Cp4.1LG02g14430 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCAGGCCCATAACCTAAGCCCATTGAGTTTCTGGTTCGTGCTTCGAATTAGGGCTTAATATAAATTTAGGGAACTCCCTCTTCTTCTTCGCGCGCCCCATTTTGCCCATCCGAGTTTCTGAGACAAACCCTAAAGTTAATCAGGTCTCTGCATTTCTCTCAACGATTTCTTTTGAATGCATTATTTAAATCTCGAAACAATAACATTCATATGTATGTTTTACTCTTACTAAACTAACTTCGAAGATATTGTTTCATCGTGTTGCAGGGCGAGAAGAAGATCATGGCGGCGGTTCCAGGACAATTGATTTGGGAGATTGTGAAGAGGAACAACTCGTTTTTGGTCAAGGAGTTTGGGAGGGGAACAGCCGGCGTTCAGTTCAGCAAAGAGTCTAACAACTTATACAATCTGAACTCCTACAAACATTCTGGTAAGTCATCTCAAATTCTCTGATGTATTGATTTTTTTTTTTTTTTTCATGTCAAGAAAAATGCTAGTGGATTAAGTTTTGGGGGTTTTATTGAAATGTCGGAACGATCCGGAGACGAGATCATAGGTATATTATATCGTTGTTATTTTGAGGTTTGTGTTTGACTTTTCTTTTGGAGCAAAGGAATTATGTACAGGAAATTTAAATAGTTAGTGTTATCTGATTGGATTCTGTCTGCTAAGGACCTAAGAAGATGCTTGGTTTATGATATGGAAACTGGATGCTCTTATCAATTGGTGATTATATTCTAGATAAATACGTGTTCGTGCTTCATACATTCTGGATTCGGTGGGAGGGAACGTAAAACTGATGTTTGTGAAATTGTTTTTACTATCATCCCTGTTTCTTCTCTTTAGATTTATTTATTTTAATTATTTTTTGATTGAAGATAATATTGCAGATAGTGAGTTCTGTATATGCATAGAGATTAAATAAGATTCTTGTGTTTTAGGTTTGGCCAACAAGAAAACTGTTACGATTCAACCTGGAGGCAAAGACCAATCCATTTTGTTTGCAACAACTAAGAGCAAGAAACAGAACAAGCCTTCTTCATTGCTTCACAAATCATTAATGAAGAAAGAGTTCCGTAGGATGGCCAAAGCTGTAACAAATCAGGTAATTTTAAAGGTTCAGGCATTCAACGTCTTATTTCGGCTCCCACCCCCCCTTATCGCCGGCAATAAAACTACAATTGTGGCATATACCTTAGGCTAAGTAATATGACTATCTTTCGAGTACTTTTGCTGCGAATTTACTTTGAATGGTTGAAACCCTTCTGTCCCAATGATATGCAGGTGGGAGATAACTACTACAGGCCAGATCTGAAGAGGGATGCTCTTGCAAGATTGAGTGCTGTGAACAGGAGCCTTAAGGTGGCCAAGTCTGGCGTAAAGAAGAGGAACAGGCAAGCGTTGAAATCACGTGGAAGGAAGTGAGAATTGAGCTAGTAGAGAGAAGAGATTGTTGCATTTTTCAATTGTGTTTTCTTTTGGAATGCCAACTTTGTAGTTCGGTTTGGAATCTGAAGGAGTAGTAGTAGTCTGGCAATAGATGTTTTGCTATGTTTTGCGTTACTATAATGGTTATTTCATGTTGAGGTTAACTCTTTGCGGGTAATCTTAAGACTTTGTTTTGGTTAATATGTTATTCTAAATGTAGCTGAAAATTACCAGATATTTTATTATCCTTCACCATGACTACCTAAAATGATAGTACGGCAATACACTCTATT CCAGGCCCATAACCTAAGCCCATTGAGTTTCTGGTTCGTGCTTCGAATTAGGGCTTAATATAAATTTAGGGAACTCCCTCTTCTTCTTCGCGCGCCCCATTTTGCCCATCCGAGTTTCTGAGACAAACCCTAAAGTTAATCAGGGCGAGAAGAAGATCATGGCGGCGGTTCCAGGACAATTGATTTGGGAGATTGTGAAGAGGAACAACTCGTTTTTGGTCAAGGAGTTTGGGAGGGGAACAGCCGGCGTTCAGTTCAGCAAAGAGTCTAACAACTTATACAATCTGAACTCCTACAAACATTCTGGTTTGGCCAACAAGAAAACTGTTACGATTCAACCTGGAGGCAAAGACCAATCCATTTTGTTTGCAACAACTAAGAGCAAGAAACAGAACAAGCCTTCTTCATTGCTTCACAAATCATTAATGAAGAAAGAGTTCCGTAGGATGGCCAAAGCTGTAACAAATCAGGTGGGAGATAACTACTACAGGCCAGATCTGAAGAGGGATGCTCTTGCAAGATTGAGTGCTGTGAACAGGAGCCTTAAGGTGGCCAAGTCTGGCGTAAAGAAGAGGAACAGGCAAGCGTTGAAATCACGTGGAAGGAAGTGAGAATTGAGCTAGTAGAGAGAAGAGATTGTTGCATTTTTCAATTGTGTTTTCTTTTGGAATGCCAACTTTGTAGTTCGGTTTGGAATCTGAAGGAGTAGTAGTAGTCTGGCAATAGATGTTTTGCTATGTTTTGCGTTACTATAATGGTTATTTCATGTTGAGGTTAACTCTTTGCGGGTAATCTTAAGACTTTGTTTTGGTTAATATGTTATTCTAAATGTAGCTGAAAATTACCAGATATTTTATTATCCTTCACCATGACTACCTAAAATGATAGTACGGCAATACACTCTATT ATGGCGGCGGTTCCAGGACAATTGATTTGGGAGATTGTGAAGAGGAACAACTCGTTTTTGGTCAAGGAGTTTGGGAGGGGAACAGCCGGCGTTCAGTTCAGCAAAGAGTCTAACAACTTATACAATCTGAACTCCTACAAACATTCTGGTTTGGCCAACAAGAAAACTGTTACGATTCAACCTGGAGGCAAAGACCAATCCATTTTGTTTGCAACAACTAAGAGCAAGAAACAGAACAAGCCTTCTTCATTGCTTCACAAATCATTAATGAAGAAAGAGTTCCGTAGGATGGCCAAAGCTGTAACAAATCAGGTGGGAGATAACTACTACAGGCCAGATCTGAAGAGGGATGCTCTTGCAAGATTGAGTGCTGTGAACAGGAGCCTTAAGGTGGCCAAGTCTGGCGTAAAGAAGAGGAACAGGCAAGCGTTGAAATCACGTGGAAGGAAGTGA MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQPGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALARLSAVNRSLKVAKSGVKKRNRQALKSRGRK Homology
