Cp4.1LG03g00390 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g00390
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RING-H2 finger protein ATL70-like
Location	Cp4.1LG03: 1681697 .. 1682197 (+)
RNA-Seq Expression	Cp4.1LG03g00390
Synteny	Cp4.1LG03g00390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAACTCCACAGGCTCCGGCGGATCAGATGCCTCCGGCAACGTCGGCACTTTCCCCTACATAGTCGGAATTTCAGTCGGAGTTCTTTTCCTTCTCACAACCGTAACAATCGCTACCTATTTATGCACCAGAACCACCGTTCCGCAGCCGAATCGCCGTCGTCGGCCAGGGGAACGGCGCGATGTCATCGTCGATTTTGGACCGGGGCTCGAAGATGAGGCCATTAATGAATATCCGAAGATTCTGTACTCGGAAAAGAAATTGGAGGGAAAAATGGAGTCCGCCGCTGCGAGTGGTTGTTCGATTTGTTTGGGGGACTATAAAAACGAGGATGTTCTACGGTTGTTGCCGGATTGTGGTCATATGTTTCACAGCGGCTGTATCGATCCGTGGTTAAGGCTGAACCCTAGCTGCCCTGTTTGCAGAACTTCGCCGGTCCCGACGCCGCTTTCCACCCCTCTGGCGGAGGTGGTTCCGTTGGCCAACGGAAGGAGTTGA

mRNA sequence

ATGAACAACTCCACAGGCTCCGGCGGATCAGATGCCTCCGGCAACGTCGGCACTTTCCCCTACATAGTCGGAATTTCAGTCGGAGTTCTTTTCCTTCTCACAACCGTAACAATCGCTACCTATTTATGCACCAGAACCACCGTTCCGCAGCCGAATCGCCGTCGTCGGCCAGGGGAACGGCGCGATGTCATCGTCGATTTTGGACCGGGGCTCGAAGATGAGGCCATTAATGAATATCCGAAGATTCTGTACTCGGAAAAGAAATTGGAGGGAAAAATGGAGTCCGCCGCTGCGAGTGGTTGTTCGATTTGTTTGGGGGACTATAAAAACGAGGATGTTCTACGGTTGTTGCCGGATTGTGGTCATATGTTTCACAGCGGCTGTATCGATCCGTGGTTAAGGCTGAACCCTAGCTGCCCTGTTTGCAGAACTTCGCCGGTCCCGACGCCGCTTTCCACCCCTCTGGCGGAGGTGGTTCCGTTGGCCAACGGAAGGAGTTGA

Coding sequence (CDS)

ATGAACAACTCCACAGGCTCCGGCGGATCAGATGCCTCCGGCAACGTCGGCACTTTCCCCTACATAGTCGGAATTTCAGTCGGAGTTCTTTTCCTTCTCACAACCGTAACAATCGCTACCTATTTATGCACCAGAACCACCGTTCCGCAGCCGAATCGCCGTCGTCGGCCAGGGGAACGGCGCGATGTCATCGTCGATTTTGGACCGGGGCTCGAAGATGAGGCCATTAATGAATATCCGAAGATTCTGTACTCGGAAAAGAAATTGGAGGGAAAAATGGAGTCCGCCGCTGCGAGTGGTTGTTCGATTTGTTTGGGGGACTATAAAAACGAGGATGTTCTACGGTTGTTGCCGGATTGTGGTCATATGTTTCACAGCGGCTGTATCGATCCGTGGTTAAGGCTGAACCCTAGCTGCCCTGTTTGCAGAACTTCGCCGGTCCCGACGCCGCTTTCCACCCCTCTGGCGGAGGTGGTTCCGTTGGCCAACGGAAGGAGTTGA

Protein sequence

MNNSTGSGGSDASGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGERRDVIVDFGPGLEDEAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVLRLLPDCGHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS

Homology

[Close]

BLAST of Cp4.1LG03g00390 vs. ExPASy Swiss-Prot
Match: Q8RX29 (RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.5e-41
Identity = 89/169 (52.66%), Postives = 115/169 (68.05%), Query Frame = 0


Query: 1   MNNSTGSGGSDASGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTV-PQPNRRRRPGE 60
           M +  G  G+D   ++G F Y +G+S+GVL L+TT+T+ +Y CTR  +   P++  +   
Sbjct: 49  MPDYNGLLGTD---DIGGFRYGIGVSIGVLLLITTITLTSYYCTRNQLSSSPSQTNQDST 108

Query: 61  R-----RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVL 120
           R       VI+D  PGL+++ I  YPKILYSE K         AS C+ICLGDYK + +L
Sbjct: 109 RIHHHHHHVIIDVVPGLDEDTIQSYPKILYSEAK-----GPTTASCCAICLGDYKGKHLL 168

Query: 121 RLLPDCGHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLAN 164
           R LPDC H+FH  CID WLRLNP+CPVCRTSP+PTPLSTPLAEVVPLA+
Sbjct: 169 RQLPDCNHLFHLKCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLAS 209

[Close]

BLAST of Cp4.1LG03g00390 vs. ExPASy Swiss-Prot
Match: Q9FG21 (Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 4.9e-37
Identity = 77/171 (45.03%), Postives = 109/171 (63.74%), Query Frame = 0


Query: 16  VGTFPYIVGISVGVLFLLTTVTIATYLCTR-------TTVPQPNRRRR-------PGERR 75
           +G   Y +G+S+G+L L+TT+T+ +Y CTR       TT P+  RR+R       PG+ R
Sbjct: 20  MGGLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESNGTLPPGQER 79

Query: 76  --------DVIVDFGPGLEDEAINEYPKILYSEKKLEGKM--ESAAASGCSICLGDYKNE 135
                   D +V    GL +E I  +PK+ Y E ++   +  ES+  S CSICL DYK  
Sbjct: 80  FDFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKM 139

Query: 136 DVLRLLPDCGHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLA 163
           D++R+LPDC H+FH  C+DPWLRL+P+CPVCRTSP+P+P  TP+A+VVP +
Sbjct: 140 DMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFS 190

[Close]

BLAST of Cp4.1LG03g00390 vs. ExPASy Swiss-Prot
Match: O82353 (RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.3e-26
Identity = 65/169 (38.46%), Postives = 93/169 (55.03%), Query Frame = 0


Query: 19  FPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGERRDVIV------------- 78
           F Y + I++G L LL+TV +++Y+C R +  +       G+R   ++             
Sbjct: 35  FGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVILPRIIFVAEEDNE 94

Query: 79  -----DFGPGLEDEAINEYPKILYSEKKLEGKMESAAASG---CSICLGDYKNEDVLRLL 138
                D   GL+   IN YPK  +S+       +     G   CSICL +YK  ++LR++
Sbjct: 95  DLEAGDVVVGLDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRMM 154

Query: 139 PDCGHMFHSGCIDPWLRLNPSCPVCRTSPVP----TPLSTPLAEVVPLA 163
           P+C H FH  C+D WL+LN SCPVCR SP+P    TPLSTPL+EVVPL+
Sbjct: 155 PECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEVVPLS 203

[Close]

BLAST of Cp4.1LG03g00390 vs. ExPASy Swiss-Prot
Match: Q9FL42 (Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 9.9e-22
Identity = 52/149 (34.90%), Postives = 86/149 (57.72%), Query Frame = 0


Query: 21  YIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGERRDVIVDFGP-------GLED 80
           Y + I+V +L L++ + +A+Y+C R+         R     DV++D          GL+ 
Sbjct: 15  YGIAIAVSILVLISFIMLASYICIRS-----KSTGRDEATSDVVLDLPSPAAEVKLGLDR 74

Query: 81  EAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVLRLLPDCGHMFHSGCIDPWL 140
             I  YP+I+  + +   ++       CSICL DY+  + +R +P+C H FH+ C+D WL
Sbjct: 75  PVIESYPRIVLGDSR---RLPRPNNGPCSICLCDYEAREPVRCIPECNHCFHTDCVDEWL 134

