Cp4.1LG02g15340 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g15340
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	MAGUK p55 subfamily member 4 like
Location	Cp4.1LG02: 13461815 .. 13463363 (+)
RNA-Seq Expression	Cp4.1LG02g15340
Synteny	Cp4.1LG02g15340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCTTTCAGACTATATTAACAACCCTCCATTATCATCGTTTTTCCATAGCTTTCTTCTCTCTCTAGAAAAAAGGAACTGTAGGTGGTGGTCGGCCGGTGAGTCTGGCCGTGTTCGGTGATCGAGTGAGCGGCGGTGGGCGGCTCTGCAGGCGGAGGAGAAACAGGCATGGGTTTTTGGCATCAGATGATTCTTCCTGTACGCCGTGTTTGGCTCGCCGTTTACGGCCGTCTTAAAACTCGCAAAAATGGTTAGTCTTTTCCCCTTCTCTTAGTTTCTTCCCGTAACGTCGTCTTCCTCAATTTCAACCTCCTGCTTCGTCCGTACACTTCACTCCTTTCAGCTTTGGTCTTTGTTTATTATTATTTGATTAAAAAAAAAATCCTTATTACGTAATTAATCTCATTAATTTCTTTTCATTTATTTGTAACTTATTTAGGGATATATAATTAAATTATAAATACAACGGCTAATAACGGTTACGGTTTAGGATGAATTGATAACACAATTTAATTTACATAAAAATAATATATATATTTAAATGATTTTATAATTTTTTTTTGTTTTTGTAAAAAGAGTAAATTAATTGAAAAGTTTGAAGACACGTCAGCGATTAAATAGGTGTATGGTTGAAATTCAGTAAGTCGGTTGGAGATTAAGTTCTAATCATAATTAATTTAGTTTAAGGACATTAAAAAAGGGAAGAAAAAAGTAAGATCAAATTATTTAAAAATAAAAAAGAATTATTATTATTATTATTTATTTTTTATTTTAGTTTAAAAGCATTGTCAATGGCTTGAAAAATAGAGATTCAATATAAAATAAATAAATAAATATAATAATAAGATTTAAAAAAAATAAATAATAAAAAGACATTTCTCACCCTCCCTTTTTTCTTTTTCTAAAATTATTATTATTTTGTAAAAAAACAAAGATGCTTCCACCAAGGAATATGTCCCTATGGCTGACCTTTTTGGACCACTTCTTATTGTTGGGCATCAAAATTACTATTTTTAACTTATAATGAATTTTATTTTATAAACATTCAAATTTCTCACATTTTAATTAACAATAAAATAAATATTCAAATTTCTAAAAAGTTGTATTTGATTGGACAGATGAAGGATTACTGAACCTTAATGATGATGTGGAAACATGTGGCTATCATGACGTAAAGGTAATGTGGGAAATACTAAGGAGATCAGAAGCAGAGCAAATAACTCGTCGACATCAAGCTAAACGTAAACACAAACATTTATGGAAGGCTTTCGTATGGTCTAACCCTGCTGAAAGTACAGTTAAAATGTCAACTTTTTCGACTTTTAACCATGTTTCATAGTCAAGTCGAGTTTTAGGCCAATTTGGGTCTAAAGTGAAGCGAAGGGTTGTGAATAGAAATAATAATTGCTTCTAAAATGTTCCTAAAGAGGAGAAATCCCATTACATTGGCCATTTTGTGGTAAGATAGTGAGATGTTGACAAATGATTTAATATGGCTCTATCAATCATTTTCTTCACCATATATCATAAGATAAGAATTAAGTATTAAAA

