Cp4.1LG02g13490 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g13490
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Expansin
Location	Cp4.1LG02: 11088874 .. 11090111 (+)
RNA-Seq Expression	Cp4.1LG02g13490
Synteny	Cp4.1LG02g13490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGGAGATATTCGTAAATTCACAAAATCCCGTTTTACACCATAAGTACTCCCATATCCCTTCTTCCCCAAATGCCCACTTCCCACTCTCTCACTCTCACTTTCTCTTCTCTTTTCAGTTATTGCTTTCAACCAAAAAAAATGGCTACAACGGCGATTCTCCTCTGTATTGCATCTCTTATCTCTACAATGTGGTCGGCTACTGCGAGAATCCCCGGCGTCTACTCCGGCGGTCCTTGGGAGAGTGCTCACGCCACCTTCTACGGCGGCTCCGACGCCTCCGGCACAATGGGTACGCCGGGATAGTGAAATAATGAGATTGAAGGTCAAATGGGTAATGGGATATTGATTTTGGTTTTTGGTTTTGGGTTTTTGTGCAGGTGGGGCTTGTGGGTATGGGAATTTGTACAGCCAAGGCTACGGCGTGAACACGGCGGCGTTGAGCACAGCGCTATTCAATAATGGGCTGAGCTGTGGTGCCTGTTTCGAGATTAAATGTGCGAATGACCCGAGATGGTGCCATTCGGGCAGCCCTTCGATTATGATTACGGCCACGAACTTCTGCCCGCCTAATTTTGCTCTGCCCAGTGACAATGGCGGTTGGTGTAACCCTCCTCGGCCACATTTCGATTTGGCGATGCCTATGTTCCTTAAAATCGCCGAGTACCGCGCTGGTATCGTCCCCGTCGCCTACCGCCGGTCAGCCTCTTCCCCCCACTCCGTCGTATTTTCTCAGTTGATTATACTAATTAAACAAAATTATGAGAGTTTTAAATATATTTTGGATATGTGAAATGACGGTTTAGTAAGAGGGCTAATGGAGCATAATTACGCAGGGTGCCATGCCGGAAGCAAGGGGGGATACGTTACACAATCCACGGGTTCCGGTACTTCAACCTGGTTTTAATCACCAACGTTGCAGGTGCAGGGGATATCGTGAAGGTTAGCGTGAAAGGCACGCGCACAGGCTGGATGAGCATGAGCCGTAACTGGGGTCAAAACTGGCAGTCAAACGCCGTGTTAGTGGGGCAGGCCCTTTCATTTAGAGTCACAGGCAGTGACAGAAGGACTTCCACCACCTACAACGTGGCACCCCCTAATTGGCAGTTCGGGCAGACCTTCATCGGCAAGAATTTTAGGGTTTGAGAAAGACGAGAGAGGTTGACGTGGCAATACATGATTGGAGGACTCCGGGTTAGTAAATATCAGAGGAAGAAGGAAGCAAGAAGGCTGGGGAGGC

mRNA sequence

AGGGAGATATTCGTAAATTCACAAAATCCCGTTTTACACCATAAGTACTCCCATATCCCTTCTTCCCCAAATGCCCACTTCCCACTCTCTCACTCTCACTTTCTCTTCTCTTTTCAGTTATTGCTTTCAACCAAAAAAAATGGCTACAACGGCGATTCTCCTCTGTATTGCATCTCTTATCTCTACAATGTGGTCGGCTACTGCGAGAATCCCCGGCGTCTACTCCGGCGGTCCTTGGGAGAGTGCTCACGCCACCTTCTACGGCGGCTCCGACGCCTCCGGCACAATGGGTGGGGCTTGTGGGTATGGGAATTTGTACAGCCAAGGCTACGGCGTGAACACGGCGGCGTTGAGCACAGCGCTATTCAATAATGGGCTGAGCTGTGGTGCCTGTTTCGAGATTAAATGTGCGAATGACCCGAGATGGTGCCATTCGGGCAGCCCTTCGATTATGATTACGGCCACGAACTTCTGCCCGCCTAATTTTGCTCTGCCCAGTGACAATGGCGGTTGGTGTAACCCTCCTCGGCCACATTTCGATTTGGCGATGCCTATGTTCCTTAAAATCGCCGAGTACCGCGCTGGTATCGTCCCCGTCGCCTACCGCCGAGGAAGAAGGAAGCAAGAAGGCTGGGGAGGC

