Cp4.1LG02g06170 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g06170
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	BRISC and BRCA1-A complex member 1
Location	Cp4.1LG02: 1303229 .. 1305919 (-)
RNA-Seq Expression	Cp4.1LG02g06170
Synteny	Cp4.1LG02g06170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGATTATTTTAATTAATTGTCTGAATTAATTAATCGACACGACATCATTTCTGTGTTGCAATTTGCAGAGAGCGACGGCGAGAACCATGGAGGGTATCGAAGGGGAGAGAGGAGGAAGCCGATACTCACTGAAGCCATCGAGAATTAACAACGAAGACATTCTGTTCTGCATAGATGTGAACCCCGAATCCTCCGTCGAGATCAAAACCACCGGCTCTAATGGACGACCGATCACCAGAATGGACTCCATTAAGCAAGCAATTCTTCTCTTCGTCCACGCCAAACTCTCCATGAATCCCGACCACCGATTTGCCTTCACCACCATCGCCAAATCTGCCACTTGGGTAATGCCCTATCCATCGCCTATTTCTTGTTGATCTTGCTTTCGTCCTTCTGTTCTTTCTATTTTCCAGAAATTTAGAATTGGGATGATGAAGTTTCTAGGGTTTGTGTCTGTTTTAGGTTAAAGGTAATTTTAATTTTAGGGGAGTTATATATTTCTTCGTATTCTTCCAGTCTTTTTAACTCCACGGACAGCCTTTCTGTTCTTAGCATTTTGCGCATCGTTATGCTTATTGACCTAAACTGGTGAACTGAAATTGTAACTAGTGATCAAGGATTTAATGTGGTTCTGGAGAAATTATGGATTGTTCTTTGGTTGGAAACTCGCAGTTTAAATTCTTATGCAATTTGAGTTGTACTTGGCATTCTGTTTGGAGACTATATCTGAGTTTTGCCTCTGATCCAACTCATAGAACTTTAAGATTTTGCATAGTGTGAATGTGATTATCCTCTTAGGTCCTTATTTATTGTTCAATCGGTATCTGATTTGCTACTTATAGTTGAAGTACATAGCATAAACTTGCTGATCAAACTAGTAATCAATTTGCAACTTTGAATTGAAGAATATAACTCAACCATGCTGATCCAACGCATTTTCCTTTCCACTTTGTTTACTCTTTCTAAGAGGTGTTGGTTTGATATTGTATTTAAAGGGGGAAAGGGAGAAGATGATATCTCCTATGTATCCTTTATGTATCCATTCTTGGAGTCTTTTTTGTTGAGGATTCTTGGGAGGGAGTCTCACATTGGCTAATTAAAGAGATGATCATGGGTTTATAAGTAAGGAATATATCTCCATTGATATGAGGCTTTTTAGGGAGACCATAAGTAAAGCCATGAGAGCTTATGCTCAAGGTGGACAATATCATACAATTGTAGAGGTTCGCGATTCCTAACATGGTATTAGTGTCATGCTCTTAACTTAGCCATACTAATCGAATCCTCAAGTGTCGAACAAAGGGTGTACTTCTGGAGCTGAGCCTTGATAAATGGAGACTGTTTGAGGGCTACATAGGTTTAAAGGGAGACTTTATGAAGGGAGTCCCACATTGTAATTAAGGGGATAATCATGGGTTTATAAGTAAGGAATATATCTTCATTGGTATGAGGCCTTTAGGGAAAACCAAAAGTAAAGCCACGAGAGCTTATAATCAAAGTAGACAATATCATACCATTATGGAGGTTTGTGATTCCTAACATTTATGGGGTAGTGAAACCTGGAGACAGGCATGGTGAGGACTTTACTCTGTGCTATGCATATACTGTTACTCTTGCACTCTTATGACAAGCTAAGTTGTTAAAACTCTAAACCCGATTGAAATATTGTTCGAGCTTCCACTTAAGAAAGCCCAATTTTGATCATAGCTTTATTGTTAGATGAAATGTCTGCTTCTAATCCAAAATGTTTATGATTGTAGCTCAAAAAAGATTTTAGCAGTGATATTGCATCTGTGGAAGCTGCAATCAGGGGGCTTGTTCCTACTTCCTCCTGCAGTCATGCCGATCTTACCAGCCTTTTTCGATTAGCTGCTCATGAAGCTAGAAAGTCGACCGCTCAGAATCATATTCTAAGAGTGGTATGCTCATTATACCAATATTCGTAATCTGTCGATTCAACTCAAAGAATATATCATTGTTCTGAAATTATGAGTTAGCCTTGATTATCAGACCTTGAACTCCGTATGTTCCAATGAATGCTTGACAAATCATGTTTATAACCATTGCTGCATTTAGATTCTTATATATTGTAGATCATCAACACGACCACAACATCAATGGCCTGTGAACCAAAAACTCTTCACTTTAGATGTTATCTACCTCCATGAGAAGCCTGGACCAGACAACTGCCCACAGGAGGTCTATGATGCCTTAGTTGATGCCCTTGATCTTGTCAGCCAGTATGAAGGCTATATTTTCGAGAGCGGCCAGGGAGTTGCACGTGTTCTTTACCGTTGCATGTGTTTGTTGTTATCACACCCCCAGCAACGAATATCACTAGACGATCTCAACATACCAAAGCTTCTTACAAAGAAAGTACCTCCTGCTGATTCCATCCCTGCAAACGAAGTTGTCCCTGTTACCAGCCAGTGAGACGAAGGGCTTAAAACAATAGTGGAAATCTGGATGCTGTTGTTATTGCTGCTGTAGCTTAATGGTACCTCACTCTTCAGTAAGCTGATGCTTCTCTCTCTTTTTTTTCATGGTTACAGATTAAGTCTTGTTTATTGTACATATAGACAAGTTGACGACGAGAGAGACGACACTTAATGGTACAGTATCAACTTTGTTACGCTCTTATTTGCTCAGAACGTCGTATATTTTTATGAATCATATTACATGTTGGTACA

