Cp4.1LG02g03440 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG02g03440
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionethylene-responsive transcription factor RAP2-13-like
LocationCp4.1LG02: 3145427 .. 3147088 (+)
RNA-Seq ExpressionCp4.1LG02g03440
SyntenyCp4.1LG02g03440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGTTATAACAAAATTTGAAGGAAGAAATGTCAGGAGGGGATGAATTATTTGGCTGCAAAGCAAAACAAAGAGTAAAGTAATCAGTGAGTAAGTATGAACACGAGGGTTTTCTGGTCAACGAAACTTGGATGAACGTGATTATGAAGCTAAGCTATGGCGGATAATTGAGATTATTTTTATAACGCTCGTGAATTTTTGGAGGCTTATAAAAAGGGGATACGCCATTGTAGCCTGAGAAACAGAAACACACATAGAATTAAGCTTATAAGAAGAAGAGAAAAAAAAATATCAGTTTAAAGTTTGAAGTTCGTCGTTGTTGTTCTTGCTCCCCCTTCTGCAACTCCCCGCTTCTCTGAATCCCTTTCTGTTAATTATCTGTGCTTTTCAGGTTCTGATTTTTGGGTTTGTTTGTTTGTTCGTGATGAACAATAACCAAGCTTAGGATTGTGGAGAAGAACAGGTATTTTCAGAATCAAGATTCAGGATTTCTGTTTTTTATTTCAATTTAATGTGTTTTTGTGTTTAATCGAGAGATCAATCTGTTCTTGGAGGGTGAATTTTAGTCCCTCAAGGTTGGTTTTTCTTGTTAATTTTGTGTTCTGATATGAAGGGGTTCTTTATTTTGTTCAAATCCCTTTGATAATTCTTAGTTCGTGGCCTGTTTTCTTTCTATTTTAACAAGAATCAGGTTCCTCTGTAAACAAATCCTATCTTTTTTGTTCTTGAATTAATGGCAGCCGCCATGGATTTCTATAGTGAAGGATCTCAAACAGACCACTTTGGTGGTGAATTAATGGAAGCAATTGTACCTTTTATCAAAGTTGCTTCCTCCTCCTTCTCCTCCTCCTCCTCCTCTGTTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTCAATTTCTCTCACTCTGTTCCTCAACAGTGCTCTAATGGCTGCTCCACTTCGATGAACTCAGAATTTTCAAATGGGTTCTCGACCCAAACCCTTATTGGGTACGAACAGCCATCTCAAATCTTCCATTTCCAAACCCCATTACCTTTTGCTTATGGGAAACCAAGCGAACAGCTGAATCAACAAACGACGCCCATGTTCCTCTGCCCCAAGGCGATCCCGATGAAGCAAGTGGGTTCATCTTCAAAACCCACGAAGCTTTACAGAGGGGTAAGGCAACGGCATTGGGGGAAATGGGTGGCGGAGATCCGGCTGCCACGGAACCGAACTCGGCTCTGGCTTGGTACCTTCGACACTGCTGAAGAAGCTGCGTTGGCGTATGACAAGGCAGCCTTCAAGCTACGAGGGGACTCTGCCAGGCTCAATTTCCCGCACCTCAAGCACCAAGGCTCCTGTGTTGAAGGCGAGTTCGGTGCGTATAGGCCTTTACATTCCTCTGTTGATGCAAAGCTCCAAGCAATTTGTGATAACTTGGCTGCGCCGCCGCCCAAAGGCAGCTCAAACAAGTCAAGGTCCCAATCCTCCTCCTCCACGGTGGCGGAAGCGGCGGCTGTGAAGGTGGAGAGCGATGGGTCTGCAGGGTCTTCACCATTATCAGATCTTACATTCCCTGATTTCACAGAGCTGCCATGGGAACACAATCAAGCTTGGGAGAATTCAATGCTCGAGAAATATCCTTCTGAGATAGATTGGGCTTCGATCTTGCCTTAA

mRNA sequence

ATGAGACCGCCATGGATTTCTATAGTGAAGGATCTCAAACAGACCACTTTGGTGCTCCAAGCAATTTGTGATAACTTGGCTGCGCCGCCGCCCAAAGGCAGCTCAAACAAGTCAAGGTCCCAATCCTCCTCCTCCACGGTGGCGGAAGCGGCGGCTGTGAAGGTGGAGAGCGATGGGTCTGCAGGGTCTTCACCATTATCAGATCTTACATTCCCTGATTTCACAGAGCTGCCATGGGAACACAATCAAGCTTGGGAGAATTCAATGCTCGAGAAATATCCTTCTGAGATAGATTGGGCTTCGATCTTGCCTTAA

