Cp4.1LG02g08610 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG02g08610
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionLate embryogenesis abundant protein group 8 protein
LocationCp4.1LG02: 113768 .. 114052 (-)
RNA-Seq ExpressionCp4.1LG02g08610
SyntenyCp4.1LG02g08610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGAAGATGGAAGAGCATGAGCCGCCGCAGCAGCAAATGAGGCGGGAAACAGAAGAAGACAAGGGTTCGGTGGAAGAACTGCTGCCACTGGAGAGCAGTCCTTACGTGAAATACAAGGACTTGGAGGACTACAAAAACAAGGGGTATGGGGTGGAGGGCCATATTGAGCCCAAGCCCATTCAGGGCGGCGGCACCGATGCCCCCACCTTGTCCGGCAGCGGCTTCCCAGAGGTGGCTCCGGCCTCCATTGACGCCGTCACCAGACAAGGCCTTATCCACTGA

mRNA sequence

ATGTGGAAGATGGAAGAGCATGAGCCGCCGCAGCAGCAAATGAGGCGGGAAACAGAAGAAGACAAGGGTTCGGTGGAAGAACTGCTGCCACTGGAGAGCAGTCCTTACGTGAAATACAAGGACTTGGAGGACTACAAAAACAAGGGGTATGGGGTGGAGGGCCATATTGAGCCCAAGCCCATTCAGGGCGGCGGCACCGATGCCCCCACCTTGTCCGGCAGCGGCTTCCCAGAGGTGGCTCCGGCCTCCATTGACGCCGTCACCAGACAAGGCCTTATCCACTGA

Coding sequence (CDS)

ATGTGGAAGATGGAAGAGCATGAGCCGCCGCAGCAGCAAATGAGGCGGGAAACAGAAGAAGACAAGGGTTCGGTGGAAGAACTGCTGCCACTGGAGAGCAGTCCTTACGTGAAATACAAGGACTTGGAGGACTACAAAAACAAGGGGTATGGGGTGGAGGGCCATATTGAGCCCAAGCCCATTCAGGGCGGCGGCACCGATGCCCCCACCTTGTCCGGCAGCGGCTTCCCAGAGGTGGCTCCGGCCTCCATTGACGCCGTCACCAGACAAGGCCTTATCCACTGA

Protein sequence

MWKMEEHEPPQQQMRRETEEDKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGGTDAPTLSGSGFPEVAPASIDAVTRQGLIH
Homology
BLAST of Cp4.1LG02g08610 vs. NCBI nr
Match: KAG6608652.1 (hypothetical protein SDJN03_01994, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037969.1 hypothetical protein SDJN02_01602, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 193 bits (490), Expect = 5.18e-62
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 1  MWKMEEHEPPQQQMRRETEEDKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKP 60
          MWKMEEHEPPQQQMRRETEE+KGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKP
Sbjct: 1  MWKMEEHEPPQQQMRRETEEEKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKP 60

Query: 61 IQGGGTDAPTLSGSGFPEVAPASIDAVTRQGLIH 94
          IQGGGTDAPTLSGSGFPEVAPASIDAVTRQGLIH
Sbjct: 61 IQGGGTDAPTLSGSGFPEVAPASIDAVTRQGLIH 94

BLAST of Cp4.1LG02g08610 vs. NCBI nr
Match: XP_023535424.1 (uncharacterized protein LOC111796868 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 136 bits (343), Expect = 1.33e-39
Identity = 69/89 (77.53%), Postives = 75/89 (84.27%), Query Frame = 0

Query: 5  EEHEPPQQQMRRETEEDKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGG 64
          EE +  QQQ+ RE EE K SVEELLPLESSPYVKYKDLE+YK KGYG EGH+EPKP QGG
Sbjct: 5  EEEQQQQQQLVREKEE-KASVEELLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGG 64

Query: 65 GTDAPTLSGSGFPEVAPASIDAVTRQGLI 93
          GTDAPTLSGSGFPEV PA+ID VT  GL+
Sbjct: 65 GTDAPTLSGSGFPEVKPATIDFVTNHGLL 92