mRNA sequence

TGGATTATTTTAATTAATTGTCTGAATTAATTAATCGACACGACATCATTTCTGTGTTGCAATTTGCAGAGAGCGACGGCGAGAACCATGGAGGGTATCGAAGGGGAGAGAGGAGGAAGCCGATACTCACTGAAGCCATCGAGAATTAACAACGAAGACATTCTGTTCTGCATAGATGTGAACCCCGAATCCTCCGTCGAGATCAAAACCACCGGCTCTAATGGACGACCGATCACCAGAATGGACTCCATTAAGCAAGCAATTCTTCTCTTCGTCCACGCCAAACTCTCCATGAATCCCGACCACCGATTTGCCTTCACCACCATCGCCAAATCTGCCACTTGGCTCAAAAAAGATTTTAGCAGTGATATTGCATCTGTGGAAGCTGCAATCAGGGGGCTTGTTCCTACTTCCTCCTGCAGTCATGCCGATCTTACCAGCCTTTTTCGATTAGCTGCTCATGAAGCTAGAAAGTCGACCGCTCAGAATCATATTCTAAGAGTGATTCTTATATATTGTAGATCATCAACACGACCACAACATCAATGGCCTGTGAACCAAAAACTCTTCACTTTAGATGTTATCTACCTCCATGAGAAGCCTGGACCAGACAACTGCCCACAGGAGGTCTATGATGCCTTAGTTGATGCCCTTGATCTTGTCAGCCAGTATGAAGGCTATATTTTCGAGAGCGGCCAGGGAGTTGCACGTGTTCTTTACCGTTGCATGTGTTTGTTGTTATCACACCCCCAGCAACGAATATCACTAGACGATCTCAACATACCAAAGCTTCTTACAAAGAAAGTACCTCCTGCTGATTCCATCCCTGCAAACGAAGTTGTCCCTGTTACCAGCCAGTGAGACGAAGGGCTTAAAACAATAGTGGAAATCTGGATGCTGTTGTTATTGCTGCTGTAGCTTAATGGTACCTCACTCTTCAGTAAGCTGATGCTTCTCTCTCTTTTTTTTCATGGTTACAGATTAAGTCTTGTTTATTGTACATATAGACAAGTTGACGACGAGAGAGACGACACTTAATGGTACAGTATCAACTTTGTTACGCTCTTATTTGCTCAGAACGTCGTATATTTTTATGAATCATATTACATGTTGGTACA