Coding sequence (CDS)

ATGAGACCGCCATGGATTTCTATAGTGAAGGATCTCAAACAGACCACTTTGGTGCTCCAAGCAATTTGTGATAACTTGGCTGCGCCGCCGCCCAAAGGCAGCTCAAACAAGTCAAGGTCCCAATCCTCCTCCTCCACGGTGGCGGAAGCGGCGGCTGTGAAGGTGGAGAGCGATGGGTCTGCAGGGTCTTCACCATTATCAGATCTTACATTCCCTGATTTCACAGAGCTGCCATGGGAACACAATCAAGCTTGGGAGAATTCAATGCTCGAGAAATATCCTTCTGAGATAGATTGGGCTTCGATCTTGCCTTAA

Protein sequence

MRPPWISIVKDLKQTTLVLQAICDNLAAPPPKGSSNKSRSQSSSSTVAEAAAVKVESDGSAGSSPLSDLTFPDFTELPWEHNQAWENSMLEKYPSEIDWASILP
Homology
[Close]
BLAST of Cp4.1LG02g03440 vs. ExPASy Swiss-Prot
Match: Q9LM15 (Ethylene-responsive transcription factor RAP2-13 OS=Arabidopsis thaliana OX=3702 GN=RAP2-13 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.3e-07
Identity = 47/100 (47.00%), Postives = 55/100 (55.00%), Query Frame = 0 

Query: 19  LQAICDNLAAPPPK--GSSNKSRSQSSSSTV-----------AEAAAVKVESDGSAG-SS 78
           L+AIC NLA    K   S+ KS S+  SSTV           A ++ +  ES GS G SS
Sbjct: 158 LEAICQNLAETTQKQVRSTKKSSSRKRSSTVAVKLPEEDYSSAGSSPLLTESYGSGGSSS 217

Query: 79  PLSDLTFPDFTELPWEHNQAWENSMLEKYPS-EIDWASIL 104
           PLS+LTF D  E   E    W  + LEKYPS EIDW SIL
Sbjct: 218 PLSELTFGDTEE---EIQPPWNENALEKYPSYEIDWDSIL 254

[Close]
BLAST of Cp4.1LG02g03440 vs. ExPASy Swiss-Prot
Match: Q8H1E4 (Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana OX=3702 GN=RAP2-4 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.5e-04
Identity = 39/103 (37.86%), Postives = 52/103 (50.49%), Query Frame = 0 

Query: 19  LQAICDNLAAPPPKGSSNKS-----------------RSQSSSSTVAEAAAVKVESDGSA 78
           L+AIC ++A    +  S KS                 +++ +S ++  +  V    + +A
Sbjct: 235 LEAICKSMAETQKQDKSTKSSKKREKKVSSPDLSEKVKAEENSVSIGGSPPVTEFEESTA 294

Query: 79  GSSPLSDLTFPDFTELPWEHNQAWENSMLEKYPS-EIDWASIL 104
           GSSPLSDLTF D    P E  Q  E   LEKYPS EIDW SIL
Sbjct: 295 GSSPLSDLTFAD----PEEPPQWNETFSLEKYPSYEIDWDSIL 333

[Close]
BLAST of Cp4.1LG02g03440 vs. NCBI nr
Match: XP_023523428.1 (ethylene-responsive transcription factor RAP2-4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172 bits (435), Expect = 1.19e-50
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 19  LQAICDNLAAPPPKGSSNKSRSQSSSSTVAEAAAVKVESDGSAGSSPLSDLTFPDFTELP 78
           LQAICDNLAAPPPKGSSNKSRSQSSSSTVAEAAAVKVESDGSAGSSPLSDLTFPDFTELP
Sbjct: 223 LQAICDNLAAPPPKGSSNKSRSQSSSSTVAEAAAVKVESDGSAGSSPLSDLTFPDFTELP 282

Query: 79  WEHNQAWENSMLEKYPSEIDWASILP 104
           WEHNQAWENSMLEKYPSEIDWASILP
Sbjct: 283 WEHNQAWENSMLEKYPSEIDWASILP 308

[Close]
BLAST of Cp4.1LG02g03440 vs. NCBI nr
Match: KAG7031705.1 (Ethylene-responsive transcription factor RAP2-4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 168 bits (425), Expect = 3.25e-49
Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 0 