Query: 141 RLNPSCPVCRTSPVPTPLSTPLAEVVPLA 163
           R + +CP+CR SP P+ L+TPL+++VPLA
Sbjct: 135 RTSATCPLCRNSPAPSRLATPLSDLVPLA 155

[Close]

BLAST of Cp4.1LG03g00390 vs. ExPASy Swiss-Prot
Match: Q9M313 (RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.9e-20
Identity = 60/175 (34.29%), Postives = 93/175 (53.14%), Query Frame = 0


Query: 21  YIVGISVGVLFLLTTVTIATYLCTR-------TTVPQPNRRRRPGERRDVI--------- 80
           Y + I++G L L++T+ +++Y+C R        +    N      +R  ++         
Sbjct: 28  YSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASFSDRGVIVPRIIFVAED 87

Query: 81  --VDFG----PGLEDEAINEYPKILYSEKKLEGKME-------SAAASGCSICLGDYKNE 140
             ++ G     GL+   IN YPK  ++ K +   +            + CSICL +Y  E
Sbjct: 88  DDLESGNVVVGGLDHSVINSYPKFHFT-KDITAVVNGDGFHDGEGRETTCSICLCEYMEE 147

Query: 141 DVLRLLPDCGHMFHSGCIDPWLRLNPSCPVCRTSPVP----TPLSTPLAEVVPLA 163
           ++LR++P+C H FH  C+D WL+LN SCPVCR SP+P    TP STPL+EVVPL+
Sbjct: 148 EMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTPLSEVVPLS 201

[Close]

BLAST of Cp4.1LG03g00390 vs. NCBI nr
Match: XP_023528902.1 (RING-H2 finger protein ATL70 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 338 bits (868), Expect = 2.43e-117
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MNNSTGSGGSDASGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60
           MNNSTGSGGSDASGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER
Sbjct: 1   MNNSTGSGGSDASGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60

Query: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVLRLLPDC 120
           RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVLRLLPDC
Sbjct: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVLRLLPDC 120

Query: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 166
           GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS
Sbjct: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 166

[Close]

BLAST of Cp4.1LG03g00390 vs. NCBI nr
Match: XP_022983126.1 (RING-H2 finger protein ATL70-like [Cucurbita maxima])

HSP 1 Score: 335 bits (858), Expect = 8.13e-116
Identity = 165/166 (99.40%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MNNSTGSGGSDASGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60
           MNNSTGSGGSDASGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQ NRRRRPGER
Sbjct: 1   MNNSTGSGGSDASGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQLNRRRRPGER 60

Query: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVLRLLPDC 120
           RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVLRLLPDC
Sbjct: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVLRLLPDC 120

Query: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 166
           GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS
Sbjct: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 166

[Close]

BLAST of Cp4.1LG03g00390 vs. NCBI nr
Match: KAG6580759.1 (putative RING-H2 finger protein ATL71, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017512.1 putative RING-H2 finger protein ATL71, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 335 bits (858), Expect = 8.13e-116
Identity = 163/165 (98.79%), Postives = 165/165 (100.00%), Query Frame = 0


Query: 1   MNNSTGSGGSDASGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60
           MNNSTGSGGSDA+GNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER
Sbjct: 1   MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60

Query: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVLRLLPDC 120
           RDVIVDFGPGLEDEAINEYPKILYSEKKLEGK+ESAAASGCSICLGDYKNEDVLRLLPDC
Sbjct: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC 120

Query: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGR 165
           GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGR
Sbjct: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGR 165

[Close]

BLAST of Cp4.1LG03g00390 vs. NCBI nr
Match: XP_022935317.1 (RING-H2 finger protein ATL70-like [Cucurbita moschata])

HSP 1 Score: 335 bits (858), Expect = 8.13e-116
Identity = 163/166 (98.19%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MNNSTGSGGSDASGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60
           MNNSTGSGGSDA+GNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER
Sbjct: 1   MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60

