Cp4.1LG02g14500 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g14500
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	photosystem I reaction center subunit VI, chloroplastic-like
Location	Cp4.1LG02: 13888987 .. 13891088 (-)
RNA-Seq Expression	Cp4.1LG02g14500
Synteny	Cp4.1LG02g14500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATATCAACAAGGATAGCCTTATCCACTTCCATCCAACGTGGAACCTCCTAAATGATACTCAAAATTCTCTTCCAAGATCCCATTTTGCCACGTGTCAAAACAAGATCCAATCACACGCCATTTGAACCCTCCACCTCCTATCTCAACCTGGCAACTCCAAGTTCCTTCCTTTTCCAACCAAGAAGGCAACAATGGCTTCCTTAGCAACACTAGCCGCCGTTCAGCCGGTTGCCGTAAAGGGTCTTGGTGGAAGCTCCCTTGCCGGGACCAAGCTGCCTCTCAGGCCCTCTCGCCAGACCTTGACGCCCAAGAACTTCAAGTACCAAAATCAATCACCAAAAATGCTTTTATTATTAGTTTGGAACTGTATGAAACTTGTGGGGTTTTTTTGTTTTCAGGGCTGGTGCTGTGGTGGCTAAGTATGGTGACAAAAGCGTTTACTTTAATTTAGAGGACTTGGGTAACACTACTGGACAGTGGGATTTGTATGGATCTGATGCTCCTTCACCTTACAATTCTCTTCAGGTTTGTGATTCATTGCTTTGCTTTAATGAATTTGAAGAATGGATCAGAACAGAACAGACTAATTCTTAGCTTTTTGGATTGAACTTGCTATTGACTTATTTTGGTACATTTTATAGAGCAAATTCTTTGAGACCTTTGCTGCTCCATTCACCAAGAGAGGACTCTTGCTCAAGTTCTTGCTACTTGGTGGTGGTTCCACTTTAGCTTATTTCAGTGCCACTGCCCCAGATGACGTTCTTCCAATCAAGAAAGGACCTCAACTTCCACCCAAACTCGGGCCGCGTGGCAAGATCTAATTCGCTTTCGAATCGGGTTTCTGTTGTATGTAAATTTTCTCTCTTAACTCTCCTACCAGCTATGTTTCAAAGATACCATTTGGGAGTGTTATTTGAGCCATTGTTATTATGTGATCAATGTGGTTTTGCCAGTTTGCCCTGCAGAAGAAACAAATTCAAAATACTCCAAATACTCCAAAACCAATTACTTTTATTCATCCTTCATATTTACAACAGGAATGAATTGAATGGATTTGGTAATTACAGCTCTAAAGAGAAATTCAGTCAAAAGGAGGTTAAGCTTAACCGTGTTTTTCTGCTGTGCTGTCTCCCCCTTCTCTAAAACCTTATGCTAGCTTTTTGTTCTTATTTTTCGTCTTCCCTTATGAACTCGAGTCAATGTCGTGCCACGGGGCTCTTCGGACCGCCGCTGATGTTCTCGAGGTACGAGACCAACTTATTGTTAGTCACTATGTTTTGAAGCTTCTGCACAGGCTTCAGTTCACCTTCTGCGGATAAGTTGTCTGAATTCCCTGTTGGTGATTCCTTCTTTGTCTCATTATCAGAAATATCAGGACCCCAATTCATGAAATCCAATAATGTCATTGAAGTAAGTGTCTCGGAAGCATTTTGTGTCTCTTCTCCTGGTGAAGGCTTATCCACCCCCGACGATACCGGGGTTTCCCTTGAAGGGCTCTTACTCGAGGGCTGTGTCGGATTTTGAGCGAGATAATCCGCGTACAGTACATCCTCAATCCTTGACATCACAGTGAAGGCTAAGCTTTCAAGGATTCTAGAGTAACTCTCTAGAACAGCCTGTCCAATATCCTAAACATCCAAAGAACCAACATAACATTAGAGAGTGCTGCAAACAGAAGTTTTCTAGGATTCCATCCACCCTTTTCAAGACATGAAACATAGTACTTTCCAAAAACAAAAACAAAAATGTTGTGTACCCTATTGTATTGAATTTTGCTAATGTCTAATGCTGATTGAGGAGTGCCTGGGAAACGATGCTTGAGGATGATTAAAATTGTTTCCGCTCGCTCCTCGAAAAGCTCTCGCTTCTCCAAGCTTACAGCCGAGCCCCAAGCAGATTTTCCATCTTTCTGGTTCATCTTCCTCTTCCATATCACAATAGAAGCTTCAATTCTATCCTTGAGATCTAGGATCTTGTGCTCTGAAGATAAGTCCAATGTAGACAGAAATTGATCCGGGTCGAAGAATTCGACCGTTATGTTTCTGTACACAGAGTCTCCAAGGCTTTCCCTCCCATTCTGCAAACGAATATTCAGTCACGA

