Cp4.1LG02g04710 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG02g04710
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionpentatricopeptide repeat-containing protein isoform X1
LocationCp4.1LG02: 2237409 .. 2239690 (+)
RNA-Seq ExpressionCp4.1LG02g04710
SyntenyCp4.1LG02g04710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CATGGCCGATGGTTAGCTTCTCTGTCTCATCGCCACTCATAACCACCGTCGGAGAAGATGCTACTGATCGCCTCATTATTCTATCCTCCATTGGCTTTATGCTTATCCGATTCCACGAACGTATCTTCTTGTCCGACTCCTTATCGCACGGCCACTGCCCGGCCGGGAAGACTCTCCTCGGAGTTCTAATCTCAAGCGGCTGACGTCTCTTGTCGTCCTACTCAGTCGCCGGAAGTAGCTCCACAAGGTTTTACTTGTTTATGTTGTATATTTACTTTAATTTTTACTCAACTCGACTGCTCGTTTTTGGAGTGCGAGGAAAAACACTTAAGGACTTAGTTTTTTTGCTCATGTTATTGCTTGCGGTTGTATGCGAAGTTTCAATATCATGCCGCGTCTGGACTAAGGGGAATCCGTTGATTTTCTTTCTCCTCTTCATTCTCATTGTTGGTAGCGTATGCGTTCTTATTAAATAAAATTATACGGTTTCGTATAACGGATTTGTGTGAAAAAAATATTTCGACGTCAGAAACTATGAGTGACGATTTCTATTGAAGTATATCCTTCTCGGAAATTGCATCAGTTTTTGGGTTTGAGTTTCATATTGTTCTTTAATTTTTCTCAGTTATTTGAGGAGATTGAAATTGCGAAGAGACTTTATGGAAAGTTGAATACAATTTTTTATGAATGCTGTCCTGGAAGCCTGTGCTCACTGCGGTGATATTGATTTAGCTCCGAAAAATTCCACTGAAATGTCCAAACCAAATAATTGTGGAGTAGACAATGTCAGTTATGGGACGCTATTGAAGGTAATAAATTAAAGCATTCTAAGTTTTAGATTCCTTGATGCATTGTTGTTGAGTCATGTGGGAAATCCGTCATTGTGACAGTTATATGGGAGAGTCGTGATTAGTTCTTGTTCCAGTTAAGTCTCAGTCTTTTCTCTGCCAGGGCTAGGGAGAAGCTAGAAAAGTTGACTAAGCAGTTTGATTATTTGAATCTGTGGAAGAAGGTACTGCTTTTGGAGGTCTAGCACTGTCGGCACCACTTATTATGGTCTTCTAAATGCTTTGACTGAACCAGGCCAGTTTCTACCGGAAGTCATTTCTTAAGCTGCTTACTGTACTTTATCTATGTTGGATGATGAAAGTCACACGTCGACTAATTTAGGGAATAATCATAGGTTTATAAACAAAGAATACTCTCTCCATTGGTATGAGGCCTTTTGGGGAAGCCCAAAGCAAAACCACGAGAGCTTATGCTCAAAGTGGACAATATCATATACCATTGTGAAGAGTCGTGTTCGTCTAACATGGTTTCAGAGCCATGCTCTAAACTTAGTCGTGCCAATAGATTGGTAAATCCTCAAATGTCGAACAAAGGACTCCAAAAGAAAAGGAGTCAAGCCTCCTCGAAGGCAGTAAAAAATGACTAAGACTCCAAAGGAGTCAAGCTTCGATTAAGAGAAGGCGTACTTTGGTAGAGGGGAGGTGTTGGATGATGAAAGTCCCACATCGGCTAATTTAGGGAATGATCATTTGGACAATATCATACCATTGTGGAGAGTCGTGTTCGTCTAATAATCTGCACTACAAAGCTCATAATAATGTCTCCAGTCCTGTAAGTTCAAATGCTTTATGGCAGCCACATTTCAATTGGAACAATTAAGCGTTGCAGTTAAATTTGGTTGATAGTGTAGTAGACTTATTTTTAGTTGTTAGTGGTATTAAAGAGTTTATGGGTGTATGTTTTAGTTTCTAGTTAGTGTTTATTTGGCTCGATAGATTTGGAAGCTTTTCTATGAATGATAGTATTGATGTGCAATCTCTTCAACGGAGAGAAGTTTCGGGCTTCTTTATGGTCTTTGGAGAGGAAAGTATAATCTCAAACAAGTTACTACTCATTTGATACTGTTTATATCCATCAAGAGCGATGCATATACCTTTGTTGTTTTACCAGTGGACACTGTATGTTTCTTCTTTAGCTACAATGGATGCATATAAGCTTCCAAATTAATTACGTTCTCATAGCCATAGGAGGATATTTACTCCCCCCACTGCTCATTCTGGTCTGACCCACAATAATTCATGCATGTTCTGAAATTTCCTTGAGTGGCTCATGCTCCTGTGGGGGTACCTAGCGCTACAAGTTTGTGCATCTTGATTCACTTTTCAGACATAGCCCTTCCATTCATCAATTGTAATACATTTTTTCTTTAGGGTTTTGGGATTCTGAAAGATGTCCATGTAGTTCACAAGATTGAACAGCATACACTGAAATGA