Query: 19  LQAICDNLAAPPPKGSSNKSRSQSSSSTVAEAAAVKVESDGSAGSSPLSDLTFPDFTELP 78
           LQAICDNLAAPPPKGSS KSRSQSSSSTV EAAAVKVESDGSAGSSPLSDLTFPDFTELP
Sbjct: 217 LQAICDNLAAPPPKGSSKKSRSQSSSSTVVEAAAVKVESDGSAGSSPLSDLTFPDFTELP 276

Query: 79  WEHNQAWENSMLEKYPSEIDWASILP 104
           WEHNQAWENSMLEKYPSEIDWASILP
Sbjct: 277 WEHNQAWENSMLEKYPSEIDWASILP 302

[Close]
BLAST of Cp4.1LG02g03440 vs. NCBI nr
Match: XP_022941105.1 (ethylene-responsive transcription factor RAP2-13-like [Cucurbita moschata])

HSP 1 Score: 168 bits (425), Expect = 3.34e-49
Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 0 

Query: 19  LQAICDNLAAPPPKGSSNKSRSQSSSSTVAEAAAVKVESDGSAGSSPLSDLTFPDFTELP 78
           LQAICDNLAAPPPKGSS KSRSQSSSSTV EAAAVKVESDGSAGSSPLSDLTFPDFTELP
Sbjct: 218 LQAICDNLAAPPPKGSSKKSRSQSSSSTVVEAAAVKVESDGSAGSSPLSDLTFPDFTELP 277

Query: 79  WEHNQAWENSMLEKYPSEIDWASILP 104
           WEHNQAWENSMLEKYPSEIDWASILP
Sbjct: 278 WEHNQAWENSMLEKYPSEIDWASILP 303

[Close]
BLAST of Cp4.1LG02g03440 vs. NCBI nr
Match: KAG6608072.1 (Ethylene-responsive transcription factor RAP2-4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 168 bits (425), Expect = 3.81e-49
Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 0 

Query: 19  LQAICDNLAAPPPKGSSNKSRSQSSSSTVAEAAAVKVESDGSAGSSPLSDLTFPDFTELP 78
           LQAICDNLAAPPPKGSS KSRSQSSSSTV EAAAVKVESDGSAGSSPLSDLTFPDFTELP
Sbjct: 223 LQAICDNLAAPPPKGSSKKSRSQSSSSTVVEAAAVKVESDGSAGSSPLSDLTFPDFTELP 282

Query: 79  WEHNQAWENSMLEKYPSEIDWASILP 104
           WEHNQAWENSMLEKYPSEIDWASILP
Sbjct: 283 WEHNQAWENSMLEKYPSEIDWASILP 308

[Close]
BLAST of Cp4.1LG02g03440 vs. NCBI nr
Match: XP_022981034.1 (ethylene-responsive transcription factor RAP2-13-like [Cucurbita maxima])

HSP 1 Score: 164 bits (416), Expect = 8.17e-48
Identity = 83/86 (96.51%), Postives = 84/86 (97.67%), Query Frame = 0 

Query: 19  LQAICDNLAAPPPKGSSNKSRSQSSSSTVAEAAAVKVESDGSAGSSPLSDLTFPDFTELP 78
           LQAICDNLAAPP KG+S KSRSQSSSSTVAEAAAVKVESDGSAGSSPLSDLTFPDFTELP
Sbjct: 220 LQAICDNLAAPPLKGNSKKSRSQSSSSTVAEAAAVKVESDGSAGSSPLSDLTFPDFTELP 279

Query: 79  WEHNQAWENSMLEKYPSEIDWASILP 104
           WEHNQAWENSMLEKYPSEIDWASILP
Sbjct: 280 WEHNQAWENSMLEKYPSEIDWASILP 305

[Close]
BLAST of Cp4.1LG02g03440 vs. ExPASy TrEMBL
Match: A0A6J1FSL1 (ethylene-responsive transcription factor RAP2-13-like OS=Cucurbita moschata OX=3662 GN=LOC111446503 PE=4 SV=1)

HSP 1 Score: 168 bits (425), Expect = 1.62e-49
Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 0 

Query: 19  LQAICDNLAAPPPKGSSNKSRSQSSSSTVAEAAAVKVESDGSAGSSPLSDLTFPDFTELP 78
           LQAICDNLAAPPPKGSS KSRSQSSSSTV EAAAVKVESDGSAGSSPLSDLTFPDFTELP
Sbjct: 218 LQAICDNLAAPPPKGSSKKSRSQSSSSTVVEAAAVKVESDGSAGSSPLSDLTFPDFTELP 277