Coding sequence (CDS)

ATGGAGGGTATCGAAGGGGAGAGAGGAGGAAGCCGATACTCACTGAAGCCATCGAGAATTAACAACGAAGACATTCTGTTCTGCATAGATGTGAACCCCGAATCCTCCGTCGAGATCAAAACCACCGGCTCTAATGGACGACCGATCACCAGAATGGACTCCATTAAGCAAGCAATTCTTCTCTTCGTCCACGCCAAACTCTCCATGAATCCCGACCACCGATTTGCCTTCACCACCATCGCCAAATCTGCCACTTGGCTCAAAAAAGATTTTAGCAGTGATATTGCATCTGTGGAAGCTGCAATCAGGGGGCTTGTTCCTACTTCCTCCTGCAGTCATGCCGATCTTACCAGCCTTTTTCGATTAGCTGCTCATGAAGCTAGAAAGTCGACCGCTCAGAATCATATTCTAAGAGTGATTCTTATATATTGTAGATCATCAACACGACCACAACATCAATGGCCTGTGAACCAAAAACTCTTCACTTTAGATGTTATCTACCTCCATGAGAAGCCTGGACCAGACAACTGCCCACAGGAGGTCTATGATGCCTTAGTTGATGCCCTTGATCTTGTCAGCCAGTATGAAGGCTATATTTTCGAGAGCGGCCAGGGAGTTGCACGTGTTCTTTACCGTTGCATGTGTTTGTTGTTATCACACCCCCAGCAACGAATATCACTAGACGATCTCAACATACCAAAGCTTCTTACAAAGAAAGTACCTCCTGCTGATTCCATCCCTGCAAACGAAGTTGTCCCTGTTACCAGCCAGTGA

Protein sequence

MEGIEGERGGSRYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSLFRLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQEVYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKKVPPADSIPANEVVPVTSQ

Homology

[Close]

BLAST of Cp4.1LG02g06170 vs. NCBI nr
Match: XP_023524345.1 (uncharacterized protein LOC111788267 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 517 bits (1332), Expect = 4.63e-185
Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 0


Query: 1   MEGIEGERGGSRYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL 60
           MEGIEGERGGSRYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL
Sbjct: 1   MEGIEGERGGSRYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL 60

Query: 61  LFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSLF 120
           LFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSLF
Sbjct: 61  LFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSLF 120

Query: 121 RLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQE 180
           RLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQE
Sbjct: 121 RLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQE 180

Query: 181 VYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKKV 240
           VYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKKV
Sbjct: 181 VYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKKV 240

Query: 241 PPADSIPANEVVPVTSQ 257
           PPADSIPANEVVPVTSQ
Sbjct: 241 PPADSIPANEVVPVTSQ 257

[Close]

BLAST of Cp4.1LG02g06170 vs. NCBI nr
Match: XP_022941399.1 (uncharacterized protein LOC111446703 [Cucurbita moschata] >KAG6608386.1 BRISC and BRCA1-A complex member 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037727.1 BRISC and BRCA1-A complex member 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 516 bits (1329), Expect = 1.33e-184
Identity = 256/257 (99.61%), Postives = 257/257 (100.00%), Query Frame = 0