Coding sequence (CDS)

ATGCCCACTTCCCACTCTCTCACTCTCACTTTCTCTTCTCTTTTCAGTTATTGCTTTCAACCAAAAAAAATGGCTACAACGGCGATTCTCCTCTGTATTGCATCTCTTATCTCTACAATGTGGTCGGCTACTGCGAGAATCCCCGGCGTCTACTCCGGCGGTCCTTGGGAGAGTGCTCACGCCACCTTCTACGGCGGCTCCGACGCCTCCGGCACAATGGGTGGGGCTTGTGGGTATGGGAATTTGTACAGCCAAGGCTACGGCGTGAACACGGCGGCGTTGAGCACAGCGCTATTCAATAATGGGCTGAGCTGTGGTGCCTGTTTCGAGATTAAATGTGCGAATGACCCGAGATGGTGCCATTCGGGCAGCCCTTCGATTATGATTACGGCCACGAACTTCTGCCCGCCTAATTTTGCTCTGCCCAGTGACAATGGCGGTTGGTGTAACCCTCCTCGGCCACATTTCGATTTGGCGATGCCTATGTTCCTTAAAATCGCCGAGTACCGCGCTGGTATCGTCCCCGTCGCCTACCGCCGAGGAAGAAGGAAGCAAGAAGGCTGGGGAGGC

Protein sequence

MPTSHSLTLTFSSLFSYCFQPKKMATTAILLCIASLISTMWSATARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIMITATNFCPPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRGRRKQEGWGG

Homology

[Close]

BLAST of Cp4.1LG02g13490 vs. ExPASy Swiss-Prot
Match: Q38865 (Expansin-A6 OS=Arabidopsis thaliana OX=3702 GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 278.5 bits (711), Expect = 5.7e-74
Identity = 130/161 (80.75%), Postives = 147/161 (91.30%), Query Frame = 0


Query: 28  AILLCIASLISTMWS-ATARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLYSQG 87
           A+L  + S+++T+ + + ARIPGVY+GG WE+AHATFYGGSDASGTMGGACGYGNLYSQG
Sbjct: 2   AMLGLVLSVLTTILALSEARIPGVYNGGGWETAHATFYGGSDASGTMGGACGYGNLYSQG 61

Query: 88  YGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIMITATNFCPPNFALPSDNG 147
           YGVNTAALSTALFNNG SCGACFE+KCA+DP+WCHSGSPSI ITATNFCPPNFA PSDNG
Sbjct: 62  YGVNTAALSTALFNNGFSCGACFELKCASDPKWCHSGSPSIFITATNFCPPNFAQPSDNG 121

Query: 148 GWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRGRRKQEG 188
           GWCNPPRPHFDLAMPMFLKIAEYRAGIVPV++RR   ++ G
Sbjct: 122 GWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFRRVPCRKRG 162

[Close]

BLAST of Cp4.1LG02g13490 vs. ExPASy Swiss-Prot
Match: O48818 (Expansin-A4 OS=Arabidopsis thaliana OX=3702 GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 3.1e-72
Identity = 128/161 (79.50%), Postives = 142/161 (88.20%), Query Frame = 0


Query: 28  AILLCIASLISTMWS-ATARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLYSQG 87
           AI L I      ++S A ARIPG+YSGG W++AHATFYGGSDASGTMGGACGYGNLYSQG
Sbjct: 2   AIKLAILFTTFVLFSLADARIPGIYSGGAWQNAHATFYGGSDASGTMGGACGYGNLYSQG 61

Query: 88  YGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIMITATNFCPPNFALPSDNG 147
           YG NTAALSTALFNNG+SCGACFE+KCANDP+WCHSGSPSI+ITATNFCPPN A PSDNG
Sbjct: 62  YGTNTAALSTALFNNGMSCGACFELKCANDPQWCHSGSPSILITATNFCPPNLAQPSDNG 121