mRNA sequence

CATATCAACAAGGATAGCCTTATCCACTTCCATCCAACGTGGAACCTCCTAAATGATACTCAAAATTCTCTTCCAAGATCCCATTTTGCCACGTGTCAAAACAAGATCCAATCACACGCCATTTGAACCCTCCACCTCCTATCTCAACCTGGCAACTCCAAGTTCCTTCCTTTTCCAACCAAGAAGGCAACAATGGCTTCCTTAGCAACACTAGCCGCCGTTCAGCCGGTTGCCGTAAAGGGTCTTGGTGGAAGCTCCCTTGCCGGGACCAAGCTGCCTCTCAGGCCCTCTCGCCAGACCTTGACGCCCAAGAACTTCAAGGCTGGTGCTGTGGTGGCTAAGTATGGTGACAAAAGCGTTTACTTTAATTTAGAGGACTTGGGTAACACTACTGGACAGTGGGATTTGTATGGATCTGATGCTCCTTCACCTTACAATTCTCTTCAGAGCAAATTCTTTGAGACCTTTGCTGCTCCATTCACCAAGAGAGGACTCTTGCTCAAGTTCTTGCTACTTGGTGGTGGTTCCACTTTAGCTTATTTCAGTGCCACTGCCCCAGATGACGTTCTTCCAATCAAGAAAGGACCTCAACTTCCACCCAAACTCGGGCCGCGTGGCAAGATCTAATTCGCTTTCGAATCGGGTTTCTGTTGTATGTAAATTTTCTCTCTTAACTCTCCTACCAGCTATGTTTCAAAGATACCATTTGGGAGTGTTATTTGAGCCATTGTTATTATGTGATCAATGTGGTTTTGCCAGTTTGCCCTGCAGAAGAAACAAATTCAAAATACTCCAAATACTCCAAAACCAATTACTTTTATTCATCCTTCATATTTACAACAGGAATGAATTGAATGGATTTGGTAATTACAGCTCTAAAGAGAAATTCAGTCAAAAGGAGGTTAAGCTTAACCGTGTTTTTCTGCTGTGCTGTCTCCCCCTTCTCTAAAACCTTATGCTAGCTTTTTGTTCTTATTTTTCGTCTTCCCTTATGAACTCGAGTCAATGTCGTGCCACGGGGCTCTTCGGACCGCCGCTGATGTTCTCGAGGTACGAGACCAACTTATTGTTAGTCACTATGTTTTGAAGCTTCTGCACAGGCTTCAGTTCACCTTCTGCGGATAAGTTGTCTGAATTCCCTGTTGGTGATTCCTTCTTTGTCTCATTATCAGAAATATCAGGACCCCAATTCATGAAATCCAATAATGTCATTGAAGTAAGTGTCTCGGAAGCATTTTGTGTCTCTTCTCCTGGTGAAGGCTTATCCACCCCCGACGATACCGGGGTTTCCCTTGAAGGGCTCTTACTCGAGGGCTGTGTCGGATTTTGAGCGAGATAATCCGCGTACAGTACATCCTCAATCCTTGACATCACAGTGAAGGCTAAGCTTTCAAGGATTCTAGAGTAACTCTCTAGAACAGCCTGTCCAATATCCTAAACATCCAAAGAACCAACATAACATTAGAGAGTGCTGCAAACAGAAGTTTTCTAGGATTCCATCCACCCTTTTCAAGACATGAAACATAGTACTTTCCAAAAACAAAAACAAAAATGTTGTGTACCCTATTGTATTGAATTTTGCTAATGTCTAATGCTGATTGAGGAGTGCCTGGGAAACGATGCTTGAGGATGATTAAAATTGTTTCCGCTCGCTCCTCGAAAAGCTCTCGCTTCTCCAAGCTTACAGCCGAGCCCCAAGCAGATTTTCCATCTTTCTGGTTCATCTTCCTCTTCCATATCACAATAGAAGCTTCAATTCTATCCTTGAGATCTAGGATCTTGTGCTCTGAAGATAAGTCCAATGTAGACAGAAATTGATCCGGGTCGAAGAATTCGACCGTTATGTTTCTGTACACAGAGTCTCCAAGGCTTTCCCTCCCATTCTGCAAACGAATATTCAGTCACGA