Query: 1   MEGIEGERGGSRYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL 60
           MEG+EGERGGSRYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL
Sbjct: 1   MEGMEGERGGSRYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL 60

Query: 61  LFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSLF 120
           LFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSLF
Sbjct: 61  LFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSLF 120

Query: 121 RLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQE 180
           RLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQE
Sbjct: 121 RLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQE 180

Query: 181 VYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKKV 240
           VYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKKV
Sbjct: 181 VYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKKV 240

Query: 241 PPADSIPANEVVPVTSQ 257
           PPADSIPANEVVPVTSQ
Sbjct: 241 PPADSIPANEVVPVTSQ 257

[Close]

BLAST of Cp4.1LG02g06170 vs. NCBI nr
Match: XP_022982400.1 (uncharacterized protein LOC111481237 [Cucurbita maxima])

HSP 1 Score: 514 bits (1325), Expect = 5.40e-184
Identity = 255/257 (99.22%), Postives = 257/257 (100.00%), Query Frame = 0


Query: 1   MEGIEGERGGSRYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL 60
           MEGIEGERGGSRYSL+PSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL
Sbjct: 1   MEGIEGERGGSRYSLQPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL 60

Query: 61  LFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSLF 120
           LFVHAKLSMNPDHRFAFTTIAKSATWLK+DFSSDIASVEAAIRGLVPTSSCSHADLTSLF
Sbjct: 61  LFVHAKLSMNPDHRFAFTTIAKSATWLKRDFSSDIASVEAAIRGLVPTSSCSHADLTSLF 120

Query: 121 RLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQE 180
           RLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQE
Sbjct: 121 RLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQE 180

Query: 181 VYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKKV 240
           VYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKKV
Sbjct: 181 VYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKKV 240

Query: 241 PPADSIPANEVVPVTSQ 257
           PPADSIPANEVVPVTSQ
Sbjct: 241 PPADSIPANEVVPVTSQ 257

[Close]

BLAST of Cp4.1LG02g06170 vs. NCBI nr
Match: XP_008452703.1 (PREDICTED: BRISC and BRCA1-A complex member 1 [Cucumis melo])

HSP 1 Score: 473 bits (1216), Expect = 2.23e-167
Identity = 234/257 (91.05%), Postives = 242/257 (94.16%), Query Frame = 0


Query: 1   MEGIEGERGGSRYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL 60
           ME IE ERGGS YSLKPSR+NNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL
Sbjct: 1   MEAIEVERGGSGYSLKPSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL 60

Query: 61  LFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSLF 120
           LFVHAKLSMNPDHRFAFTTIAKSA WLKK+FSSDIAS EAA+RGL  TS C+HADLTSLF
Sbjct: 61  LFVHAKLSMNPDHRFAFTTIAKSAIWLKKEFSSDIASAEAAVRGLGATSPCNHADLTSLF 120

Query: 121 RLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQE 180
           RLAAHE+RKSTAQN ILR+ILIYCRSSTRPQHQWP NQKLFT DVIYLHEKPGPDNCPQE
Sbjct: 121 RLAAHESRKSTAQNRILRLILIYCRSSTRPQHQWPANQKLFTFDVIYLHEKPGPDNCPQE 180

Query: 181 VYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKKV 240
           VYDALVDALD VSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDL+IPK LTKK+
Sbjct: 181 VYDALVDALDHVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKKL 240

Query: 241 PPADSIPANEVVPVTSQ 257
           PPADS P NEVVPVTSQ
Sbjct: 241 PPADSTPPNEVVPVTSQ 257

[Close]

BLAST of Cp4.1LG02g06170 vs. NCBI nr
Match: XP_038897935.1 (BRISC and BRCA1-A complex member 1 [Benincasa hispida])