BLAST of Cp4.1LG02g14430 vs. ExPASy Swiss-Prot
Match: Q9M0E2 (60S ribosomal protein L28-2 OS=Arabidopsis thaliana OX=3702 GN=RPL28C PE=2 SV=1) HSP 1 Score: 211.5 bits (537), Expect = 6.8e-54 Identity = 106/143 (74.13%), Postives = 123/143 (86.01%), Query Frame = 0
BLAST of Cp4.1LG02g14430 vs. ExPASy Swiss-Prot
Match: O82204 (60S ribosomal protein L28-1 OS=Arabidopsis thaliana OX=3702 GN=RPL28A PE=1 SV=1) HSP 1 Score: 206.5 bits (524), Expect = 2.2e-52 Identity = 104/143 (72.73%), Postives = 124/143 (86.71%), Query Frame = 0
BLAST of Cp4.1LG02g14430 vs. ExPASy Swiss-Prot
Match: O14069 (Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpl44 PE=1 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 1.3e-12 Identity = 46/135 (34.07%), Postives = 73/135 (54.07%), Query Frame = 0
BLAST of Cp4.1LG02g14430 vs. ExPASy Swiss-Prot
Match: Q962T2 (60S ribosomal protein L28 OS=Spodoptera frugiperda OX=7108 GN=RpL28 PE=2 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 1.9e-11 Identity = 46/127 (36.22%), Postives = 65/127 (51.18%), Query Frame = 0
BLAST of Cp4.1LG02g14430 vs. ExPASy Swiss-Prot
Match: Q9VZS5 (60S ribosomal protein L28 OS=Drosophila melanogaster OX=7227 GN=RpL28 PE=1 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 2.7e-10 Identity = 47/136 (34.56%), Postives = 69/136 (50.74%), Query Frame = 0
BLAST of Cp4.1LG02g14430 vs. NCBI nr
Match: XP_022949503.1 (60S ribosomal protein L28-2-like [Cucurbita moschata] >XP_022998347.1 60S ribosomal protein L28-2-like [Cucurbita maxima] >XP_023523885.1 60S ribosomal protein L28-2-like [Cucurbita pepo subsp. pepo] >KAG7036445.1 60S ribosomal protein L28-2 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 285 bits (730), Expect = 8.06e-97 Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0
BLAST of Cp4.1LG02g14430 vs. NCBI nr
Match: XP_038886678.1 (60S ribosomal protein L28-2-like [Benincasa hispida]) HSP 1 Score: 271 bits (693), Expect = 3.54e-91 Identity = 144/150 (96.00%), Postives = 145/150 (96.67%), Query Frame = 0
BLAST of Cp4.1LG02g14430 vs. NCBI nr
Match: XP_008447584.1 (PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >XP_008447585.1 PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >XP_008447586.1 PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >KAA0061117.1 60S ribosomal protein L28-2-like [Cucumis melo var. makuwa] >TYK03788.1 60S ribosomal protein L28-2-like [Cucumis melo var. makuwa]) HSP 1 Score: 268 bits (686), Expect = 3.86e-90 Identity = 141/146 (96.58%), Postives = 142/146 (97.26%), Query Frame = 0
BLAST of Cp4.1LG02g14430 vs. NCBI nr
Match: XP_004146830.1 (60S ribosomal protein L28-2 [Cucumis sativus] >KGN59836.1 hypothetical protein Csa_000918 [Cucumis sativus]) HSP 1 Score: 267 bits (682), Expect = 1.57e-89 Identity = 140/146 (95.89%), Postives = 142/146 (97.26%), Query Frame = 0