Coding sequence (CDS)

ATGGCTTCCTTAGCAACACTAGCCGCCGTTCAGCCGGTTGCCGTAAAGGGTCTTGGTGGAAGCTCCCTTGCCGGGACCAAGCTGCCTCTCAGGCCCTCTCGCCAGACCTTGACGCCCAAGAACTTCAAGGCTGGTGCTGTGGTGGCTAAGTATGGTGACAAAAGCGTTTACTTTAATTTAGAGGACTTGGGTAACACTACTGGACAGTGGGATTTGTATGGATCTGATGCTCCTTCACCTTACAATTCTCTTCAGAGCAAATTCTTTGAGACCTTTGCTGCTCCATTCACCAAGAGAGGACTCTTGCTCAAGTTCTTGCTACTTGGTGGTGGTTCCACTTTAGCTTATTTCAGTGCCACTGCCCCAGATGACGTTCTTCCAATCAAGAAAGGACCTCAACTTCCACCCAAACTCGGGCCGCGTGGCAAGATCTAA

Protein sequence

MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFNLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

Homology

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BLAST of Cp4.1LG02g14500 vs. ExPASy Swiss-Prot
Match: P22179 (Photosystem I reaction center subunit VI, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSAH PE=1 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 2.7e-60
Identity = 113/144 (78.47%), Postives = 127/144 (88.19%), Query Frame = 0


Query: 1   MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFNL 60
           MASLATLAAVQP  +KGL GSS+AGTKL ++P+RQ+    N ++GA+VAKYGDKSVYF+L
Sbjct: 1   MASLATLAAVQPTTLKGLAGSSIAGTKLHIKPARQSFKLNNVRSGAIVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSAT 120
           ED+ NTTGQWD+YGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFL+LGGGS L Y SA 
Sbjct: 61  EDIANTTGQWDVYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSAN 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           AP DVLPI +GPQ PPKLGPRGKI
Sbjct: 121 APQDVLPITRGPQQPPKLGPRGKI 144

[Close]

BLAST of Cp4.1LG02g14500 vs. ExPASy Swiss-Prot
Match: Q9SUI6 (Photosystem I reaction center subunit VI-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAH2 PE=2 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 2.3e-59
Identity = 116/145 (80.00%), Postives = 128/145 (88.28%), Query Frame = 0


Query: 1   MASLATLAAVQP-VAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFN 60
           MAS AT+AAVQP  AVKGLGGSSLAG KL ++PSRQ+   K+ +AGAVVAKYGDKSVYF+
Sbjct: 1   MASFATIAAVQPSAAVKGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVAKYGDKSVYFD 60

Query: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSA 120
           LEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGGS L Y SA
Sbjct: 61  LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 121 TAPDDVLPIKKGPQLPPKLGPRGKI 145
            +  DVLPIK+GPQ PPKLGPRGK+
Sbjct: 121 NSTGDVLPIKRGPQEPPKLGPRGKL 145

[Close]

BLAST of Cp4.1LG02g14500 vs. ExPASy Swiss-Prot
Match: O04006 (Photosystem I reaction center subunit VI, chloroplastic OS=Brassica campestris OX=3711 GN=PSAH PE=2 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 3.0e-59
Identity = 116/145 (80.00%), Postives = 128/145 (88.28%), Query Frame = 0