HSP 1 Score: 470 bits (1210), Expect = 1.83e-166
Identity = 230/257 (89.49%), Postives = 244/257 (94.94%), Query Frame = 0


Query: 1   MEGIEGERGGSRYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL 60
           ME IE ERGGS YSLKPSR+N+EDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL
Sbjct: 1   MEAIEVERGGSGYSLKPSRLNSEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL 60

Query: 61  LFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSLF 120
           LFVHAKLSMNPDHRFAFTT+AKSA WLKK+FSSDIA+ EAA+RGL  T+ CSHADLTSLF
Sbjct: 61  LFVHAKLSMNPDHRFAFTTVAKSAIWLKKEFSSDIAAAEAAVRGLGATTPCSHADLTSLF 120

Query: 121 RLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQE 180
           R+AAHEARKSTAQN ILRVILIYCRSSTRPQHQWPVNQK+FT DVIYLHEKPGPDNCPQE
Sbjct: 121 RVAAHEARKSTAQNRILRVILIYCRSSTRPQHQWPVNQKVFTFDVIYLHEKPGPDNCPQE 180

Query: 181 VYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKKV 240
           VYDALVDALD VSQYEGYIFESGQG+AR+LYRCMCLLLSHPQQRISLDDL+IPK LTKK+
Sbjct: 181 VYDALVDALDHVSQYEGYIFESGQGIARILYRCMCLLLSHPQQRISLDDLDIPKPLTKKL 240

Query: 241 PPADSIPANEVVPVTSQ 257
           PPADS+PA EVVPVTSQ
Sbjct: 241 PPADSVPAAEVVPVTSQ 257

[Close]

BLAST of Cp4.1LG02g06170 vs. ExPASy TrEMBL
Match: A0A6J1FN80 (BRISC and BRCA1-A complex member 1 OS=Cucurbita moschata OX=3662 GN=LOC111446703 PE=3 SV=1)

HSP 1 Score: 516 bits (1329), Expect = 6.42e-185
Identity = 256/257 (99.61%), Postives = 257/257 (100.00%), Query Frame = 0


Query: 1   MEGIEGERGGSRYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL 60
           MEG+EGERGGSRYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL
Sbjct: 1   MEGMEGERGGSRYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL 60

Query: 61  LFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSLF 120
           LFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSLF
Sbjct: 61  LFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSLF 120

Query: 121 RLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQE 180
           RLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQE
Sbjct: 121 RLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQE 180

Query: 181 VYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKKV 240
           VYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKKV
Sbjct: 181 VYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKKV 240

Query: 241 PPADSIPANEVVPVTSQ 257
           PPADSIPANEVVPVTSQ
Sbjct: 241 PPADSIPANEVVPVTSQ 257

[Close]

BLAST of Cp4.1LG02g06170 vs. ExPASy TrEMBL
Match: A0A6J1J2J5 (BRISC and BRCA1-A complex member 1 OS=Cucurbita maxima OX=3661 GN=LOC111481237 PE=3 SV=1)

HSP 1 Score: 514 bits (1325), Expect = 2.62e-184
Identity = 255/257 (99.22%), Postives = 257/257 (100.00%), Query Frame = 0


Query: 1   MEGIEGERGGSRYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL 60
           MEGIEGERGGSRYSL+PSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL
Sbjct: 1   MEGIEGERGGSRYSLQPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL 60

Query: 61  LFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSLF 120
           LFVHAKLSMNPDHRFAFTTIAKSATWLK+DFSSDIASVEAAIRGLVPTSSCSHADLTSLF
Sbjct: 61  LFVHAKLSMNPDHRFAFTTIAKSATWLKRDFSSDIASVEAAIRGLVPTSSCSHADLTSLF 120

Query: 121 RLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQE 180
           RLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQE
Sbjct: 121 RLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQE 180

Query: 181 VYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKKV 240
           VYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKKV
Sbjct: 181 VYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKKV 240