mRNA sequence

CCCTTTCAGACTATATTAACAACCCTCCATTATCATCGTTTTTCCATAGCTTTCTTCTCTCTCTAGAAAAAAGGAACTGTAGGTGGTGGTCGGCCGGTGAGTCTGGCCGTGTTCGGTGATCGAGTGAGCGGCGGTGGGCGGCTCTGCAGGCGGAGGAGAAACAGGCATGGGTTTTTGGCATCAGATGATTCTTCCTGTACGCCGTGTTTGGCTCGCCGTTTACGGCCGTCTTAAAACTCGCAAAAATGATGAAGGATTACTGAACCTTAATGATGATGTGGAAACATGTGGCTATCATGACGTAAAGGTAATGTGGGAAATACTAAGGAGATCAGAAGCAGAGCAAATAACTCGTCGACATCAAGCTAAACGTAAACACAAACATTTATGGAAGGCTTTCGTATGGTCTAACCCTGCTGAAAGTACAGTTAAAATGTCAACTTTTTCGACTTTTAACCATGTTTCATAGTCAAGTCGAGTTTTAGGCCAATTTGGGTCTAAAGTGAAGCGAAGGGTTGTGAATAGAAATAATAATTGCTTCTAAAATGTTCCTAAAGAGGAGAAATCCCATTACATTGGCCATTTTGTGGTAAGATAGTGAGATGTTGACAAATGATTTAATATGGCTCTATCAATCATTTTCTTCACCATATATCATAAGATAAGAATTAAGTATTAAAA

Coding sequence (CDS)

ATGGGTTTTTGGCATCAGATGATTCTTCCTGTACGCCGTGTTTGGCTCGCCGTTTACGGCCGTCTTAAAACTCGCAAAAATGATGAAGGATTACTGAACCTTAATGATGATGTGGAAACATGTGGCTATCATGACGTAAAGGTAATGTGGGAAATACTAAGGAGATCAGAAGCAGAGCAAATAACTCGTCGACATCAAGCTAAACGTAAACACAAACATTTATGGAAGGCTTTCGTATGGTCTAACCCTGCTGAAAGTACAGTTAAAATGTCAACTTTTTCGACTTTTAACCATGTTTCATAG

Protein sequence

MGFWHQMILPVRRVWLAVYGRLKTRKNDEGLLNLNDDVETCGYHDVKVMWEILRRSEAEQITRRHQAKRKHKHLWKAFVWSNPAESTVKMSTFSTFNHVS

Homology

[Close]

BLAST of Cp4.1LG02g15340 vs. NCBI nr
Match: XP_022983947.1 (uncharacterized protein LOC111482415 [Cucurbita maxima])

HSP 1 Score: 150 bits (380), Expect = 5.43e-45
Identity = 72/104 (69.23%), Postives = 80/104 (76.92%), Query Frame = 0


Query: 1   MGFWHQMILPVRRVWLAVYGRLKTRKNDEGLLNLNDDVETCGYHDVKVMWEILRRSEAEQ 60
           MGFW Q+I PVRRVWLAVYGRLK RKNDEGLL L+DDVETCGY DVKVMWEIL++SEAE 
Sbjct: 1   MGFWRQIIFPVRRVWLAVYGRLKARKNDEGLLKLHDDVETCGYQDVKVMWEILKQSEAEL 60

Query: 61  ITRRHQAKRKHKHLWKAFVWSNP----AESTVKMSTFSTFNHVS 100
           I   HQ KRKHK  WK F+WSNP      ST +M  F TF+ +S
Sbjct: 61  INHHHQPKRKHKRFWKDFLWSNPNSDSTTSTTEMMPFPTFSPIS 104

[Close]

BLAST of Cp4.1LG02g15340 vs. NCBI nr
Match: XP_022934534.1 (uncharacterized protein LOC111441680 [Cucurbita moschata])

HSP 1 Score: 149 bits (376), Expect = 2.21e-44
Identity = 72/104 (69.23%), Postives = 79/104 (75.96%), Query Frame = 0


Query: 1   MGFWHQMILPVRRVWLAVYGRLKTRKNDEGLLNLNDDVETCGYHDVKVMWEILRRSEAEQ 60
           MGFW Q+I PVRRVWLAVYGRLK RKNDEGLL L+DDVETCGY DVKVMWEIL++SEAE 
Sbjct: 1   MGFWRQIIFPVRRVWLAVYGRLKARKNDEGLLKLHDDVETCGYQDVKVMWEILKQSEAEL 60