Query: 148 GWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRGRRKQEG 188
           GWCNPPR HFDLAMP+FLKIA+YRAGIVPV+YRR   ++ G
Sbjct: 122 GWCNPPREHFDLAMPVFLKIAQYRAGIVPVSYRRVPCRKRG 162

[Close]

BLAST of Cp4.1LG02g13490 vs. ExPASy Swiss-Prot
Match: O80932 (Expansin-A3 OS=Arabidopsis thaliana OX=3702 GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 3.8e-70
Identity = 124/151 (82.12%), Postives = 136/151 (90.07%), Query Frame = 0


Query: 31  LCIASLISTMWSAT-ARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLYSQGYGV 90
           L +A   S + +AT A+IPGVYSGGPW++AHATFYGGSDASGTMGGACGYGNLYSQGYGV
Sbjct: 10  LWLAVTASFLLTATNAKIPGVYSGGPWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGV 69

Query: 91  NTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIMITATNFCPPNFALPSDNGGWC 150
           NTAALSTALFNNG SCGACFEIKC +DPRWC  G+PSI++TATNFCPPNFA PSD+GGWC
Sbjct: 70  NTAALSTALFNNGFSCGACFEIKCTDDPRWCVPGNPSILVTATNFCPPNFAQPSDDGGWC 129

Query: 151 NPPRPHFDLAMPMFLKIAEYRAGIVPVAYRR 181
           NPPR HFDLAMPMFLKI  YRAGIVPV+YRR
Sbjct: 130 NPPREHFDLAMPMFLKIGLYRAGIVPVSYRR 160

[Close]

BLAST of Cp4.1LG02g13490 vs. ExPASy Swiss-Prot
Match: Q852A1 (Expansin-A7 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 6.5e-70
Identity = 126/166 (75.90%), Postives = 141/166 (84.94%), Query Frame = 0


Query: 25  ATTAILLCIASLISTMWS-ATARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLY 84
           A   ++L +A++++   S A  RIPG Y GG W+SAHATFYGGSDASGTMGGACGYGNLY
Sbjct: 4   APRVLVLVVATVVALQVSPAAGRIPGAYGGGEWQSAHATFYGGSDASGTMGGACGYGNLY 63

Query: 85  SQGYGVNTAALSTALFNNGLSCGACFEIKCANDP--RWCHSGSPSIMITATNFCPPNFAL 144
           SQGYGVN AALSTALFN+G SCGACFEIKC N P   WCH GSPSI+ITATNFCPPN+AL
Sbjct: 64  SQGYGVNNAALSTALFNSGQSCGACFEIKCVNQPGWEWCHPGSPSILITATNFCPPNYAL 123

Query: 145 PSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRGRRKQEG 188
           PSDNGGWCNPPRPHFDLAMPMFL IAEYRAGIVPV+YRR   +++G
Sbjct: 124 PSDNGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRKKG 169

[Close]

BLAST of Cp4.1LG02g13490 vs. ExPASy Swiss-Prot
Match: Q9LZ99 (Expansin-A9 OS=Arabidopsis thaliana OX=3702 GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 6.1e-68
Identity = 118/159 (74.21%), Postives = 139/159 (87.42%), Query Frame = 0


Query: 29  ILLCIASLISTMWSATARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLYSQGYG 88
           ++  +A ++ T ++A A+IPGVY+GGPW +AHATFYG +DASGTMGGACGYGNLYSQGYG
Sbjct: 5   VITFMAVMVVTAFTANAKIPGVYTGGPWINAHATFYGEADASGTMGGACGYGNLYSQGYG 64

Query: 89  VNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIMITATNFCPPNFALPSDNGGW 148
           VNTAALSTALFNNGLSCG+CFE+KC NDP WC  G+PSI+ITATNFCPPNF   SDNGGW
Sbjct: 65  VNTAALSTALFNNGLSCGSCFELKCINDPGWCLPGNPSILITATNFCPPNFNQASDNGGW 124

Query: 149 CNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRGRRKQEG 188
           CNPPR HFDLAMPMFL IA+Y+AGIVPV+YRR   +++G
Sbjct: 125 CNPPREHFDLAMPMFLSIAKYKAGIVPVSYRRIPCRKKG 163