Query: 241 PPADSIPANEVVPVTSQ 257
           PPADSIPANEVVPVTSQ
Sbjct: 241 PPADSIPANEVVPVTSQ 257

[Close]

BLAST of Cp4.1LG02g06170 vs. ExPASy TrEMBL
Match: A0A1S3BUH3 (BRISC and BRCA1-A complex member 1 OS=Cucumis melo OX=3656 GN=LOC103493644 PE=3 SV=1)

HSP 1 Score: 473 bits (1216), Expect = 1.08e-167
Identity = 234/257 (91.05%), Postives = 242/257 (94.16%), Query Frame = 0


Query: 1   MEGIEGERGGSRYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL 60
           ME IE ERGGS YSLKPSR+NNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL
Sbjct: 1   MEAIEVERGGSGYSLKPSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL 60

Query: 61  LFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSLF 120
           LFVHAKLSMNPDHRFAFTTIAKSA WLKK+FSSDIAS EAA+RGL  TS C+HADLTSLF
Sbjct: 61  LFVHAKLSMNPDHRFAFTTIAKSAIWLKKEFSSDIASAEAAVRGLGATSPCNHADLTSLF 120

Query: 121 RLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQE 180
           RLAAHE+RKSTAQN ILR+ILIYCRSSTRPQHQWP NQKLFT DVIYLHEKPGPDNCPQE
Sbjct: 121 RLAAHESRKSTAQNRILRLILIYCRSSTRPQHQWPANQKLFTFDVIYLHEKPGPDNCPQE 180

Query: 181 VYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKKV 240
           VYDALVDALD VSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDL+IPK LTKK+
Sbjct: 181 VYDALVDALDHVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKKL 240

Query: 241 PPADSIPANEVVPVTSQ 257
           PPADS P NEVVPVTSQ
Sbjct: 241 PPADSTPPNEVVPVTSQ 257

[Close]

BLAST of Cp4.1LG02g06170 vs. ExPASy TrEMBL
Match: A0A6J1CMH8 (BRISC and BRCA1-A complex member 1 OS=Momordica charantia OX=3673 GN=LOC111012487 PE=3 SV=1)

HSP 1 Score: 468 bits (1205), Expect = 5.13e-166
Identity = 230/257 (89.49%), Postives = 244/257 (94.94%), Query Frame = 0


Query: 1   MEGIEGERGGSRYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL 60
           ME IEG+RG SRYSLKPSRI+NEDILFCIDV+ ESS+EIKTTGSNGRPITRMDSIKQAIL
Sbjct: 1   MEAIEGDRGRSRYSLKPSRISNEDILFCIDVDSESSIEIKTTGSNGRPITRMDSIKQAIL 60

Query: 61  LFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSLF 120
           LFVHAKLS+NP+HRFAFTTIAKSA WLKK+FSSDI S EAA+RGL  TSSCSHADLTSLF
Sbjct: 61  LFVHAKLSINPEHRFAFTTIAKSAIWLKKEFSSDIPSTEAAVRGLSATSSCSHADLTSLF 120

Query: 121 RLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQE 180
           RLAAHEA+KSTAQN ILR+ILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQE
Sbjct: 121 RLAAHEAKKSTAQNRILRLILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQE 180

Query: 181 VYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKKV 240
           VYDALVDALD VSQYEGYIFESGQGVARVLYRCMCLLLSHP+QRISLDDL+IPK LTKK+
Sbjct: 181 VYDALVDALDHVSQYEGYIFESGQGVARVLYRCMCLLLSHPRQRISLDDLDIPKPLTKKL 240

Query: 241 PPADSIPANEVVPVTSQ 257
           PP DS+P NEVVPVTSQ
Sbjct: 241 PPTDSVPTNEVVPVTSQ 257

[Close]