Query: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVLRLLPDC 120
           RD IVDFGPGLEDEAINEYPKILYSEKKLEGK+ESAAASGCSICLGDYKNEDVLRLLPDC
Sbjct: 61  RDAIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC 120

Query: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 166
           GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS
Sbjct: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 166

[Close]

BLAST of Cp4.1LG03g00390 vs. NCBI nr
Match: KAA0043799.1 (RING-H2 finger protein ATL70-like [Cucumis melo var. makuwa] >TYK25334.1 RING-H2 finger protein ATL70-like [Cucumis melo var. makuwa])

HSP 1 Score: 258 bits (660), Expect = 1.09e-85
Identity = 127/166 (76.51%), Postives = 143/166 (86.14%), Query Frame = 0


Query: 1   MNNSTGSGGSDASGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60
           MN+ + SGG D    +G+FP+IVGISVG+LFLLTT+TI TYLCTRTTVPQPNRR +   R
Sbjct: 1   MNSPSDSGGGD----IGSFPFIVGISVGILFLLTTLTITTYLCTRTTVPQPNRRLQQEGR 60

Query: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVLRLLPDC 120
           RD +VDF  GLEDE IN YPKILYSE KLE K+ESAAA+GCSICL DYK++DVLRLLPDC
Sbjct: 61  RDFVVDFVQGLEDEVINGYPKILYSEAKLERKLESAAANGCSICLVDYKDDDVLRLLPDC 120

Query: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 166
           GH+FH  CIDPWLRLNPSCPVCRTSP+PTP+STPLAEVVPLA GRS
Sbjct: 121 GHLFHGSCIDPWLRLNPSCPVCRTSPLPTPISTPLAEVVPLAIGRS 162

[Close]

BLAST of Cp4.1LG03g00390 vs. ExPASy TrEMBL
Match: A0A6J1J186 (RING-H2 finger protein ATL70-like OS=Cucurbita maxima OX=3661 GN=LOC111481769 PE=4 SV=1)

HSP 1 Score: 335 bits (858), Expect = 3.94e-116
Identity = 165/166 (99.40%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MNNSTGSGGSDASGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60
           MNNSTGSGGSDASGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQ NRRRRPGER
Sbjct: 1   MNNSTGSGGSDASGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQLNRRRRPGER 60

Query: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVLRLLPDC 120
           RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVLRLLPDC
Sbjct: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVLRLLPDC 120

Query: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 166
           GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS
Sbjct: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 166

[Close]

BLAST of Cp4.1LG03g00390 vs. ExPASy TrEMBL
Match: A0A6J1F576 (RING-H2 finger protein ATL70-like OS=Cucurbita moschata OX=3662 GN=LOC111442240 PE=4 SV=1)

HSP 1 Score: 335 bits (858), Expect = 3.94e-116
Identity = 163/166 (98.19%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MNNSTGSGGSDASGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60
           MNNSTGSGGSDA+GNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER
Sbjct: 1   MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60

Query: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVLRLLPDC 120
           RD IVDFGPGLEDEAINEYPKILYSEKKLEGK+ESAAASGCSICLGDYKNEDVLRLLPDC
Sbjct: 61  RDAIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC 120

Query: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 166
           GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS
Sbjct: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 166

[Close]

BLAST of Cp4.1LG03g00390 vs. ExPASy TrEMBL
Match: A0A0A0LEU3 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G782740 PE=4 SV=1)

HSP 1 Score: 259 bits (663), Expect = 1.83e-86
Identity = 128/166 (77.11%), Postives = 141/166 (84.94%), Query Frame = 0


Query: 1   MNNSTGSGGSDASGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60
           MN+S  SGG D    +G FPYI+GISVG+LFLLTT+TI TYLCTRTTVP PNRR   G R
Sbjct: 1   MNSSPDSGGGD----IGGFPYILGISVGILFLLTTLTITTYLCTRTTVPPPNRRLPQGGR 60