[Close]

BLAST of Cp4.1LG02g13490 vs. NCBI nr
Match: XP_023523157.1 (expansin-A4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 378 bits (970), Expect = 1.09e-130
Identity = 181/187 (96.79%), Postives = 184/187 (98.40%), Query Frame = 0


Query: 1   MPTSHSLTLTFSSLFSYCFQPKKMATTAILLCIASLISTMWSATARIPGVYSGGPWESAH 60
           MPTSHSLTLTFSSLFSYCFQPKKMATTAILLCIASLISTMWSATARIPGVYSGGPWESAH
Sbjct: 1   MPTSHSLTLTFSSLFSYCFQPKKMATTAILLCIASLISTMWSATARIPGVYSGGPWESAH 60

Query: 61  ATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWC 120
           ATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWC
Sbjct: 61  ATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWC 120

Query: 121 HSGSPSIMITATNFCPPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRR 180
           HSGSPSIMITATNFCPPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRR
Sbjct: 121 HSGSPSIMITATNFCPPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRR 180

Query: 181 GRRKQEG 187
              +++G
Sbjct: 181 VPCRKQG 187

[Close]

BLAST of Cp4.1LG02g13490 vs. NCBI nr
Match: KAG7036932.1 (Expansin-A4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 343 bits (879), Expect = 4.66e-117
Identity = 164/172 (95.35%), Postives = 167/172 (97.09%), Query Frame = 0


Query: 17  YCFQPKK-MATTAILLCIASLISTMWSATARIPGVYSGGPWESAHATFYGGSDASGTMGG 76
           YCFQPKK MAT AILLCIASLISTMWSATARIPGVYSGGPWESAHATFYGGSDASGTMGG
Sbjct: 1   YCFQPKKKMATAAILLCIASLISTMWSATARIPGVYSGGPWESAHATFYGGSDASGTMGG 60

Query: 77  ACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIMITATNFC 136
           ACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIMITATNFC
Sbjct: 61  ACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIMITATNFC 120

Query: 137 PPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRGRRKQEG 187
           PPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRR   +++G
Sbjct: 121 PPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKQG 172

[Close]

BLAST of Cp4.1LG02g13490 vs. NCBI nr
Match: XP_022948612.1 (expansin-A4-like [Cucurbita moschata])

HSP 1 Score: 332 bits (851), Expect = 6.47e-113
Identity = 158/164 (96.34%), Postives = 161/164 (98.17%), Query Frame = 0


Query: 24  MATTAILLCIASLISTMWSATARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLY 83
           MATTAILLCIASLISTMWSATARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLY
Sbjct: 1   MATTAILLCIASLISTMWSATARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLY 60

Query: 84  SQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIMITATNFCPPNFALPS 143
           SQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIMITATNFCPPNFALPS
Sbjct: 61  SQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIMITATNFCPPNFALPS 120

Query: 144 DNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRGRRKQEG 187
           DNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRR   +++G
Sbjct: 121 DNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKQG 164

[Close]

BLAST of Cp4.1LG02g13490 vs. NCBI nr
Match: XP_022998337.1 (expansin-A4-like [Cucurbita maxima])

HSP 1 Score: 328 bits (840), Expect = 3.06e-111
Identity = 157/164 (95.73%), Postives = 160/164 (97.56%), Query Frame = 0


Query: 24  MATTAILLCIASLISTMWSATARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLY 83
           MATTAILLCIASLISTMWSATARIPGVYSGGPWESA ATFYGGSDASGTMGGACGYGNLY
Sbjct: 1   MATTAILLCIASLISTMWSATARIPGVYSGGPWESALATFYGGSDASGTMGGACGYGNLY 60

Query: 84  SQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIMITATNFCPPNFALPS 143
           SQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIMITATNFCPPNFALPS
Sbjct: 61  SQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIMITATNFCPPNFALPS 120

Query: 144 DNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRGRRKQEG 187
           DNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRR   +++G
Sbjct: 121 DNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKQG 164

[Close]