BLAST of Cp4.1LG02g06170 vs. ExPASy TrEMBL
Match: A0A0A0L024 (BRISC and BRCA1-A complex member 1 OS=Cucumis sativus OX=3659 GN=Csa_4G645930 PE=3 SV=1)

HSP 1 Score: 467 bits (1201), Expect = 2.09e-165
Identity = 231/257 (89.88%), Postives = 241/257 (93.77%), Query Frame = 0


Query: 1   MEGIEGERGGSRYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL 60
           ME IE ERGGS YSLK SR+NNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL
Sbjct: 1   MEAIEVERGGSGYSLKSSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL 60

Query: 61  LFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSLF 120
           LFVHAKLSMNPDHRFAFTTIAKSA WLKK+FSSDIAS EAA+RGL  TS C+HADLTSLF
Sbjct: 61  LFVHAKLSMNPDHRFAFTTIAKSAIWLKKEFSSDIASAEAAVRGLGATSPCNHADLTSLF 120

Query: 121 RLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQE 180
           RLAAHE+RKSTAQN ILR+ILIYCRSST+PQHQWP NQKLFT DVIYLHEKPGPDNCPQE
Sbjct: 121 RLAAHESRKSTAQNRILRLILIYCRSSTQPQHQWPANQKLFTFDVIYLHEKPGPDNCPQE 180

Query: 181 VYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKKV 240
           VYDALVDALD VSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDL+IPK LTKK+
Sbjct: 181 VYDALVDALDHVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKKL 240

Query: 241 PPADSIPANEVVPVTSQ 257
           PPAD+ P NEVVPVTSQ
Sbjct: 241 PPADTAPPNEVVPVTSQ 257

[Close]

BLAST of Cp4.1LG02g06170 vs. TAIR 10
Match: AT4G32960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32970.1); Has 106 Blast hits to 106 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). )

HSP 1 Score: 334.7 bits (857), Expect = 6.4e-92
Identity = 159/240 (66.25%), Postives = 196/240 (81.67%), Query Frame = 0


Query: 9   GGSRYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLS 68
           G +RY+LKP RI +EDIL CIDV+ ES VE+KTTG+NGRP+ RM+ +KQAI+LF+H KLS
Sbjct: 12  GTTRYALKPGRIKSEDILICIDVDAESMVEMKTTGTNGRPLIRMECVKQAIILFIHNKLS 71

Query: 69  MNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSLFRLAAHEAR 128
           +NPDHRFAF T+AKSA WLKK+F+SD  S  A++RGL    S S ADLT LFR AA EA+
Sbjct: 72  INPDHRFAFATLAKSAAWLKKEFTSDAESAVASLRGLSGNKSSSRADLTLLFRAAAQEAK 131

Query: 129 KSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQEVYDALVDA 188
            S AQN I RVILIYCRSS RP H+WP+NQKLFTLDV+YLH+KP PDNCPQ+VYD+LVDA
Sbjct: 132 VSRAQNRIFRVILIYCRSSMRPTHEWPLNQKLFTLDVMYLHDKPSPDNCPQDVYDSLVDA 191

Query: 189 LDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKKVPPADSIPA 248
           ++ VS+YEGYIFESGQG+AR +++ M +LL+HPQQR + DDL+IP  L KKVP  ++  A
Sbjct: 192 VEHVSEYEGYIFESGQGLARSVFKPMSMLLTHPQQRCAQDDLDIPMSLAKKVPVTEAASA 251

[Close]

BLAST of Cp4.1LG02g06170 vs. TAIR 10
Match: AT4G32970.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32960.1); Has 552 Blast hits to 489 proteins in 85 species: Archae - 4; Bacteria - 14; Metazoa - 187; Fungi - 12; Plants - 225; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink). )

HSP 1 Score: 270.0 bits (689), Expect = 1.9e-72
Identity = 133/229 (58.08%), Postives = 172/229 (75.11%), Query Frame = 0