Query: 61  ITRRHQAKRKHKHLWKAFVWSNP----AESTVKMSTFSTFNHVS 100
           I   HQ +RKHK  WK F+WS P      ST KM  F TFN +S
Sbjct: 61  INHHHQTRRKHKPFWKDFLWSIPNSDSTTSTTKMIPFPTFNSIS 104

[Close]

BLAST of Cp4.1LG02g15340 vs. NCBI nr
Match: XP_004137647.1 (uncharacterized protein LOC101215661 [Cucumis sativus] >KGN58642.1 hypothetical protein Csa_002613 [Cucumis sativus])

HSP 1 Score: 147 bits (372), Expect = 8.73e-44
Identity = 73/104 (70.19%), Postives = 81/104 (77.88%), Query Frame = 0


Query: 1   MGFWHQMILPVRRVWLAVYGRLKTRKNDEGLLNLNDDVETCGYHDVKVMWEILRRSEAEQ 60
           MGFWHQMI PVRRVWLAVYGRLK R+NDEGLL L+DDVETCGY DVKVMWEILRRSEAE 
Sbjct: 1   MGFWHQMIFPVRRVWLAVYGRLKARRNDEGLLKLHDDVETCGYQDVKVMWEILRRSEAEL 60

Query: 61  ITRRHQAKRKHKHLWKAFVWSN----PAESTVKMSTFSTFNHVS 100
           I   HQ +RKHK  WKA VWSN     + +  KM+ F TF+ +S
Sbjct: 61  INH-HQMRRKHKPFWKALVWSNHNSNSSTNIPKMTNFPTFSPIS 103

[Close]

BLAST of Cp4.1LG02g15340 vs. NCBI nr
Match: KAG7018111.1 (hypothetical protein SDJN02_19979 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 145 bits (367), Expect = 5.20e-43
Identity = 70/104 (67.31%), Postives = 79/104 (75.96%), Query Frame = 0


Query: 1   MGFWHQMILPVRRVWLAVYGRLKTRKNDEGLLNLNDDVETCGYHDVKVMWEILRRSEAEQ 60
           MGFW Q+I PVRRVWLAVYGRLK RKNDEG+L L+DDVETCGY DVKVMWEIL++SEAE 
Sbjct: 1   MGFWRQIIFPVRRVWLAVYGRLKARKNDEGVLKLHDDVETCGYQDVKVMWEILKQSEAEL 60

Query: 61  ITRRHQAKRKHKHLWKAFVWSNP----AESTVKMSTFSTFNHVS 100
           I    Q +RKHK  WK F+WSNP      ST KM  F TF+ +S
Sbjct: 61  IHHHQQTRRKHKPFWKDFLWSNPNSDSTTSTTKMMPFPTFSPIS 104

[Close]

BLAST of Cp4.1LG02g15340 vs. NCBI nr
Match: PSS07590.1 (Nuclear pore complex protein [Actinidia chinensis var. chinensis])

HSP 1 Score: 116 bits (290), Expect = 1.90e-31
Identity = 51/92 (55.43%), Postives = 69/92 (75.00%), Query Frame = 0


Query: 1  MGFWHQMILPVRRVWLAVYGRLKTRKNDEGLLNLNDDVETCGYHDVKVMWEILRRSEAEQ 60
          M +WH+M+ PVRRVW+AV  R+K RKN  GLL L +D++TCGY DV+VMWE+LRRS++E+
Sbjct: 1  MNWWHKMVFPVRRVWVAVAARVKARKNGGGLLKLRNDIQTCGYEDVQVMWEMLRRSDSEK 60

Query: 61 ITRRHQAKRKHKHLWKAFVWSNPAESTVKMST 92
              H+ KRKH+  W+ FVWSN + +T   ST
Sbjct: 61 ----HRPKRKHRPFWRVFVWSNHSAATSSFST 88

[Close]

BLAST of Cp4.1LG02g15340 vs. ExPASy TrEMBL
Match: A0A6J1J0R9 (uncharacterized protein LOC111482415 OS=Cucurbita maxima OX=3661 GN=LOC111482415 PE=4 SV=1)