Query: 1   MASLATLAAVQPV-AVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFN 60
           MAS AT+AAVQP  AVKGLGGSSL G KL ++PSRQ+  PK+ +AGAVVAKYGDKSVYF+
Sbjct: 1   MASFATIAAVQPYSAVKGLGGSSLTGAKLFIKPSRQSFKPKSTRAGAVVAKYGDKSVYFD 60

Query: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSA 120
           LEDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGGS L Y SA
Sbjct: 61  LEDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 121 TAPDDVLPIKKGPQLPPKLGPRGKI 145
           ++  DVLPIK+GPQ  PKLGPRGK+
Sbjct: 121 SSTGDVLPIKRGPQEKPKLGPRGKL 145

[Close]

BLAST of Cp4.1LG02g14500 vs. ExPASy Swiss-Prot
Match: Q9SUI7 (Photosystem I reaction center subunit VI-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAH1 PE=2 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 8.7e-59
Identity = 113/145 (77.93%), Postives = 128/145 (88.28%), Query Frame = 0


Query: 1   MASLATLAAVQP-VAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFN 60
           MASLAT+AAV+P  A+KGLGGSSLAG KL ++PSR +  PK+ +A  VVAKYGDKSVYF+
Sbjct: 1   MASLATVAAVKPSAAIKGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVAKYGDKSVYFD 60

Query: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSA 120
           LEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGGS L Y SA
Sbjct: 61  LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 121 TAPDDVLPIKKGPQLPPKLGPRGKI 145
           T+  +VLPIK+GPQ PPKLGPRGK+
Sbjct: 121 TSTGEVLPIKRGPQEPPKLGPRGKL 145

[Close]

BLAST of Cp4.1LG02g14500 vs. ExPASy Swiss-Prot
Match: A2Y7D9 (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=PSAH PE=2 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.4e-53
Identity = 109/143 (76.22%), Postives = 123/143 (86.01%), Query Frame = 0


Query: 4   LATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTL--TPKNFKAGAVVAKYGDKSVYFNLE 63
           +A+L AVQPVAVKGL GSS++G KL +RPS + L  T +  +A AVVAKYG+KSVYF+LE
Sbjct: 1   MASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRA-AVVAKYGEKSVYFDLE 60

Query: 64  DLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSATA 123
           D+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKRGLLLKFLLLGGGS +AY SA+A
Sbjct: 61  DIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVSASA 120

Query: 124 PDDVLPIKKGPQLPPKLGPRGKI 145
             D+LPIKKGPQLPP  GPRGKI
Sbjct: 121 SPDLLPIKKGPQLPPTPGPRGKI 142

[Close]

BLAST of Cp4.1LG02g14500 vs. NCBI nr
Match: XP_023523631.1 (photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 286 bits (732), Expect = 2.54e-97
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFNL 60
           MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFNL
Sbjct: 1   MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFNL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 144
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Cp4.1LG02g14500 vs. NCBI nr
Match: XP_022998077.1 (photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita maxima] >KAG6606763.1 Photosystem I reaction center subunit VI, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036477.1 Photosystem I reaction center subunit VI, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 284 bits (727), Expect = 1.47e-96
Identity = 143/144 (99.31%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFNL 60
           MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYF+L
Sbjct: 1   MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 144
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Cp4.1LG02g14500 vs. NCBI nr
Match: XP_022949150.1 (photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 283 bits (723), Expect = 6.00e-96
Identity = 142/144 (98.61%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFNL 60
           MASL TLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYF+L
Sbjct: 1   MASLTTLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 144
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Cp4.1LG02g14500 vs. NCBI nr
Match: XP_038902740.1 (photosystem I reaction center subunit VI, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 277 bits (709), Expect = 8.19e-94
Identity = 138/144 (95.83%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFNL 60
           MASLATLAAVQPV VKGLGGSSLAGTKLPLRPSRQ+L+PKN+KAGAVVAKYGDKSVYF+L
Sbjct: 1   MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLSPKNYKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGG+TLAYFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 144
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Cp4.1LG02g14500 vs. NCBI nr
Match: XP_011651500.1 (photosystem I reaction center subunit VI, chloroplastic [Cucumis sativus] >KGN58074.1 hypothetical protein Csa_023410 [Cucumis sativus])