Query: 11  SRYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMN 70
           +R S++PS    EDIL C+DV+ ES+VE+KTTG+NG+P+ R++ +K AI  F+H KLS N
Sbjct: 14  TRDSVEPS----EDILICVDVDAESTVEMKTTGTNGKPLNRLECLKLAITRFIHDKLSRN 73

Query: 71  PDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSLFRLAAHEARKS 130
            DHRFAF T+++SA WLKK+FS+D  S  A++R +  T S   ADLT LF+ AA EA+ S
Sbjct: 74  SDHRFAFATLSQSAAWLKKEFSNDAKSAAASLREMSATRSSGPADLTFLFQEAAQEAKTS 133

Query: 131 TAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQEVYDALVDALD 190
            AQN ILRVIL+YCRSS RP H WP+NQKLFTLDV+YLH+K GPDNC  +VYD+LVDA++
Sbjct: 134 RAQNRILRVILMYCRSSVRPTHDWPINQKLFTLDVMYLHDKSGPDNCTHDVYDSLVDAIE 193

Query: 191 LVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKK 240
            VS+YEGYIFE   G+++ ++R M  LLSHP QR +  DL  PK   KK
Sbjct: 194 RVSEYEGYIFEGSHGLSQSVFRRMSTLLSHPPQRCAQVDL--PKPPAKK 236

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g06170 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG02g06170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023524345.1	4.63e-185	100.00	uncharacterized protein LOC111788267 [Cucurbita pepo subsp. pepo]	[more]
XP_022941399.1	1.33e-184	99.61	uncharacterized protein LOC111446703 [Cucurbita moschata] >KAG6608386.1 BRISC an...	[more]
XP_022982400.1	5.40e-184	99.22	uncharacterized protein LOC111481237 [Cucurbita maxima]	[more]
XP_008452703.1	2.23e-167	91.05	PREDICTED: BRISC and BRCA1-A complex member 1 [Cucumis melo]	[more]
XP_038897935.1	1.83e-166	89.49	BRISC and BRCA1-A complex member 1 [Benincasa hispida]	[more]

BLAST of Cp4.1LG02g06170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FN80	6.42e-185	99.61	BRISC and BRCA1-A complex member 1 OS=Cucurbita moschata OX=3662 GN=LOC111446703...	[more]
A0A6J1J2J5	2.62e-184	99.22	BRISC and BRCA1-A complex member 1 OS=Cucurbita maxima OX=3661 GN=LOC111481237 P...	[more]
A0A1S3BUH3	1.08e-167	91.05	BRISC and BRCA1-A complex member 1 OS=Cucumis melo OX=3656 GN=LOC103493644 PE=3 ...	[more]
A0A6J1CMH8	5.13e-166	89.49	BRISC and BRCA1-A complex member 1 OS=Momordica charantia OX=3673 GN=LOC11101248...	[more]
A0A0A0L024	2.09e-165	89.88	BRISC and BRCA1-A complex member 1 OS=Cucumis sativus OX=3659 GN=Csa_4G645930 PE...	[more]

BLAST of Cp4.1LG02g06170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32960.1	6.4e-92	66.25	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G32970.1	1.9e-72	58.08	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036465	von Willebrand factor A-like domain superfamily	GENE3D	3.40.50.410	von Willebrand factor, type A domain	coord: 23..164 e-value: 1.2E-6 score: 30.2
IPR036465	von Willebrand factor A-like domain superfamily	SUPERFAMILY	53300	vWA-like	coord: 25..142
IPR026126	BRISC and BRCA1-A complex member 1	PANTHER	PTHR15660	UNCHARACTERIZED	coord: 9..255
None	No IPR available	CDD	cd00198	vWFA	coord: 24..142 e-value: 1.01519E-5 score: 42.553

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g06170.1	Cp4.1LG02g06170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045739	positive regulation of DNA repair
cellular_component	GO:0070531	BRCA1-A complex
cellular_component	GO:0070552	BRISC complex