BLAST of Cp4.1LG02g08610 vs. NCBI nr
Match: XP_022937316.1 (uncharacterized protein LOC111443639 [Cucurbita moschata] >KAG6591201.1 hypothetical protein SDJN03_13547, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024086.1 hypothetical protein SDJN02_12899, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136 bits (342), Expect = 1.89e-39
Identity = 69/89 (77.53%), Postives = 75/89 (84.27%), Query Frame = 0

Query: 5  EEHEPPQQQMRRETEEDKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGG 64
          EE +  QQQ+ RE EE K SVEELLPLESSPYVKYKDLE+YK KGYG EGH+EPKP QGG
Sbjct: 5  EEEQQQQQQLVREKEE-KDSVEELLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGG 64

Query: 65 GTDAPTLSGSGFPEVAPASIDAVTRQGLI 93
          GTDAPTLSGSGFPEV PA+ID VT  GL+
Sbjct: 65 GTDAPTLSGSGFPEVKPATIDFVTNHGLL 92

BLAST of Cp4.1LG02g08610 vs. NCBI nr
Match: KAA0064662.1 (late embryogenesis abundant protein group 8 protein [Cucumis melo var. makuwa] >TYK19929.1 late embryogenesis abundant protein group 8 protein [Cucumis melo var. makuwa])

HSP 1 Score: 133 bits (334), Expect = 2.71e-38
Identity = 60/75 (80.00%), Postives = 67/75 (89.33%), Query Frame = 0

Query: 20 EDKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGGTDAPTLSGSGFPEV 79
          E+K  VE+LLPLESSPYVKYKDLE+YK KGYG EGH+EPKP QGGGTDAPTLSGSG+PEV
Sbjct: 14 EEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGTDAPTLSGSGYPEV 73

Query: 80 APASIDAVTRQGLIH 94
           P +ID VT+QGLIH
Sbjct: 74 QPTTIDVVTKQGLIH 88

BLAST of Cp4.1LG02g08610 vs. NCBI nr
Match: KAE8649966.1 (hypothetical protein Csa_012992 [Cucumis sativus])

HSP 1 Score: 127 bits (319), Expect = 5.72e-36
Identity = 59/75 (78.67%), Postives = 65/75 (86.67%), Query Frame = 0

Query: 20 EDKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGGTDAPTLSGSGFPEV 79
          E+K  VE+LLPLESSPYVKYKDLE+YK KGYGVEGH+ PKP QGGGTDAPTLSGSG PEV
Sbjct: 17 EEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQGGGTDAPTLSGSGLPEV 76

Query: 80 APASIDAVTRQGLIH 94
           P +ID VT+QGLI 
Sbjct: 77 QPTTIDIVTKQGLIR 91

BLAST of Cp4.1LG02g08610 vs. ExPASy TrEMBL
Match: A0A6J1FA12 (uncharacterized protein LOC111443639 OS=Cucurbita moschata OX=3662 GN=LOC111443639 PE=4 SV=1)

HSP 1 Score: 136 bits (342), Expect = 9.17e-40
Identity = 69/89 (77.53%), Postives = 75/89 (84.27%), Query Frame = 0

Query: 5  EEHEPPQQQMRRETEEDKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGG 64
          EE +  QQQ+ RE EE K SVEELLPLESSPYVKYKDLE+YK KGYG EGH+EPKP QGG
Sbjct: 5  EEEQQQQQQLVREKEE-KDSVEELLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGG 64

Query: 65 GTDAPTLSGSGFPEVAPASIDAVTRQGLI 93
          GTDAPTLSGSGFPEV PA+ID VT  GL+
Sbjct: 65 GTDAPTLSGSGFPEVKPATIDFVTNHGLL 92

BLAST of Cp4.1LG02g08610 vs. ExPASy TrEMBL
Match: A0A5A7V8I8 (Late embryogenesis abundant protein group 8 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00410 PE=4 SV=1)

HSP 1 Score: 133 bits (334), Expect = 1.31e-38
Identity = 60/75 (80.00%), Postives = 67/75 (89.33%), Query Frame = 0