HSP 1 Score: 276 bits (705), Expect = 3.34e-93
Identity = 138/144 (95.83%), Postives = 140/144 (97.22%), Query Frame = 0


Query: 1   MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFNL 60
           MASLATLAAVQPV VKGLGGSSLAG KLPLRPSRQT  PKNFKAGAVVAKYGDKSVYF+L
Sbjct: 1   MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQTFRPKNFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGG+TLAYFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 144
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Cp4.1LG02g14500 vs. ExPASy TrEMBL
Match: A0A6J1K6V8 (photosystem I reaction center subunit VI, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111492832 PE=3 SV=1)

HSP 1 Score: 284 bits (727), Expect = 7.13e-97
Identity = 143/144 (99.31%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFNL 60
           MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYF+L
Sbjct: 1   MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 144
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Cp4.1LG02g14500 vs. ExPASy TrEMBL
Match: A0A6J1GBZ1 (photosystem I reaction center subunit VI, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111452588 PE=3 SV=1)

HSP 1 Score: 283 bits (723), Expect = 2.91e-96
Identity = 142/144 (98.61%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFNL 60
           MASL TLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYF+L
Sbjct: 1   MASLTTLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 144
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Cp4.1LG02g14500 vs. ExPASy TrEMBL
Match: A0A0A0LAW4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G483830 PE=3 SV=1)

HSP 1 Score: 276 bits (705), Expect = 1.62e-93
Identity = 138/144 (95.83%), Postives = 140/144 (97.22%), Query Frame = 0


Query: 1   MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFNL 60
           MASLATLAAVQPV VKGLGGSSLAG KLPLRPSRQT  PKNFKAGAVVAKYGDKSVYF+L
Sbjct: 1   MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQTFRPKNFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGG+TLAYFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 144
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Cp4.1LG02g14500 vs. ExPASy TrEMBL
Match: A0A6J1IVS0 (photosystem I reaction center subunit VI, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111479056 PE=3 SV=1)

HSP 1 Score: 273 bits (698), Expect = 1.89e-92
Identity = 136/144 (94.44%), Postives = 141/144 (97.92%), Query Frame = 0


Query: 1   MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFNL 60
           MASLATLAAVQPV VKGLGGSSLAGTKLPLRPSRQ+  PK+FKAGAVVAKYGDKSVYF+L
Sbjct: 1   MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKSFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGG+TLAY+SAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 144
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Cp4.1LG02g14500 vs. ExPASy TrEMBL
Match: A0A6J1GUS6 (photosystem I reaction center subunit VI, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111457635 PE=3 SV=1)

HSP 1 Score: 273 bits (698), Expect = 1.89e-92
Identity = 136/144 (94.44%), Postives = 141/144 (97.92%), Query Frame = 0


Query: 1   MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFNL 60
           MASLATLAAVQPV VKGLGGSSLAGTKLPLRPSRQ+  PK+FKAGAVVAKYGDKSVYF+L
Sbjct: 1   MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKSFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGG+TLAY+SAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 144
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Cp4.1LG02g14500 vs. TAIR 10
Match: AT1G52230.1 (photosystem I subunit H2 )

HSP 1 Score: 229.6 bits (584), Expect = 1.6e-60
Identity = 116/145 (80.00%), Postives = 128/145 (88.28%), Query Frame = 0


Query: 1   MASLATLAAVQP-VAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFN 60
           MAS AT+AAVQP  AVKGLGGSSLAG KL ++PSRQ+   K+ +AGAVVAKYGDKSVYF+
Sbjct: 1   MASFATIAAVQPSAAVKGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVAKYGDKSVYFD 60

Query: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSA 120
           LEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGGS L Y SA
Sbjct: 61  LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 121 TAPDDVLPIKKGPQLPPKLGPRGKI 145
            +  DVLPIK+GPQ PPKLGPRGK+
Sbjct: 121 NSTGDVLPIKRGPQEPPKLGPRGKL 145