Query: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVLRLLPDC 120
           RD +VDF  GLEDE IN YPKILYSE KLE K+ESAA +GCSICL DYK++DVLRLLPDC
Sbjct: 61  RDFVVDFVQGLEDEVINGYPKILYSEAKLERKLESAATNGCSICLVDYKDDDVLRLLPDC 120

Query: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 166
           GH+FH GCIDPWLRLNPSCPVCRTSPVPTP+STPLAEV+PLA GRS
Sbjct: 121 GHLFHCGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVIPLAVGRS 162

[Close]

BLAST of Cp4.1LG03g00390 vs. ExPASy TrEMBL
Match: A0A5A7TRH5 (RING-H2 finger protein ATL70-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004730 PE=4 SV=1)

HSP 1 Score: 258 bits (660), Expect = 5.25e-86
Identity = 127/166 (76.51%), Postives = 143/166 (86.14%), Query Frame = 0


Query: 1   MNNSTGSGGSDASGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60
           MN+ + SGG D    +G+FP+IVGISVG+LFLLTT+TI TYLCTRTTVPQPNRR +   R
Sbjct: 1   MNSPSDSGGGD----IGSFPFIVGISVGILFLLTTLTITTYLCTRTTVPQPNRRLQQEGR 60

Query: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVLRLLPDC 120
           RD +VDF  GLEDE IN YPKILYSE KLE K+ESAAA+GCSICL DYK++DVLRLLPDC
Sbjct: 61  RDFVVDFVQGLEDEVINGYPKILYSEAKLERKLESAAANGCSICLVDYKDDDVLRLLPDC 120

Query: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 166
           GH+FH  CIDPWLRLNPSCPVCRTSP+PTP+STPLAEVVPLA GRS
Sbjct: 121 GHLFHGSCIDPWLRLNPSCPVCRTSPLPTPISTPLAEVVPLAIGRS 162

[Close]

BLAST of Cp4.1LG03g00390 vs. ExPASy TrEMBL
Match: A0A7N0V3V8 (RING-type domain-containing protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)

HSP 1 Score: 199 bits (507), Expect = 1.10e-62
Identity = 94/165 (56.97%), Postives = 121/165 (73.33%), Query Frame = 0


Query: 1   MNNSTGSGGSDASGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60
           MNN+T SG    S  VG F Y +GIS+G+L L+TT+TIA+Y C RT    P   R P   
Sbjct: 1   MNNTTDSGTFFGSYAVGGFSYGIGISIGILLLITTITIASYFCARTATGSPQGARSPPSA 60

Query: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVLRLLPDC 120
            ++++D G  +++E I  YPK+LYSE + +GK  +  A+ CSICL DYK  D LR+LPDC
Sbjct: 61  HEIVLDVG--IDEETIETYPKLLYSEARRQGKASTTTATCCSICLADYKGPDALRMLPDC 120

Query: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGR 165
           GH+FH GC+DPWLRL+P+CPVCRTSP+P+PLSTPLAEVVPLA+ R
Sbjct: 121 GHLFHVGCVDPWLRLHPTCPVCRTSPLPSPLSTPLAEVVPLASRR 163

[Close]

BLAST of Cp4.1LG03g00390 vs. TAIR 10
Match: AT2G35910.1 (RING/U-box superfamily protein )

HSP 1 Score: 169.9 bits (429), Expect = 1.8e-42
Identity = 89/169 (52.66%), Postives = 115/169 (68.05%), Query Frame = 0


Query: 1   MNNSTGSGGSDASGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTV-PQPNRRRRPGE 60
           M +  G  G+D   ++G F Y +G+S+GVL L+TT+T+ +Y CTR  +   P++  +   
Sbjct: 49  MPDYNGLLGTD---DIGGFRYGIGVSIGVLLLITTITLTSYYCTRNQLSSSPSQTNQDST 108

Query: 61  R-----RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVL 120
           R       VI+D  PGL+++ I  YPKILYSE K         AS C+ICLGDYK + +L
Sbjct: 109 RIHHHHHHVIIDVVPGLDEDTIQSYPKILYSEAK-----GPTTASCCAICLGDYKGKHLL 168