HSP 1 Score: 150 bits (380), Expect = 2.63e-45
Identity = 72/104 (69.23%), Postives = 80/104 (76.92%), Query Frame = 0


Query: 1   MGFWHQMILPVRRVWLAVYGRLKTRKNDEGLLNLNDDVETCGYHDVKVMWEILRRSEAEQ 60
           MGFW Q+I PVRRVWLAVYGRLK RKNDEGLL L+DDVETCGY DVKVMWEIL++SEAE 
Sbjct: 1   MGFWRQIIFPVRRVWLAVYGRLKARKNDEGLLKLHDDVETCGYQDVKVMWEILKQSEAEL 60

Query: 61  ITRRHQAKRKHKHLWKAFVWSNP----AESTVKMSTFSTFNHVS 100
           I   HQ KRKHK  WK F+WSNP      ST +M  F TF+ +S
Sbjct: 61  INHHHQPKRKHKRFWKDFLWSNPNSDSTTSTTEMMPFPTFSPIS 104

[Close]

BLAST of Cp4.1LG02g15340 vs. ExPASy TrEMBL
Match: A0A6J1F2W0 (uncharacterized protein LOC111441680 OS=Cucurbita moschata OX=3662 GN=LOC111441680 PE=4 SV=1)

HSP 1 Score: 149 bits (376), Expect = 1.07e-44
Identity = 72/104 (69.23%), Postives = 79/104 (75.96%), Query Frame = 0


Query: 1   MGFWHQMILPVRRVWLAVYGRLKTRKNDEGLLNLNDDVETCGYHDVKVMWEILRRSEAEQ 60
           MGFW Q+I PVRRVWLAVYGRLK RKNDEGLL L+DDVETCGY DVKVMWEIL++SEAE 
Sbjct: 1   MGFWRQIIFPVRRVWLAVYGRLKARKNDEGLLKLHDDVETCGYQDVKVMWEILKQSEAEL 60

Query: 61  ITRRHQAKRKHKHLWKAFVWSNP----AESTVKMSTFSTFNHVS 100
           I   HQ +RKHK  WK F+WS P      ST KM  F TFN +S
Sbjct: 61  INHHHQTRRKHKPFWKDFLWSIPNSDSTTSTTKMIPFPTFNSIS 104

[Close]

BLAST of Cp4.1LG02g15340 vs. ExPASy TrEMBL
Match: A0A0A0LD54 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710210 PE=4 SV=1)

HSP 1 Score: 147 bits (372), Expect = 4.22e-44
Identity = 73/104 (70.19%), Postives = 81/104 (77.88%), Query Frame = 0


Query: 1   MGFWHQMILPVRRVWLAVYGRLKTRKNDEGLLNLNDDVETCGYHDVKVMWEILRRSEAEQ 60
           MGFWHQMI PVRRVWLAVYGRLK R+NDEGLL L+DDVETCGY DVKVMWEILRRSEAE 
Sbjct: 1   MGFWHQMIFPVRRVWLAVYGRLKARRNDEGLLKLHDDVETCGYQDVKVMWEILRRSEAEL 60

Query: 61  ITRRHQAKRKHKHLWKAFVWSN----PAESTVKMSTFSTFNHVS 100
           I   HQ +RKHK  WKA VWSN     + +  KM+ F TF+ +S
Sbjct: 61  INH-HQMRRKHKPFWKALVWSNHNSNSSTNIPKMTNFPTFSPIS 103

[Close]

BLAST of Cp4.1LG02g15340 vs. ExPASy TrEMBL
Match: A0A2R6QG38 (Nuclear pore complex protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc17940 PE=4 SV=1)

HSP 1 Score: 116 bits (290), Expect = 9.21e-32
Identity = 51/92 (55.43%), Postives = 69/92 (75.00%), Query Frame = 0


