEEEEE 180
LE+E+GLG ED P ++ +EE+E
Sbjct: 121 LEDEAGLGRLEDSPHDENCDEEDE 144
BLAST of Cp4.1LG03g00610 vs. NCBI nr
Match:
PON70095.1 (hypothetical protein PanWU01x14_082700 [Parasponia andersonii])
HSP 1 Score: 96.3 bits (238), Expect = 9.84e-22
Identity = 60/137 (43.80%), Postives = 80/137 (58.39%), Query Frame = 0
Query: 37 LIPTTDKVSNFPTDPPLNFDKQRQRSDVTILIQRRADEGRNRDGGAGDERGPYANFLMAL 96
++ D+ ++ PT P +N + + + +L Q + + D A ++R P N L+AL
Sbjct: 1 MVTARDEGADLPTHPSVNIEVEEDGAVTLVLGQSEGVKRGDGDEVAVNKRRPDVNVLVAL 60
Query: 97 VKPRDESVESDLLVPVNGGDVEVFVVDSDAAVGVAGRDSEEEIGGEETGDGGVEGVDGDV 156
V RD DLLV V+ DVE VVD D VGVA D E+GG+E GD GVEGVDGDV
Sbjct: 61 VGGRDSGAVGDLLVMVDREDVEPVVVDPDLVVGVARGDGNLEVGGQEVGDRGVEGVDGDV 120
Query: 157 LEEESGLGGAEDGPDYK 173
LE ESGL G + GP Y+
Sbjct: 121 LEYESGLRGLQYGPHYE 137
BLAST of Cp4.1LG03g00610 vs. ExPASy TrEMBL
Match:
A0A0A0LE53 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G780520 PE=4 SV=1)
HSP 1 Score: 184 bits (467), Expect = 2.12e-56
Identity = 99/149 (66.44%), Postives = 120/149 (80.54%), Query Frame = 0
Query: 33 VHVELIPTTDKVSNFPTDPPLNFDKQRQRSDVTILIQRRADEGRNRDGGAGDERGPYANF 92
+ VEL+P +D+ S+ P++ +NFD++ Q S V +LIQ R DEGR+R GGAGDERGPY +
Sbjct: 5 LRVELVPPSDEASDLPSNLAVNFDQEHQCSGVPVLIQLRTDEGRDRHGGAGDERGPYVDV 64
Query: 93 LMALVKPRDESVESDLLVPVNGGDVEVFVVDSDAAVGVAGRDSEEEIGGEETGDGGVEGV 152
LMALV+ RD+ ESDLLV V+G DVE VVDSD+AV VAG +SEEEIGGEE GDGGVEGV
Sbjct: 65 LMALVETRDDGPESDLLVSVDGVDVEFVVVDSDSAVWVAGGNSEEEIGGEEAGDGGVEGV 124
Query: 153 DGDVLEEESGLGGAEDGPDYKDAEEEEED 181
DGDVL+EESG GG EDGPD +D EE+EED
Sbjct: 125 DGDVLKEESGFGGTEDGPDDEDGEEDEED 153
BLAST of Cp4.1LG03g00610 vs. ExPASy TrEMBL
Match:
A0A162ADF4 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013438 PE=4 SV=1)
HSP 1 Score: 122 bits (305), Expect = 7.83e-31
Identity = 74/145 (51.03%), Postives = 94/145 (64.83%), Query Frame = 0
Query: 34 HVELIPTTDKVSNFPTDPPLNFDKQRQRSDVTILIQRRADEGRNRDGGAGDERGPYANFL 93
H+ +IPT + SNFP+ P ++ D Q+ +L QR R+RD GA ++R P
Sbjct: 53 HMNMIPTRSEGSNFPSHPSIHLDHQQYVPAGLVLAQRHPVVRRHRDVGAVNKRRPDVGVF 112
Query: 94 MALVKPRDESVESDLLVPVNGGDVEVFVVDSDAAVGVAGRDSEEEIGGEETGDGG-VEGV 153
+ALV D SDLL PV G DVE+ VVDSD AVGV+G D + E+GGEE GDGG VEGV
Sbjct: 113 VALVGGEDGGEVSDLLAPVGGEDVELVVVDSDFAVGVSGSDGDLEVGGEEVGDGGDVEGV 172
Query: 154 DGDVLEEESGLGGAEDGPDYKDAEE 177
DG VLE E+GL G E+GPD ++ EE
Sbjct: 173 DGGVLEGEAGLFGLENGPDDEEGEE 197
BLAST of Cp4.1LG03g00610 vs. ExPASy TrEMBL
Match:
A0A498HYB9 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_019274 PE=4 SV=1)
HSP 1 Score: 112 bits (279), Expect = 3.93e-28
Identity = 68/144 (47.22%), Postives = 92/144 (63.89%), Query Frame = 0
Query: 37 LIPTTDKVSNFPTDPPLNFDKQRQRSDVTILIQRRADEGRNRDGGAGDERGPYANFLMAL 96
++PT D+ ++ P DP ++ D+Q+ R + +L Q + D GA DER P + L+AL
Sbjct: 1 MVPTGDEGADLPPDPAVHLDEQKNRPGILVLPQSDGVVRSDGDVGAVDERRPDVDVLVAL 60
Query: 97 VKPRDESVESDLLVPVNGGDVEVFVVDSDAAVGVAGRDSEEEIGGEETGDGGVEGVDGDV 156
V RDE E DLL V DVE VVD+D V V+G D + E GGE+ G GGVE DGDV