Query: 121 RLLPDCGHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLAN 164
           R LPDC H+FH  CID WLRLNP+CPVCRTSP+PTPLSTPLAEVVPLA+
Sbjct: 169 RQLPDCNHLFHLKCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLAS 209

[Close]

BLAST of Cp4.1LG03g00390 vs. TAIR 10
Match: AT5G06490.1 (RING/U-box superfamily protein )

HSP 1 Score: 155.6 bits (392), Expect = 3.5e-38
Identity = 77/171 (45.03%), Postives = 109/171 (63.74%), Query Frame = 0


Query: 16  VGTFPYIVGISVGVLFLLTTVTIATYLCTR-------TTVPQPNRRRR-------PGERR 75
           +G   Y +G+S+G+L L+TT+T+ +Y CTR       TT P+  RR+R       PG+ R
Sbjct: 20  MGGLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESNGTLPPGQER 79

Query: 76  --------DVIVDFGPGLEDEAINEYPKILYSEKKLEGKM--ESAAASGCSICLGDYKNE 135
                   D +V    GL +E I  +PK+ Y E ++   +  ES+  S CSICL DYK  
Sbjct: 80  FDFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKM 139

Query: 136 DVLRLLPDCGHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLA 163
           D++R+LPDC H+FH  C+DPWLRL+P+CPVCRTSP+P+P  TP+A+VVP +
Sbjct: 140 DMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFS 190

[Close]

BLAST of Cp4.1LG03g00390 vs. TAIR 10
Match: AT2G46160.1 (RING/U-box superfamily protein )

HSP 1 Score: 120.2 bits (300), Expect = 1.6e-27
Identity = 65/169 (38.46%), Postives = 93/169 (55.03%), Query Frame = 0


Query: 19  FPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGERRDVIV------------- 78
           F Y + I++G L LL+TV +++Y+C R +  +       G+R   ++             
Sbjct: 35  FGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVILPRIIFVAEEDNE 94

Query: 79  -----DFGPGLEDEAINEYPKILYSEKKLEGKMESAAASG---CSICLGDYKNEDVLRLL 138
                D   GL+   IN YPK  +S+       +     G   CSICL +YK  ++LR++
Sbjct: 95  DLEAGDVVVGLDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRMM 154

Query: 139 PDCGHMFHSGCIDPWLRLNPSCPVCRTSPVP----TPLSTPLAEVVPLA 163
           P+C H FH  C+D WL+LN SCPVCR SP+P    TPLSTPL+EVVPL+
Sbjct: 155 PECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEVVPLS 203

[Close]

BLAST of Cp4.1LG03g00390 vs. TAIR 10
Match: AT5G07040.1 (RING/U-box superfamily protein )

HSP 1 Score: 104.8 bits (260), Expect = 7.0e-23
Identity = 52/149 (34.90%), Postives = 86/149 (57.72%), Query Frame = 0


Query: 21  YIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGERRDVIVDFGP-------GLED 80
           Y + I+V +L L++ + +A+Y+C R+         R     DV++D          GL+ 
Sbjct: 15  YGIAIAVSILVLISFIMLASYICIRS-----KSTGRDEATSDVVLDLPSPAAEVKLGLDR 74

Query: 81  EAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVLRLLPDCGHMFHSGCIDPWL 140
             I  YP+I+  + +   ++       CSICL DY+  + +R +P+C H FH+ C+D WL
Sbjct: 75  PVIESYPRIVLGDSR---RLPRPNNGPCSICLCDYEAREPVRCIPECNHCFHTDCVDEWL 134

Query: 141 RLNPSCPVCRTSPVPTPLSTPLAEVVPLA 163
           R + +CP+CR SP P+ L+TPL+++VPLA
Sbjct: 135 RTSATCPLCRNSPAPSRLATPLSDLVPLA 155

[Close]

BLAST of Cp4.1LG03g00390 vs. TAIR 10
Match: AT3G61550.1 (RING/U-box superfamily protein )