mRNA sequence

CATGGCCGATGGTTAGCTTCTCTGTCTCATCGCCACTCATAACCACCGTCGGAGAAGATGCTACTGATCGCCTCATTATTCTATCCTCCATTGGCTTTATGCTTATCCGATTCCACGAACGTATCTTCTTGTCCGACTCCTTATCGCACGGCCACTGCCCGGCCGGGAAGACTCTCCTCGGAGTTCTAATCTCAAGCGGCTGACGTCTCTTGTCGTCCTACTCAGTCGCCGGAAGTAGCTCCACAAGTTATTTGAGGAGATTGAAATTGCGAAGAGACTTTATGGAAAGTTGAATACAATTTTTTATGAATGCTGTCCTGGAAGCCTGTGCTCACTGCGGTGATATTGATTTAGCTCCGAAAAATTCCACTGAAATGTCCAAACCAAATAATTGTGGAGTAGACAATGTCAGTTATGGGACGCTATTGAAGTTAAGTCTCAGTCTTTTCTCTGCCAGGGCTAGGGAGAAGCTAGAAAAGTTGACTAAGCAGTTTGATTATTTGAATCTGTGGAAGAAGGGTTTTGGGATTCTGAAAGATGTCCATGTAGTTCACAAGATTGAACAGCATACACTGAAATGA

Coding sequence (CDS)

ATGAATGCTGTCCTGGAAGCCTGTGCTCACTGCGGTGATATTGATTTAGCTCCGAAAAATTCCACTGAAATGTCCAAACCAAATAATTGTGGAGTAGACAATGTCAGTTATGGGACGCTATTGAAGTTAAGTCTCAGTCTTTTCTCTGCCAGGGCTAGGGAGAAGCTAGAAAAGTTGACTAAGCAGTTTGATTATTTGAATCTGTGGAAGAAGGGTTTTGGGATTCTGAAAGATGTCCATGTAGTTCACAAGATTGAACAGCATACACTGAAATGA

Protein sequence

MNAVLEACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKLSLSLFSARAREKLEKLTKQFDYLNLWKKGFGILKDVHVVHKIEQHTLK
Homology
[Close]
BLAST of Cp4.1LG02g04710 vs. ExPASy Swiss-Prot
Match: Q8VYD6 (Pentatricopeptide repeat-containing protein At5g10690 OS=Arabidopsis thaliana OX=3702 GN=CBSPPR1 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.4e-08
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 0 