Sbjct: 61 VYRRDERRERDLLRTVGRVDVEPVVVDADLVVRVSGGDGDLEAGGEDVGGGGVEVEDGDV 120
Query: 157 LEEESGLGGAEDGPDYKDAEEEEE 180
LE+E+GLGG EDGP +D ++E+E
Sbjct: 121 LEDEAGLGGLEDGPHDEDCDKEDE 144
BLAST of Cp4.1LG03g00610 vs. ExPASy TrEMBL
Match:
A0A2Z7A2Z7 (Uncharacterized protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_29086 PE=4 SV=1)
HSP 1 Score: 104 bits (259), Expect = 2.02e-24
Identity = 67/148 (45.27%), Postives = 92/148 (62.16%), Query Frame = 0
Query: 35 VELIPTTDKVSNFPTDPPLNFDKQRQRSDVTI-LIQRRADEGRNRDGGAGDERGPYANFL 94
+++IPT +FP NFD+ V + L + + R+RD A DER PY + L
Sbjct: 1 MDMIPTRRNRPDFPFQAAFNFDRHLDGGAVALHLGECDSVVRRDRDVAAVDERRPYVDVL 60
Query: 95 MALVKPRDESVESDLLVPVNGGDVEVFVVDSDAAVGVAGRDSEEEIGGEETGDGGVEGVD 154
+ALV RD+ VE DLLV V G +V++ VVD+D+ VGVAG D + + GGE+ G G VE D
Sbjct: 61 VALVDRRDDGVEGDLLVAVGGVNVQLIVVDADSGVGVAGVDGDLQGGGEDVGSGDVERED 120
Query: 155 GDVLEEESGLGGAEDGPDYKDAEEEEED 181
G VLE ESG G EDGP ++ E+++ED
Sbjct: 121 GGVLESESGFLGLEDGPGDQNCEQDDED 148
BLAST of Cp4.1LG03g00610 vs. ExPASy TrEMBL
Match:
A0A1J3IDI1 (Uncharacterized protein OS=Noccaea caerulescens OX=107243 GN=MP_TR12312_c0_g1_i1_g.36122 PE=4 SV=1)
HSP 1 Score: 97.1 bits (240), Expect = 1.72e-22
Identity = 57/124 (45.97%), Postives = 80/124 (64.52%), Query Frame = 0
Query: 42 DKVSNFPTDPPLNFDKQRQRSDVTILIQRRADEGRNRDGGAGDERGPYANFLMALVKPRD 101
+K NFP ++ D QR + ++++I+ E + +GG+ D+R PY +F ++L+ RD
Sbjct: 6 NKSPNFPPHSAVSTDDQRNDAVISVVIKTNGVERSDGNGGSVDKRRPYVDFFVSLISRRD 65
Query: 102 ESVESDLLVPVNGGDVEVFVVDSDAAVGVAGRDSEEEIGGEET----GDGGVEGVDGDVL 161
ESDLL PV+G DVE VVD+D VGV GR+S+ EIG EE GD VEGVDG VL
Sbjct: 66 RCSESDLLAPVSGVDVETVVVDADLVVGVPGRESDLEIGSEEVRWIAGD--VEGVDGGVL 125
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KZM99200.1 | 1.62e-30 | 51.03 | hypothetical protein DCAR_013438 [Daucus carota subsp. sativus] | [more] |
RXH76386.1 | 8.11e-28 | 47.22 | hypothetical protein DVH24_019274 [Malus domestica] | [more] |
KZV15914.1 | 4.18e-24 | 45.27 | hypothetical protein F511_29086 [Dorcoceras hygrometricum] | [more] |
RXH81415.1 | 5.80e-22 | 42.36 | hypothetical protein DVH24_034836 [Malus domestica] | [more] |
PON70095.1 | 9.84e-22 | 43.80 | hypothetical protein PanWU01x14_082700 [Parasponia andersonii] | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0LE53 | 2.12e-56 | 66.44 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G780520 PE=4 SV=1 | [more] |
A0A162ADF4 | 7.83e-31 | 51.03 | Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013438 ... | [more] |
A0A498HYB9 | 3.93e-28 | 47.22 | Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_019274 PE=4 SV=1 | [more] |
A0A2Z7A2Z7 | 2.02e-24 | 45.27 | Uncharacterized protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_29086 PE=4... | [more] |
A0A1J3IDI1 | 1.72e-22 | 45.97 | Uncharacterized protein OS=Noccaea caerulescens OX=107243 GN=MP_TR12312_c0_g1_i1... | [more] |
Match Name | E-value | Identity | Description | |