HSP 1 Score: 100.5 bits (249), Expect = 1.3e-21
Identity = 60/175 (34.29%), Postives = 93/175 (53.14%), Query Frame = 0


Query: 21  YIVGISVGVLFLLTTVTIATYLCTR-------TTVPQPNRRRRPGERRDVI--------- 80
           Y + I++G L L++T+ +++Y+C R        +    N      +R  ++         
Sbjct: 28  YSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASFSDRGVIVPRIIFVAED 87

Query: 81  --VDFG----PGLEDEAINEYPKILYSEKKLEGKME-------SAAASGCSICLGDYKNE 140
             ++ G     GL+   IN YPK  ++ K +   +            + CSICL +Y  E
Sbjct: 88  DDLESGNVVVGGLDHSVINSYPKFHFT-KDITAVVNGDGFHDGEGRETTCSICLCEYMEE 147

Query: 141 DVLRLLPDCGHMFHSGCIDPWLRLNPSCPVCRTSPVP----TPLSTPLAEVVPLA 163
           ++LR++P+C H FH  C+D WL+LN SCPVCR SP+P    TP STPL+EVVPL+
Sbjct: 148 EMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTPLSEVVPLS 201

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g00390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RX29	2.5e-41	52.66	RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1	[more]
Q9FG21	4.9e-37	45.03	Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 P...	[more]
O82353	2.3e-26	38.46	RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1	[more]
Q9FL42	9.9e-22	34.90	Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 P...	[more]
Q9M313	1.9e-20	34.29	RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1	[more]

BLAST of Cp4.1LG03g00390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023528902.1	2.43e-117	100.00	RING-H2 finger protein ATL70 [Cucurbita pepo subsp. pepo]	[more]
XP_022983126.1	8.13e-116	99.40	RING-H2 finger protein ATL70-like [Cucurbita maxima]	[more]
KAG6580759.1	8.13e-116	98.79	putative RING-H2 finger protein ATL71, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022935317.1	8.13e-116	98.19	RING-H2 finger protein ATL70-like [Cucurbita moschata]	[more]
KAA0043799.1	1.09e-85	76.51	RING-H2 finger protein ATL70-like [Cucumis melo var. makuwa] >TYK25334.1 RING-H2...	[more]

BLAST of Cp4.1LG03g00390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J186	3.94e-116	99.40	RING-H2 finger protein ATL70-like OS=Cucurbita maxima OX=3661 GN=LOC111481769 PE...	[more]
A0A6J1F576	3.94e-116	98.19	RING-H2 finger protein ATL70-like OS=Cucurbita moschata OX=3662 GN=LOC111442240 ...	[more]
A0A0A0LEU3	1.83e-86	77.11	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G782740 P...	[more]
A0A5A7TRH5	5.25e-86	76.51	RING-H2 finger protein ATL70-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A7N0V3V8	1.10e-62	56.97	RING-type domain-containing protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1	[more]

BLAST of Cp4.1LG03g00390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35910.1	1.8e-42	52.66	RING/U-box superfamily protein	[more]
AT5G06490.1	3.5e-38	45.03	RING/U-box superfamily protein	[more]
AT2G46160.1	1.6e-27	38.46	RING/U-box superfamily protein	[more]
AT5G07040.1	7.0e-23	34.90	RING/U-box superfamily protein	[more]
AT3G61550.1	1.3e-21	34.29	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 101..142 e-value: 1.0E-8 score: 45.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 101..143 e-value: 2.4E-14 score: 53.4
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 101..143 score: 12.917115
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 65..148 e-value: 9.7E-22 score: 78.5
None	No IPR available	PANTHER	PTHR46719:SF7	RING-H2 FINGER PROTEIN ATL71-RELATED	coord: 9..164
None	No IPR available	PANTHER	PTHR46719	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 9..164
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 101..143 e-value: 1.01197E-20 score: 78.1125
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 75..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g00390.1	Cp4.1LG03g00390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0140359	ABC-type transporter activity
molecular_function	GO:0005524	ATP binding