Query: 79  WEHNQAWENSMLEKYPSEIDWASILP 104
           WEHNQAWENSMLEKYPSEIDWASILP
Sbjct: 278 WEHNQAWENSMLEKYPSEIDWASILP 303

[Close]
BLAST of Cp4.1LG02g03440 vs. ExPASy TrEMBL
Match: A0A6J1J0W5 (ethylene-responsive transcription factor RAP2-13-like OS=Cucurbita maxima OX=3661 GN=LOC111480304 PE=4 SV=1)

HSP 1 Score: 164 bits (416), Expect = 3.96e-48
Identity = 83/86 (96.51%), Postives = 84/86 (97.67%), Query Frame = 0 

Query: 19  LQAICDNLAAPPPKGSSNKSRSQSSSSTVAEAAAVKVESDGSAGSSPLSDLTFPDFTELP 78
           LQAICDNLAAPP KG+S KSRSQSSSSTVAEAAAVKVESDGSAGSSPLSDLTFPDFTELP
Sbjct: 220 LQAICDNLAAPPLKGNSKKSRSQSSSSTVAEAAAVKVESDGSAGSSPLSDLTFPDFTELP 279

Query: 79  WEHNQAWENSMLEKYPSEIDWASILP 104
           WEHNQAWENSMLEKYPSEIDWASILP
Sbjct: 280 WEHNQAWENSMLEKYPSEIDWASILP 305

[Close]
BLAST of Cp4.1LG02g03440 vs. ExPASy TrEMBL
Match: A0A6J1IP87 (ethylene-responsive transcription factor RAP2-13-like OS=Cucurbita maxima OX=3661 GN=LOC111477331 PE=4 SV=1)

HSP 1 Score: 119 bits (298), Expect = 4.22e-30
Identity = 65/100 (65.00%), Postives = 74/100 (74.00%), Query Frame = 0 

Query: 19  LQAICDNLAAPPPKGSSNK-----SRSQSSSSTVAEAAAVKVE---------SDGSAGSS 78
           LQAICDNLA P  +G+S K      +S+S S ++A+ AAVKVE         SDGSA SS
Sbjct: 254 LQAICDNLAKPQKQGNSKKPVTAAKKSRSQSCSIADIAAVKVENSSSRAVTESDGSAASS 313

Query: 79  PLSDLTFPDFTELPWEHNQAWENSMLEKYPSEIDWASILP 104
           PLSDL+FPDFTELPW+ N AWE SMLEKYPSEIDWASILP
Sbjct: 314 PLSDLSFPDFTELPWDQNLAWETSMLEKYPSEIDWASILP 353

[Close]
BLAST of Cp4.1LG02g03440 vs. ExPASy TrEMBL
Match: A0A6J1F9S6 (ethylene-responsive transcription factor RAP2-13-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443577 PE=4 SV=1)

HSP 1 Score: 118 bits (295), Expect = 1.16e-29
Identity = 64/100 (64.00%), Postives = 74/100 (74.00%), Query Frame = 0 

Query: 19  LQAICDNLAAPPPKGSSNK-----SRSQSSSSTVAEAAAVKVE---------SDGSAGSS 78
           LQAICDNLA P  +G+S K      +S+S S ++A+ AAVKVE         SDGSA SS
Sbjct: 254 LQAICDNLAKPQKQGNSKKPVTAAKKSRSQSCSLADTAAVKVENSSSRAVTESDGSAASS 313

Query: 79  PLSDLTFPDFTELPWEHNQAWENSMLEKYPSEIDWASILP 104
           PLSDL+FPDFTE+PW+ N AWE SMLEKYPSEIDWASILP
Sbjct: 314 PLSDLSFPDFTEMPWDQNLAWETSMLEKYPSEIDWASILP 353

[Close]
BLAST of Cp4.1LG02g03440 vs. ExPASy TrEMBL
Match: A0A6J1FFZ4 (ethylene-responsive transcription factor RAP2-13-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443577 PE=4 SV=1)

HSP 1 Score: 118 bits (295), Expect = 1.39e-29
Identity = 64/100 (64.00%), Postives = 74/100 (74.00%), Query Frame = 0 

Query: 19  LQAICDNLAAPPPKGSSNK-----SRSQSSSSTVAEAAAVKVE---------SDGSAGSS 78
           LQAICDNLA P  +G+S K      +S+S S ++A+ AAVKVE         SDGSA SS
Sbjct: 265 LQAICDNLAKPQKQGNSKKPVTAAKKSRSQSCSLADTAAVKVENSSSRAVTESDGSAASS 324