Query: 20 EDKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGGTDAPTLSGSGFPEV 79
          E+K  VE+LLPLESSPYVKYKDLE+YK KGYG EGH+EPKP QGGGTDAPTLSGSG+PEV
Sbjct: 14 EEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGTDAPTLSGSGYPEV 73

Query: 80 APASIDAVTRQGLIH 94
           P +ID VT+QGLIH
Sbjct: 74 QPTTIDVVTKQGLIH 88

BLAST of Cp4.1LG02g08610 vs. ExPASy TrEMBL
Match: A0A6J1C2A9 (uncharacterized protein LOC111007621 OS=Momordica charantia OX=3673 GN=LOC111007621 PE=4 SV=1)

HSP 1 Score: 127 bits (318), Expect = 5.29e-36
Identity = 62/87 (71.26%), Postives = 71/87 (81.61%), Query Frame = 0

Query: 10  PQQQMRRETEEDKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQG---GGT 69
           PQ +   + EE+K SVEELLPLESSPYVKYKDLE+YK +GYG EGH+EPKP QG   GGT
Sbjct: 14  PQTRTMGKREEEKASVEELLPLESSPYVKYKDLEEYKREGYGAEGHLEPKPNQGQGGGGT 73

Query: 70  DAPTLSGSGFPEVAPASIDAVTRQGLI 93
           DAPTLSG+GFPEV P++ID  T QGLI
Sbjct: 74  DAPTLSGAGFPEVKPSTIDVATNQGLI 100

BLAST of Cp4.1LG02g08610 vs. ExPASy TrEMBL
Match: A0A0A0L5Y6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664380 PE=4 SV=1)

HSP 1 Score: 127 bits (319), Expect = 1.86e-35
Identity = 59/75 (78.67%), Postives = 65/75 (86.67%), Query Frame = 0

Query: 20  EDKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGGTDAPTLSGSGFPEV 79
           E+K  VE+LLPLESSPYVKYKDLE+YK KGYGVEGH+ PKP QGGGTDAPTLSGSG PEV
Sbjct: 81  EEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQGGGTDAPTLSGSGLPEV 140

Query: 80  APASIDAVTRQGLIH 94
            P +ID VT+QGLI 
Sbjct: 141 QPTTIDIVTKQGLIR 155

BLAST of Cp4.1LG02g08610 vs. ExPASy TrEMBL
Match: A0A438ET15 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_005747 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.05e-22
Identity = 46/87 (52.87%), Postives = 64/87 (73.56%), Query Frame = 0

Query: 12 QQMRRETEEDKGSVEEL-----LPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGG- 71
          +Q+R++TEE++ + E+      LP+ESSPY+KY DLEDYK +GYG EGH+EPKP QGGG 
Sbjct: 6  EQLRKKTEEEERAEEKASKLRGLPMESSPYLKYTDLEDYKRQGYGTEGHLEPKPNQGGGG 65

Query: 72 TDAPTLSGSGFPEVAPASIDAVTRQGL 92
          TDAPTL+G+   +   + +DA  R G+
Sbjct: 66 TDAPTLAGTDLSKGPASVVDAAHRVGI 92

BLAST of Cp4.1LG02g08610 vs. TAIR 10
Match: AT2G33690.1 (Late embryogenesis abundant protein, group 6 )

HSP 1 Score: 69.3 bits (168), Expect = 1.8e-12
Identity = 35/70 (50.00%), Postives = 47/70 (67.14%), Query Frame = 0

Query: 22 KGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGG-TDAPTLSGSGFPEVA 81
          K   ++ LPLE+SPY KY+D+EDYK   YG  GH + KP  GGG TDAPT SG    + A
Sbjct: 3  KSEEKQELPLETSPYTKYEDIEDYKKNAYGTSGHQDVKPGHGGGTTDAPTPSG----DAA 62

Query: 82 PASIDAVTRQ 91
          P++ID+  ++
Sbjct: 63 PSAIDSANQK 68

BLAST of Cp4.1LG02g08610 vs. TAIR 10
Match: AT2G23110.1 (Late embryogenesis abundant protein, group 6 )

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-09
Identity = 39/96 (40.62%), Postives = 56/96 (58.33%), Query Frame = 0