BLAST of Cp4.1LG02g14430 vs. NCBI nr
Match: XP_022956223.1 (60S ribosomal protein L28-2-like [Cucurbita moschata] >XP_022980747.1 60S ribosomal protein L28-2-like [Cucurbita maxima] >XP_023529098.1 60S ribosomal protein L28-2-like [Cucurbita pepo subsp. pepo] >KAG7018296.1 60S ribosomal protein L28-2 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 265 bits (678), Expect = 6.85e-89 Identity = 139/150 (92.67%), Postives = 144/150 (96.00%), Query Frame = 0
BLAST of Cp4.1LG02g14430 vs. ExPASy TrEMBL
Match: A0A6J1K7P5 (60S ribosomal protein L28-2-like OS=Cucurbita maxima OX=3661 GN=LOC111493014 PE=3 SV=1) HSP 1 Score: 285 bits (730), Expect = 3.90e-97 Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0
BLAST of Cp4.1LG02g14430 vs. ExPASy TrEMBL
Match: A0A6J1GC99 (60S ribosomal protein L28-2-like OS=Cucurbita moschata OX=3662 GN=LOC111452830 PE=3 SV=1) HSP 1 Score: 285 bits (730), Expect = 3.90e-97 Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0
BLAST of Cp4.1LG02g14430 vs. ExPASy TrEMBL
Match: A0A1S3BIE3 (60S ribosomal protein L28-2-like OS=Cucumis melo OX=3656 GN=LOC103490001 PE=3 SV=1) HSP 1 Score: 268 bits (686), Expect = 1.87e-90 Identity = 141/146 (96.58%), Postives = 142/146 (97.26%), Query Frame = 0
BLAST of Cp4.1LG02g14430 vs. ExPASy TrEMBL
Match: A0A5D3BXS0 (60S ribosomal protein L28-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001760 PE=3 SV=1) HSP 1 Score: 268 bits (686), Expect = 1.87e-90 Identity = 141/146 (96.58%), Postives = 142/146 (97.26%), Query Frame = 0
BLAST of Cp4.1LG02g14430 vs. ExPASy TrEMBL
Match: A0A0A0LIG3 (Ribosomal_L28e domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G849920 PE=3 SV=1) HSP 1 Score: 267 bits (682), Expect = 7.61e-90 Identity = 140/146 (95.89%), Postives = 142/146 (97.26%), Query Frame = 0
BLAST of Cp4.1LG02g14430 vs. TAIR 10
Match: AT4G29410.1 (Ribosomal L28e protein family ) HSP 1 Score: 211.5 bits (537), Expect = 4.8e-55 Identity = 106/143 (74.13%), Postives = 123/143 (86.01%), Query Frame = 0
BLAST of Cp4.1LG02g14430 vs. TAIR 10
Match: AT4G29410.2 (Ribosomal L28e protein family ) HSP 1 Score: 211.5 bits (537), Expect = 4.8e-55 Identity = 106/143 (74.13%), Postives = 123/143 (86.01%), Query Frame = 0
BLAST of Cp4.1LG02g14430 vs. TAIR 10
Match: AT2G19730.1 (Ribosomal L28e protein family ) HSP 1 Score: 206.5 bits (524), Expect = 1.5e-53 Identity = 104/143 (72.73%), Postives = 124/143 (86.71%), Query Frame = 0
BLAST of Cp4.1LG02g14430 vs. TAIR 10
Match: AT2G19730.2 (Ribosomal L28e protein family ) HSP 1 Score: 206.5 bits (524), Expect = 1.5e-53 Identity = 104/143 (72.73%), Postives = 124/143 (86.71%), Query Frame = 0
BLAST of Cp4.1LG02g14430 vs. TAIR 10
Match: AT2G19730.3 (Ribosomal L28e protein family ) HSP 1 Score: 206.5 bits (524), Expect = 1.5e-53 Identity = 104/143 (72.73%), Postives = 124/143 (86.71%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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