Query: 79  PLSDLTFPDFTELPWEHNQAWENSMLEKYPSEIDWASILP 104
           PLSDL+FPDFTE+PW+ N AWE SMLEKYPSEIDWASILP
Sbjct: 325 PLSDLSFPDFTEMPWDQNLAWETSMLEKYPSEIDWASILP 364

[Close]
BLAST of Cp4.1LG02g03440 vs. TAIR 10
Match: AT1G22190.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 55.5 bits (132), Expect = 3.1e-08
Identity = 47/100 (47.00%), Postives = 55/100 (55.00%), Query Frame = 0 

Query: 19  LQAICDNLAAPPPK--GSSNKSRSQSSSSTV-----------AEAAAVKVESDGSAG-SS 78
           L+AIC NLA    K   S+ KS S+  SSTV           A ++ +  ES GS G SS
Sbjct: 158 LEAICQNLAETTQKQVRSTKKSSSRKRSSTVAVKLPEEDYSSAGSSPLLTESYGSGGSSS 217

Query: 79  PLSDLTFPDFTELPWEHNQAWENSMLEKYPS-EIDWASIL 104
           PLS+LTF D  E   E    W  + LEKYPS EIDW SIL
Sbjct: 218 PLSELTFGDTEE---EIQPPWNENALEKYPSYEIDWDSIL 254

[Close]
BLAST of Cp4.1LG02g03440 vs. TAIR 10
Match: AT1G78080.1 (related to AP2 4 )

HSP 1 Score: 47.0 bits (110), Expect = 1.1e-05
Identity = 39/103 (37.86%), Postives = 52/103 (50.49%), Query Frame = 0 

Query: 19  LQAICDNLAAPPPKGSSNKS-----------------RSQSSSSTVAEAAAVKVESDGSA 78
           L+AIC ++A    +  S KS                 +++ +S ++  +  V    + +A
Sbjct: 235 LEAICKSMAETQKQDKSTKSSKKREKKVSSPDLSEKVKAEENSVSIGGSPPVTEFEESTA 294

Query: 79  GSSPLSDLTFPDFTELPWEHNQAWENSMLEKYPS-EIDWASIL 104
           GSSPLSDLTF D    P E  Q  E   LEKYPS EIDW SIL
Sbjct: 295 GSSPLSDLTFAD----PEEPPQWNETFSLEKYPSYEIDWDSIL 333

The following BLAST results are available for this feature:
BLAST of Cp4.1LG02g03440 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LM154.3e-0747.00Ethylene-responsive transcription factor RAP2-13 OS=Arabidopsis thaliana OX=3702... [more]
Q8H1E41.5e-0437.86Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana OX=3702 ... [more]
BLAST of Cp4.1LG02g03440 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023523428.11.19e-50100.00ethylene-responsive transcription factor RAP2-4-like [Cucurbita pepo subsp. pepo... [more]
KAG7031705.13.25e-4997.67Ethylene-responsive transcription factor RAP2-4, partial [Cucurbita argyrosperma... [more]
XP_022941105.13.34e-4997.67ethylene-responsive transcription factor RAP2-13-like [Cucurbita moschata][more]
KAG6608072.13.81e-4997.67Ethylene-responsive transcription factor RAP2-4, partial [Cucurbita argyrosperma... [more]
XP_022981034.18.17e-4896.51ethylene-responsive transcription factor RAP2-13-like [Cucurbita maxima][more]
BLAST of Cp4.1LG02g03440 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FSL11.62e-4997.67ethylene-responsive transcription factor RAP2-13-like OS=Cucurbita moschata OX=3... [more]
A0A6J1J0W53.96e-4896.51ethylene-responsive transcription factor RAP2-13-like OS=Cucurbita maxima OX=366... [more]
A0A6J1IP874.22e-3065.00ethylene-responsive transcription factor RAP2-13-like OS=Cucurbita maxima OX=366... [more]
A0A6J1F9S61.16e-2964.00ethylene-responsive transcription factor RAP2-13-like isoform X2 OS=Cucurbita mo... [more]
A0A6J1FFZ41.39e-2964.00ethylene-responsive transcription factor RAP2-13-like isoform X1 OS=Cucurbita mo... [more]
BLAST of Cp4.1LG02g03440 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G22190.13.1e-0847.00Integrase-type DNA-binding superfamily protein [more]
AT1G78080.11.1e-0537.86related to AP2 4 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..50

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g03440.1Cp4.1LG02g03440.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0043565 sequence-specific DNA binding