BLAST of Cp4.1LG02g13490 vs. NCBI nr
Match: XP_008457477.1 (PREDICTED: expansin-A4-like [Cucumis melo] >KAA0067745.1 expansin-A4-like [Cucumis melo var. makuwa] >QDL52546.1 expansin A3 [Cucumis melo] >TYJ97399.1 expansin-A4-like [Cucumis melo var. makuwa])

HSP 1 Score: 325 bits (834), Expect = 2.51e-110
Identity = 154/157 (98.09%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 24  MATTAILLCIASLISTMWSATARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLY 83
           MA TAILLCIASLISTMW ATARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLY
Sbjct: 1   MAQTAILLCIASLISTMWPATARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLY 60

Query: 84  SQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIMITATNFCPPNFALPS 143
           SQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSI+ITATNFCPPNFALPS
Sbjct: 61  SQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIVITATNFCPPNFALPS 120

Query: 144 DNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRR 180
           DNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRR
Sbjct: 121 DNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRR 157

[Close]

BLAST of Cp4.1LG02g13490 vs. ExPASy TrEMBL
Match: A0A6J1G9Q5 (Expansin OS=Cucurbita moschata OX=3662 GN=LOC111452237 PE=3 SV=1)

HSP 1 Score: 332 bits (851), Expect = 3.13e-113
Identity = 158/164 (96.34%), Postives = 161/164 (98.17%), Query Frame = 0


Query: 24  MATTAILLCIASLISTMWSATARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLY 83
           MATTAILLCIASLISTMWSATARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLY
Sbjct: 1   MATTAILLCIASLISTMWSATARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLY 60

Query: 84  SQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIMITATNFCPPNFALPS 143
           SQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIMITATNFCPPNFALPS
Sbjct: 61  SQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIMITATNFCPPNFALPS 120

Query: 144 DNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRGRRKQEG 187
           DNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRR   +++G
Sbjct: 121 DNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKQG 164

[Close]

BLAST of Cp4.1LG02g13490 vs. ExPASy TrEMBL
Match: A0A6J1K7N8 (Expansin OS=Cucurbita maxima OX=3661 GN=LOC111493005 PE=3 SV=1)

HSP 1 Score: 328 bits (840), Expect = 1.48e-111
Identity = 157/164 (95.73%), Postives = 160/164 (97.56%), Query Frame = 0


Query: 24  MATTAILLCIASLISTMWSATARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLY 83
           MATTAILLCIASLISTMWSATARIPGVYSGGPWESA ATFYGGSDASGTMGGACGYGNLY
Sbjct: 1   MATTAILLCIASLISTMWSATARIPGVYSGGPWESALATFYGGSDASGTMGGACGYGNLY 60

Query: 84  SQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIMITATNFCPPNFALPS 143
           SQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIMITATNFCPPNFALPS
Sbjct: 61  SQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIMITATNFCPPNFALPS 120

Query: 144 DNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRGRRKQEG 187
           DNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRR   +++G
Sbjct: 121 DNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKQG 164

[Close]

BLAST of Cp4.1LG02g13490 vs. ExPASy TrEMBL
Match: A0A1S3C6W6 (Expansin OS=Cucumis melo OX=3656 GN=LOC103497156 PE=2 SV=1)

HSP 1 Score: 325 bits (834), Expect = 1.21e-110
Identity = 154/157 (98.09%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 24  MATTAILLCIASLISTMWSATARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLY 83
           MA TAILLCIASLISTMW ATARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLY
Sbjct: 1   MAQTAILLCIASLISTMWPATARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLY 60

Query: 84  SQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIMITATNFCPPNFALPS 143
           SQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSI+ITATNFCPPNFALPS
Sbjct: 61  SQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIVITATNFCPPNFALPS 120

Query: 144 DNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRR 180
           DNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRR
Sbjct: 121 DNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRR 157

[Close]

BLAST of Cp4.1LG02g13490 vs. ExPASy TrEMBL
Match: A0A5A7VPX6 (Expansin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002180 PE=3 SV=1)