Query: 1   MNAVLEACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKLSLSLFSARAREKLEKLT 60
           MN+VLEAC HCG+IDLA +   EM++P   GVD++SY T+LK    L  AR  ++  ++ 
Sbjct: 80  MNSVLEACVHCGNIDLALRMFHEMAEPGGIGVDSISYATILK---GLGKARRIDEAFQML 139

Query: 61  KQFDY 66
           +  +Y
Sbjct: 140 ETIEY 141

[Close]
BLAST of Cp4.1LG02g04710 vs. NCBI nr
Match: KAG7037564.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 90.1 bits (222), Expect = 5.80e-21
Identity = 49/82 (59.76%), Postives = 49/82 (59.76%), Query Frame = 0 

Query: 6   EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKLSLSLFSARAREKLEKLTKQFDY 65
           EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLK                       
Sbjct: 59  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLK----------------------- 111

Query: 66  LNLWKKGFGILKDVHVVHKIEQ 87
                 GFGILKDVH   K EQ
Sbjct: 119 ------GFGILKDVHDEAKFEQ 111

[Close]
BLAST of Cp4.1LG02g04710 vs. NCBI nr
Match: KAG6608207.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.5 bits (197), Expect = 1.09e-15
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 0 

Query: 6   EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLK 42
           EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYG LLK
Sbjct: 254 EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGMLLK 290

[Close]
BLAST of Cp4.1LG02g04710 vs. NCBI nr
Match: XP_022140025.1 (pentatricopeptide repeat-containing protein At5g10690 isoform X2 [Momordica charantia])

HSP 1 Score: 75.9 bits (185), Expect = 1.34e-13
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 1   MNAVLEACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLK 42
           MNAVLEAC HCGDIDLA +   EMSKP+NCGVDNVSYGTLLK
Sbjct: 84  MNAVLEACVHCGDIDLALRTFYEMSKPDNCGVDNVSYGTLLK 125

[Close]
BLAST of Cp4.1LG02g04710 vs. NCBI nr
Match: XP_022139945.1 (pentatricopeptide repeat-containing protein At5g10690 isoform X1 [Momordica charantia])

HSP 1 Score: 75.9 bits (185), Expect = 1.34e-13
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 1   MNAVLEACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLK 42
           MNAVLEAC HCGDIDLA +   EMSKP+NCGVDNVSYGTLLK
Sbjct: 84  MNAVLEACVHCGDIDLALRTFYEMSKPDNCGVDNVSYGTLLK 125

[Close]
BLAST of Cp4.1LG02g04710 vs. NCBI nr
Match: KAE8651380.1 (hypothetical protein Csa_001485 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 1.68e-13
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 1   MNAVLEACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLK 42
           MNAVLEAC HCGDIDLA +   EMSKP+NCG+DNVSYGTLLK
Sbjct: 84  MNAVLEACVHCGDIDLALRTFNEMSKPDNCGLDNVSYGTLLK 125

[Close]
BLAST of Cp4.1LG02g04710 vs. ExPASy TrEMBL
Match: A0A6J1CDX0 (pentatricopeptide repeat-containing protein At5g10690 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111010707 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.46e-14
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 1   MNAVLEACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLK 42
           MNAVLEAC HCGDIDLA +   EMSKP+NCGVDNVSYGTLLK
Sbjct: 84  MNAVLEACVHCGDIDLALRTFYEMSKPDNCGVDNVSYGTLLK 125

[Close]
BLAST of Cp4.1LG02g04710 vs. ExPASy TrEMBL
Match: A0A6J1CDP2 (pentatricopeptide repeat-containing protein At5g10690 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111010707 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.49e-14
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 1   MNAVLEACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLK 42
           MNAVLEAC HCGDIDLA +   EMSKP+NCGVDNVSYGTLLK
Sbjct: 84  MNAVLEACVHCGDIDLALRTFYEMSKPDNCGVDNVSYGTLLK 125