Query: 1  MGFWHQMILPVRRVWLAVYGRLKTRKNDEGLLNLNDDVETCGYHDVKVMWEILRRSEAEQ 60
          M +WH+M+ PVRRVW+AV  R+K RKN  GLL L +D++TCGY DV+VMWE+LRRS++E+
Sbjct: 1  MNWWHKMVFPVRRVWVAVAARVKARKNGGGLLKLRNDIQTCGYEDVQVMWEMLRRSDSEK 60

Query: 61 ITRRHQAKRKHKHLWKAFVWSNPAESTVKMST 92
              H+ KRKH+  W+ FVWSN + +T   ST
Sbjct: 61 ----HRPKRKHRPFWRVFVWSNHSAATSSFST 88

[Close]

BLAST of Cp4.1LG02g15340 vs. ExPASy TrEMBL
Match: A0A5A7UWX2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001420 PE=4 SV=1)

HSP 1 Score: 115 bits (289), Expect = 1.51e-31
Identity = 54/94 (57.45%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 1  MGFWHQMILPVRRVWLAVYGRLKTRKNDEGLLNLNDDVETCGYHDVKVMWEILRRSEAEQ 60
          M  WH+MI PVRRVWLAV  R++ RK   GLL L+DDVETCGY DVKVMWE+LRRSE+E 
Sbjct: 1  MELWHKMIFPVRRVWLAVSSRVRARKTGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60

Query: 61 ITRRHQAKRKHKHLWKAFVWSNPAESTVKMSTFS 94
          ++  HQ KRK +  W+  VWSN A +    S+++
Sbjct: 61 VS--HQPKRKQRPFWRVSVWSNHAAAAAAASSYT 92

[Close]

BLAST of Cp4.1LG02g15340 vs. TAIR 10
Match: AT5G43150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 51.2 bits (121), Expect = 5.5e-07
Identity = 24/74 (32.43%), Postives = 41/74 (55.41%), Query Frame = 0


Query: 3  FWHQMILPVRRVWLAVYGRLKTRKNDEGLLNLNDDVETCGYHDVKVMWEILRRSE-AEQI 62
          +W+ M  P RR+W     R+  R +  GLL L  DV +C Y D+ +MW +L ++E   ++
Sbjct: 9  WWNTMAFPTRRIWNRFTVRVGFRHS--GLLRLEHDVSSCEYEDIHIMWNLLHKNEDLTRV 68

Query: 63 TRRHQAKRKHKHLW 76
            + Q +++ K  W
Sbjct: 69 PIQQQQQQRKKPCW 80

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g15340 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG02g15340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022983947.1	5.43e-45	69.23	uncharacterized protein LOC111482415 [Cucurbita maxima]	[more]
XP_022934534.1	2.21e-44	69.23	uncharacterized protein LOC111441680 [Cucurbita moschata]	[more]
XP_004137647.1	8.73e-44	70.19	uncharacterized protein LOC101215661 [Cucumis sativus] >KGN58642.1 hypothetical ...	[more]
KAG7018111.1	5.20e-43	67.31	hypothetical protein SDJN02_19979 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
PSS07590.1	1.90e-31	55.43	Nuclear pore complex protein [Actinidia chinensis var. chinensis]	[more]

BLAST of Cp4.1LG02g15340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J0R9	2.63e-45	69.23	uncharacterized protein LOC111482415 OS=Cucurbita maxima OX=3661 GN=LOC111482415...	[more]
A0A6J1F2W0	1.07e-44	69.23	uncharacterized protein LOC111441680 OS=Cucurbita moschata OX=3662 GN=LOC1114416...	[more]
A0A0A0LD54	4.22e-44	70.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710210 PE=4 SV=1	[more]
A0A2R6QG38	9.21e-32	55.43	Nuclear pore complex protein OS=Actinidia chinensis var. chinensis OX=1590841 GN...	[more]
A0A5A7UWX2	1.51e-31	57.45	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Cp4.1LG02g15340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43150.1	5.5e-07	32.43	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33181	OS01G0778500 PROTEIN	coord: 3..90
None	No IPR available	PANTHER	PTHR33181:SF19	OSJNBA0041A02.21-LIKE PROTEIN	coord: 3..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g15340.1	Cp4.1LG02g15340.1	mRNA