Query: 5  EEHEPP--QQQMRRETEEDKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQ 64
          ++ +PP  +Q+++    +D  S++       +PY+ Y +LEDYK KGYG +GH EPK   
Sbjct: 3  DQKKPPTTEQEVKEVKNDDLESIK-------TPYLDYDNLEDYKMKGYGAQGHQEPKLGM 62

Query: 65 GGG-TDAPTLS-----GSGFPEVAPASIDAVTRQGL 93
          GGG TDAPT S     G G      +S DA+ RQG+
Sbjct: 63 GGGATDAPTPSGGLGRGGGAASTDLSSTDAINRQGV 91

BLAST of Cp4.1LG02g08610 vs. TAIR 10
Match: AT2G23110.2 (Late embryogenesis abundant protein, group 6 )

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-09
Identity = 39/96 (40.62%), Postives = 56/96 (58.33%), Query Frame = 0

Query: 5  EEHEPP--QQQMRRETEEDKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQ 64
          ++ +PP  +Q+++    +D  S++       +PY+ Y +LEDYK KGYG +GH EPK   
Sbjct: 3  DQKKPPTTEQEVKEVKNDDLESIK-------TPYLDYDNLEDYKMKGYGAQGHQEPKLGM 62

Query: 65 GGG-TDAPTLS-----GSGFPEVAPASIDAVTRQGL 93
          GGG TDAPT S     G G      +S DA+ RQG+
Sbjct: 63 GGGATDAPTPSGGLGRGGGAASTDLSSTDAINRQGV 91

BLAST of Cp4.1LG02g08610 vs. TAIR 10
Match: AT2G23120.1 (Late embryogenesis abundant protein, group 6 )

HSP 1 Score: 48.9 bits (115), Expect = 2.6e-06
Identity = 31/59 (52.54%), Postives = 38/59 (64.41%), Query Frame = 0

Query: 16 RETEEDKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKP-IQGGGTDAPTLSG 74
          ++TE+ K   +  LP + SPY+    LEDYK K YG EGH EP P + GG TDAPT SG
Sbjct: 16 KKTEQVK---DNDLPTD-SPYMATGTLEDYKLKAYGAEGHQEPTPGLGGGSTDAPTPSG 70

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6608652.15.18e-6298.94hypothetical protein SDJN03_01994, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023535424.11.33e-3977.53uncharacterized protein LOC111796868 [Cucurbita pepo subsp. pepo][more]
XP_022937316.11.89e-3977.53uncharacterized protein LOC111443639 [Cucurbita moschata] >KAG6591201.1 hypothet... [more]
KAA0064662.12.71e-3880.00late embryogenesis abundant protein group 8 protein [Cucumis melo var. makuwa] >... [more]
KAE8649966.15.72e-3678.67hypothetical protein Csa_012992 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A6J1FA129.17e-4077.53uncharacterized protein LOC111443639 OS=Cucurbita moschata OX=3662 GN=LOC1114436... [more]
A0A5A7V8I81.31e-3880.00Late embryogenesis abundant protein group 8 protein OS=Cucumis melo var. makuwa ... [more]
A0A6J1C2A95.29e-3671.26uncharacterized protein LOC111007621 OS=Momordica charantia OX=3673 GN=LOC111007... [more]
A0A0A0L5Y61.86e-3578.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664380 PE=4 SV=1[more]
A0A438ET151.05e-2252.87Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_005747 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G33690.11.8e-1250.00Late embryogenesis abundant protein, group 6 [more]
AT2G23110.11.9e-0940.63Late embryogenesis abundant protein, group 6 [more]
AT2G23110.21.9e-0940.63Late embryogenesis abundant protein, group 6 [more]
AT2G23120.12.6e-0652.54Late embryogenesis abundant protein, group 6 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018930Late embryogenesis abundant protein, LEA-18PFAMPF10714LEA_6coord: 22..92
e-value: 7.9E-28
score: 96.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availablePANTHERPTHR33922:SF15SUBFAMILY NOT NAMEDcoord: 7..93
NoneNo IPR availablePANTHERPTHR33922OS01G0888066 PROTEIN-RELATEDcoord: 7..93

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g08610.1Cp4.1LG02g08610.1mRNA