[Close]
BLAST of Cp4.1LG02g04710 vs. ExPASy TrEMBL
Match: A0A6J1F9Q1 (pentatricopeptide repeat-containing protein At5g10690 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443370 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 8.82e-14
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 1   MNAVLEACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLK 42
           MNAVLEAC HCGDIDLA +   EMSKP+NCG+DNVSYGTLLK
Sbjct: 84  MNAVLEACVHCGDIDLALRTFNEMSKPDNCGLDNVSYGTLLK 125

[Close]
BLAST of Cp4.1LG02g04710 vs. ExPASy TrEMBL
Match: A0A0A0LHF8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881850 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 8.86e-14
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 1   MNAVLEACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLK 42
           MNAVLEAC HCGDIDLA +   EMSKP+NCG+DNVSYGTLLK
Sbjct: 84  MNAVLEACVHCGDIDLALRTFNEMSKPDNCGLDNVSYGTLLK 125

[Close]
BLAST of Cp4.1LG02g04710 vs. ExPASy TrEMBL
Match: A0A6J1FEL4 (pentatricopeptide repeat-containing protein At5g10690 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443370 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 8.86e-14
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 1   MNAVLEACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLK 42
           MNAVLEAC HCGDIDLA +   EMSKP+NCG+DNVSYGTLLK
Sbjct: 84  MNAVLEACVHCGDIDLALRTFNEMSKPDNCGLDNVSYGTLLK 125

[Close]
BLAST of Cp4.1LG02g04710 vs. TAIR 10
Match: AT5G10690.1 (pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein )

HSP 1 Score: 58.5 bits (140), Expect = 3.2e-09
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 0 

Query: 1   MNAVLEACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKLSLSLFSARAREKLEKLT 60
           MN+VLEAC HCG+IDLA +   EM++P   GVD++SY T+LK    L  AR  ++  ++ 
Sbjct: 80  MNSVLEACVHCGNIDLALRMFHEMAEPGGIGVDSISYATILK---GLGKARRIDEAFQML 139

Query: 61  KQFDY 66
           +  +Y
Sbjct: 140 ETIEY 141

The following BLAST results are available for this feature:
BLAST of Cp4.1LG02g04710 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8VYD64.4e-0844.62Pentatricopeptide repeat-containing protein At5g10690 OS=Arabidopsis thaliana OX... [more]
BLAST of Cp4.1LG02g04710 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7037564.15.80e-2159.76Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
KAG6608207.11.09e-1597.30Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
XP_022140025.11.34e-1383.33pentatricopeptide repeat-containing protein At5g10690 isoform X2 [Momordica char... [more]
XP_022139945.11.34e-1383.33pentatricopeptide repeat-containing protein At5g10690 isoform X1 [Momordica char... [more]
KAE8651380.11.68e-1380.95hypothetical protein Csa_001485 [Cucumis sativus][more]
BLAST of Cp4.1LG02g04710 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CDX06.46e-1483.33pentatricopeptide repeat-containing protein At5g10690 isoform X2 OS=Momordica ch... [more]
A0A6J1CDP26.49e-1483.33pentatricopeptide repeat-containing protein At5g10690 isoform X1 OS=Momordica ch... [more]
A0A6J1F9Q18.82e-1480.95pentatricopeptide repeat-containing protein At5g10690 isoform X2 OS=Cucurbita mo... [more]
A0A0A0LHF88.86e-1480.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881850 PE=4 SV=1[more]
A0A6J1FEL48.86e-1480.95pentatricopeptide repeat-containing protein At5g10690 isoform X1 OS=Cucurbita mo... [more]
BLAST of Cp4.1LG02g04710 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G10690.13.2e-0944.62pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protei... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR044781Pentatricopeptide repeat-containing protein At5g10690-likePANTHERPTHR47581OS09G0431600 PROTEINcoord: 1..42

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g04710.1Cp4.1LG02g04710.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003729 mRNA binding