[Close]

BLAST of Cp4.1LG02g14500 vs. TAIR 10
Match: AT3G16140.1 (photosystem I subunit H-1 )

HSP 1 Score: 227.6 bits (579), Expect = 6.2e-60
Identity = 113/145 (77.93%), Postives = 128/145 (88.28%), Query Frame = 0


Query: 1   MASLATLAAVQP-VAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFN 60
           MASLAT+AAV+P  A+KGLGGSSLAG KL ++PSR +  PK+ +A  VVAKYGDKSVYF+
Sbjct: 1   MASLATVAAVKPSAAIKGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVAKYGDKSVYFD 60

Query: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSA 120
           LEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGGS L Y SA
Sbjct: 61  LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 121 TAPDDVLPIKKGPQLPPKLGPRGKI 145
           T+  +VLPIK+GPQ PPKLGPRGK+
Sbjct: 121 TSTGEVLPIKRGPQEPPKLGPRGKL 145

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g14500 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P22179	2.7e-60	78.47	Photosystem I reaction center subunit VI, chloroplastic OS=Spinacia oleracea OX=...	[more]
Q9SUI6	2.3e-59	80.00	Photosystem I reaction center subunit VI-2, chloroplastic OS=Arabidopsis thalian...	[more]
O04006	3.0e-59	80.00	Photosystem I reaction center subunit VI, chloroplastic OS=Brassica campestris O...	[more]
Q9SUI7	8.7e-59	77.93	Photosystem I reaction center subunit VI-1, chloroplastic OS=Arabidopsis thalian...	[more]
A2Y7D9	1.4e-53	76.22	Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. i...	[more]

BLAST of Cp4.1LG02g14500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023523631.1	2.54e-97	100.00	photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita pepo sub...	[more]
XP_022998077.1	1.47e-96	99.31	photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita maxima] ...	[more]
XP_022949150.1	6.00e-96	98.61	photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita moschata...	[more]
XP_038902740.1	8.19e-94	95.83	photosystem I reaction center subunit VI, chloroplastic-like [Benincasa hispida]	[more]
XP_011651500.1	3.34e-93	95.83	photosystem I reaction center subunit VI, chloroplastic [Cucumis sativus] >KGN58...	[more]

BLAST of Cp4.1LG02g14500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K6V8	7.13e-97	99.31	photosystem I reaction center subunit VI, chloroplastic-like OS=Cucurbita maxima...	[more]
A0A6J1GBZ1	2.91e-96	98.61	photosystem I reaction center subunit VI, chloroplastic-like OS=Cucurbita moscha...	[more]
A0A0A0LAW4	1.62e-93	95.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G483830 PE=3 SV=1	[more]
A0A6J1IVS0	1.89e-92	94.44	photosystem I reaction center subunit VI, chloroplastic-like OS=Cucurbita maxima...	[more]
A0A6J1GUS6	1.89e-92	94.44	photosystem I reaction center subunit VI, chloroplastic-like OS=Cucurbita moscha...	[more]

BLAST of Cp4.1LG02g14500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52230.1	1.6e-60	80.00	photosystem I subunit H2	[more]
AT3G16140.1	6.2e-60	77.93	photosystem I subunit H-1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004928	Photosystem I PsaH, reaction centre subunit VI	PFAM	PF03244	PSI_PsaH	coord: 7..144 e-value: 1.3E-70 score: 235.4
IPR004928	Photosystem I PsaH, reaction centre subunit VI	PANTHER	PTHR34787	PHOTOSYSTEM I REACTION CENTER SUBUNIT VI-2, CHLOROPLASTIC	coord: 1..144
None	No IPR available	GENE3D	1.20.5.220		coord: 98..120 e-value: 1.6E-12 score: 48.8
None	No IPR available	PANTHER	PTHR34787:SF6	PHOTOSYSTEM I REACTION CENTER SUBUNIT VI-1, CHLOROPLASTIC-LIKE	coord: 1..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g14500.1	Cp4.1LG02g14500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009522	photosystem I