HSP 1 Score: 325 bits (834), Expect = 1.21e-110
Identity = 154/157 (98.09%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 24  MATTAILLCIASLISTMWSATARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLY 83
           MA TAILLCIASLISTMW ATARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLY
Sbjct: 1   MAQTAILLCIASLISTMWPATARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLY 60

Query: 84  SQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIMITATNFCPPNFALPS 143
           SQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSI+ITATNFCPPNFALPS
Sbjct: 61  SQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIVITATNFCPPNFALPS 120

Query: 144 DNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRR 180
           DNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRR
Sbjct: 121 DNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRR 157

[Close]

BLAST of Cp4.1LG02g13490 vs. ExPASy TrEMBL
Match: Q8W5A7 (Expansin OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 322 bits (826), Expect = 2.00e-109
Identity = 155/165 (93.94%), Postives = 157/165 (95.15%), Query Frame = 0


Query: 24  MATTAILLCIASLISTMWSATARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLY 83
           M  TAILLCIASLISTMW A ARIPG+YSGGPWESAHATFYGGSDASGTMGGACGYGNLY
Sbjct: 1   MPKTAILLCIASLISTMWPAAARIPGIYSGGPWESAHATFYGGSDASGTMGGACGYGNLY 60

Query: 84  SQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIMITATNFCPPNFALPS 143
           SQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSI+ITATNFCPPNFALPS
Sbjct: 61  SQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIVITATNFCPPNFALPS 120

Query: 144 DNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRR-GRRKQEG 187
           DNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRR G RK  G
Sbjct: 121 DNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVGCRKPGG 165

[Close]

BLAST of Cp4.1LG02g13490 vs. TAIR 10
Match: AT2G28950.1 (expansin A6 )

HSP 1 Score: 278.5 bits (711), Expect = 4.0e-75
Identity = 130/161 (80.75%), Postives = 147/161 (91.30%), Query Frame = 0


Query: 28  AILLCIASLISTMWS-ATARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLYSQG 87
           A+L  + S+++T+ + + ARIPGVY+GG WE+AHATFYGGSDASGTMGGACGYGNLYSQG
Sbjct: 2   AMLGLVLSVLTTILALSEARIPGVYNGGGWETAHATFYGGSDASGTMGGACGYGNLYSQG 61

Query: 88  YGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIMITATNFCPPNFALPSDNG 147
           YGVNTAALSTALFNNG SCGACFE+KCA+DP+WCHSGSPSI ITATNFCPPNFA PSDNG
Sbjct: 62  YGVNTAALSTALFNNGFSCGACFELKCASDPKWCHSGSPSIFITATNFCPPNFAQPSDNG 121

Query: 148 GWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRGRRKQEG 188
           GWCNPPRPHFDLAMPMFLKIAEYRAGIVPV++RR   ++ G
Sbjct: 122 GWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFRRVPCRKRG 162

[Close]

BLAST of Cp4.1LG02g13490 vs. TAIR 10
Match: AT2G39700.1 (expansin A4 )

HSP 1 Score: 272.7 bits (696), Expect = 2.2e-73
Identity = 128/161 (79.50%), Postives = 142/161 (88.20%), Query Frame = 0


Query: 28  AILLCIASLISTMWS-ATARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLYSQG 87
           AI L I      ++S A ARIPG+YSGG W++AHATFYGGSDASGTMGGACGYGNLYSQG
Sbjct: 2   AIKLAILFTTFVLFSLADARIPGIYSGGAWQNAHATFYGGSDASGTMGGACGYGNLYSQG 61

Query: 88  YGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIMITATNFCPPNFALPSDNG 147
           YG NTAALSTALFNNG+SCGACFE+KCANDP+WCHSGSPSI+ITATNFCPPN A PSDNG
Sbjct: 62  YGTNTAALSTALFNNGMSCGACFELKCANDPQWCHSGSPSILITATNFCPPNLAQPSDNG 121

Query: 148 GWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRGRRKQEG 188
           GWCNPPR HFDLAMP+FLKIA+YRAGIVPV+YRR   ++ G
Sbjct: 122 GWCNPPREHFDLAMPVFLKIAQYRAGIVPVSYRRVPCRKRG 162

[Close]

BLAST of Cp4.1LG02g13490 vs. TAIR 10
Match: AT2G37640.1 (Barwin-like endoglucanases superfamily protein )

HSP 1 Score: 265.8 bits (678), Expect = 2.7e-71
Identity = 124/151 (82.12%), Postives = 136/151 (90.07%), Query Frame = 0


Query: 31  LCIASLISTMWSAT-ARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLYSQGYGV 90
           L +A   S + +AT A+IPGVYSGGPW++AHATFYGGSDASGTMGGACGYGNLYSQGYGV
Sbjct: 10  LWLAVTASFLLTATNAKIPGVYSGGPWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGV 69

Query: 91  NTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIMITATNFCPPNFALPSDNGGWC 150
           NTAALSTALFNNG SCGACFEIKC +DPRWC  G+PSI++TATNFCPPNFA PSD+GGWC
Sbjct: 70  NTAALSTALFNNGFSCGACFEIKCTDDPRWCVPGNPSILVTATNFCPPNFAQPSDDGGWC 129

Query: 151 NPPRPHFDLAMPMFLKIAEYRAGIVPVAYRR 181
           NPPR HFDLAMPMFLKI  YRAGIVPV+YRR
Sbjct: 130 NPPREHFDLAMPMFLKIGLYRAGIVPVSYRR 160

[Close]

BLAST of Cp4.1LG02g13490 vs. TAIR 10
Match: AT5G02260.1 (expansin A9 )

HSP 1 Score: 258.5 bits (659), Expect = 4.3e-69
Identity = 118/159 (74.21%), Postives = 139/159 (87.42%), Query Frame = 0


Query: 29  ILLCIASLISTMWSATARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLYSQGYG 88
           ++  +A ++ T ++A A+IPGVY+GGPW +AHATFYG +DASGTMGGACGYGNLYSQGYG
Sbjct: 5   VITFMAVMVVTAFTANAKIPGVYTGGPWINAHATFYGEADASGTMGGACGYGNLYSQGYG 64

Query: 89  VNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIMITATNFCPPNFALPSDNGGW 148
           VNTAALSTALFNNGLSCG+CFE+KC NDP WC  G+PSI+ITATNFCPPNF   SDNGGW
Sbjct: 65  VNTAALSTALFNNGLSCGSCFELKCINDPGWCLPGNPSILITATNFCPPNFNQASDNGGW 124

Query: 149 CNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRGRRKQEG 188
           CNPPR HFDLAMPMFL IA+Y+AGIVPV+YRR   +++G
Sbjct: 125 CNPPREHFDLAMPMFLSIAKYKAGIVPVSYRRIPCRKKG 163

[Close]

BLAST of Cp4.1LG02g13490 vs. TAIR 10
Match: AT3G55500.1 (expansin A16 )

HSP 1 Score: 257.7 bits (657), Expect = 7.4e-69
Identity = 118/159 (74.21%), Postives = 134/159 (84.28%), Query Frame = 0


Query: 29  ILLCIASLISTMWSATARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLYSQGYG 88
           ILL I  L   +    A IP V+SGG W++AHATFYGG+DASGTMGGACGYGNLYSQGYG
Sbjct: 7   ILLTIFPLFLLLSFTDAGIPRVFSGGSWQTAHATFYGGNDASGTMGGACGYGNLYSQGYG 66

Query: 89  VNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIMITATNFCPPNFALPSDNGGW 148
            NTAALST+LFN+G SCGACFEIKC NDP+WCH G+PS+ +TATNFCPPN A PSDNGGW
Sbjct: 67  TNTAALSTSLFNSGQSCGACFEIKCVNDPKWCHPGNPSVFVTATNFCPPNLAQPSDNGGW 126

Query: 149 CNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRGRRKQEG 188
           CNPPR HFDLAMP+FLKIAEYRAGIVP++YRR   ++ G
Sbjct: 127 CNPPRSHFDLAMPVFLKIAEYRAGIVPISYRRVACRKSG 165

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g13490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38865	5.7e-74	80.75	Expansin-A6 OS=Arabidopsis thaliana OX=3702 GN=EXPA6 PE=2 SV=2	[more]
O48818	3.1e-72	79.50	Expansin-A4 OS=Arabidopsis thaliana OX=3702 GN=EXPA4 PE=1 SV=1	[more]
O80932	3.8e-70	82.12	Expansin-A3 OS=Arabidopsis thaliana OX=3702 GN=EXPA3 PE=2 SV=1	[more]
Q852A1	6.5e-70	75.90	Expansin-A7 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA7 PE=2 SV=1	[more]
Q9LZ99	6.1e-68	74.21	Expansin-A9 OS=Arabidopsis thaliana OX=3702 GN=EXPA9 PE=2 SV=1	[more]

BLAST of Cp4.1LG02g13490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023523157.1	1.09e-130	96.79	expansin-A4-like [Cucurbita pepo subsp. pepo]	[more]
KAG7036932.1	4.66e-117	95.35	Expansin-A4, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022948612.1	6.47e-113	96.34	expansin-A4-like [Cucurbita moschata]	[more]
XP_022998337.1	3.06e-111	95.73	expansin-A4-like [Cucurbita maxima]	[more]
XP_008457477.1	2.51e-110	98.09	PREDICTED: expansin-A4-like [Cucumis melo] >KAA0067745.1 expansin-A4-like [Cucum...	[more]

BLAST of Cp4.1LG02g13490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G9Q5	3.13e-113	96.34	Expansin OS=Cucurbita moschata OX=3662 GN=LOC111452237 PE=3 SV=1	[more]
A0A6J1K7N8	1.48e-111	95.73	Expansin OS=Cucurbita maxima OX=3661 GN=LOC111493005 PE=3 SV=1	[more]
A0A1S3C6W6	1.21e-110	98.09	Expansin OS=Cucumis melo OX=3656 GN=LOC103497156 PE=2 SV=1	[more]
A0A5A7VPX6	1.21e-110	98.09	Expansin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002180 PE=3...	[more]
Q8W5A7	2.00e-109	93.94	Expansin OS=Cucumis sativus OX=3659 PE=2 SV=1	[more]

BLAST of Cp4.1LG02g13490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28950.1	4.0e-75	80.75	expansin A6	[more]
AT2G39700.1	2.2e-73	79.50	expansin A4	[more]
AT2G37640.1	2.7e-71	82.12	Barwin-like endoglucanases superfamily protein	[more]
AT5G02260.1	4.3e-69	74.21	expansin A9	[more]
AT3G55500.1	7.4e-69	74.21	expansin A16	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007118	Expansin/Lol pI	PRINTS	PR01225	EXPANSNFAMLY	coord: 95..113 score: 73.29 coord: 171..187 score: 47.94 coord: 55..70 score: 67.19 coord: 73..91 score: 76.97
IPR002963	Expansin	PRINTS	PR01226	EXPANSIN	coord: 113..124 score: 53.33 coord: 127..137 score: 82.42 coord: 86..100 score: 90.0 coord: 163..176 score: 78.33 coord: 146..163 score: 81.3
IPR007112	Expansin/pollen allergen, DPBB domain	SMART	SM00837	dpbb_1	coord: 91..178 e-value: 2.8E-58 score: 209.6
IPR007112	Expansin/pollen allergen, DPBB domain	PROSITE	PS50842	EXPANSIN_EG45	coord: 74..188 score: 27.848366
IPR036908	RlpA-like domain superfamily	GENE3D	2.40.40.10		coord: 42..181 e-value: 1.3E-44 score: 153.7
IPR036908	RlpA-like domain superfamily	SUPERFAMILY	50685	Barwin-like endoglucanases	coord: 55..180
IPR009009	RlpA-like protein, double-psi beta-barrel domain	PFAM	PF03330	DPBB_1	coord: 91..178 e-value: 1.1E-21 score: 76.9
None	No IPR available	PANTHER	PTHR31867:SF100	EXPANSIN	coord: 27..187
None	No IPR available	PANTHER	PTHR31867	EXPANSIN-A15	coord: 27..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g13490.1	Cp4.1LG02g13490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009664	plant-type cell wall organization
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016020	membrane