Cp4.1LG02g02330 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g02330
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Biogenesis of lysosome-related organelles complex 1 subunit 7
Location	Cp4.1LG02: 3844275 .. 3845438 (-)
RNA-Seq Expression	Cp4.1LG02g02330
Synteny	Cp4.1LG02g02330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TNGGTTAATCTCGCGGAATTTTTCATATCATGGAGTTATGGCCTCAAATTTGTTTTTGAAAAAATCTAGTGATCTCGGTTCAAGAATTCCAGAAATCGAGCATTTCGTTCGTCGTGCATTGTTGTTTATTGTTCCAATATTATCGTAGCATTTGGTGTCGATTTTTCTTCTTCCAGACATCTCTTAATATTTTCAGTTTCTTGCTTCATTGATCACTTTTCTTGAGGCAAAATTAGAGCAGAGTAATTGTTTGTTGCTCGGCATTGACTAGTTTCTGTTCTGGTCTTCAAGATTTCGCGATTGAAACTGCATATTAGTTCCGTTTCAATTGTAGTAGCTGCGATCTTAACTTTATGGTGTTTCTAGACACTTATTAGATGCTGAAATCGTGGAAGCTATTTTCATTTTATCTTTGTTGTCTCACATTATTGACGCACTATACTGGTAGCTAACGAACTTACAGATGGGCGATTTTCACTGTGAATAATGAACTTGGTGATCTCTTTCAGAAATTGCAAGGGATGCACAGTCTGGAGAAAGTGCACGATGATTCTGCCAACAAGGACAGCAAAGTCTCTGCTGAATTGGAGCCTTCTATTAGTCCAAATGGTGATATCGAGGAAGAAAATGAGATTGCAAATATGAATTTGGGAGACTCTAATGCTCTAGCAAATGGGCTCTCTTCCATGCTTATGAACATCATGAGGGATTTTGACTCCAAAGCTGATGATACTCTTAAAAGCCAAAGCCAGCTTTCATTTTCCCTTGACCGACTTACTTCAGGTAGGATTACATTTACTTTGTTTTATTAGTTTTATCATATAAAATAGAATTTCTTCCTTTGTCCAGTAATATAGTTTAGGGGAAGTGTATAGGTAAATGATATTCTCTCATAATTTACCTTTTTTCTTGCCATAGATGCAAAAATGAAGCTTCTGAGTTTCATGGTTTTTTCAATGGTATAAAAAGATATTATTTTAACTTTTAACAGAACTGGATCAATTACTTGAAGATGCTCCTTTTCCATTCATCATGCAGCATGCCTTGAGGATTTCTAGTGTAAGAAAGAGAGTGTTGTCTCTAAATTCCATCTTAAGATCCGTACAACGAAGAGTAGATAACATAGATCGGGCGATCTCGATGAGTAATTTACCAGGTGATTGA

mRNA sequence

TNGGTTAATCTCGCGGAATTTTTCATATCATGGAGTTATGGCCTCAAATTTGTTTTTGAAAAAATCTAGTGATCTCGGTTCAAGAATTCCAGAAATCGAGCATTTCGTTCGTCGTGCATTGTTGTTTATTGTTCCAATATTATCGTAGCATTTGGTGTCGATTTTTCTTCTTCCAGACATCTCTTAATATTTTCAGTTTCTTGCTTCATTGATCACTTTTCTTGAGGCAAAATTAGAGCAGAGTAATTGTTTGTTGCTCGGCATTGACTAGTTTCTGTTCTGGTCTTCAAGATTTCGCGATTGAAACTGCATATTAGTTCCGTTTCAATTGTAGTAGCTGCGATCTTAACTTTATGGTGTTTCTAGACACTTATTAGATGCTGAAATCGTGGAAGCTATTTTCATTTTATCTTTGTTGTCTCACATTATTGACGCACTATACTGGTAGCTAACGAACTTACAGATGGGCGATTTTCACTGTGAATAATGAACTTGGTGATCTCTTTCAGAAATTGCAAGGGATGCACAGTCTGGAGAAAGTGCACGATGATTCTGCCAACAAGGACAGCAAAGTCTCTGCTGAATTGGAGCCTTCTATTAGTCCAAATGGTGATATCGAGGAAGAAAATGAGATTGCAAATATGAATTTGGGAGACTCTAATGCTCTAGCAAATGGGCTCTCTTCCATGCTTATGAACATCATGAGGGATTTTGACTCCAAAGCTGATGATACTCTTAAAAGCCAAAGCCAGCTTTCATTTTCCCTTGACCGACTTACTTCAGAACTGGATCAATTACTTGAAGATGCTCCTTTTCCATTCATCATGCAGCATGCCTTGAGGATTTCTAGTGTAAGAAAGAGAGTGTTGTCTCTAAATTCCATCTTAAGATCCGTACAACGAAGAGTAGATAACATAGATCGGGCGATCTCGATGAGTAATTTACCAGGTGATTGA

Coding sequence (CDS)

ATGCACAGTCTGGAGAAAGTGCACGATGATTCTGCCAACAAGGACAGCAAAGTCTCTGCTGAATTGGAGCCTTCTATTAGTCCAAATGGTGATATCGAGGAAGAAAATGAGATTGCAAATATGAATTTGGGAGACTCTAATGCTCTAGCAAATGGGCTCTCTTCCATGCTTATGAACATCATGAGGGATTTTGACTCCAAAGCTGATGATACTCTTAAAAGCCAAAGCCAGCTTTCATTTTCCCTTGACCGACTTACTTCAGAACTGGATCAATTACTTGAAGATGCTCCTTTTCCATTCATCATGCAGCATGCCTTGAGGATTTCTAGTGTAAGAAAGAGAGTGTTGTCTCTAAATTCCATCTTAAGATCCGTACAACGAAGAGTAGATAACATAGATCGGGCGATCTCGATGAGTAATTTACCAGGTGATTGA

Protein sequence

MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENEIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRAISMSNLPGD

Homology

[Close]

BLAST of Cp4.1LG02g02330 vs. NCBI nr
Match: XP_023523877.1 (uncharacterized protein LOC111787988 [Cucurbita pepo subsp. pepo] >XP_023523879.1 uncharacterized protein LOC111787988 [Cucurbita pepo subsp. pepo] >XP_023523880.1 uncharacterized protein LOC111787988 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 264 bits (674), Expect = 2.68e-88
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENEIANMNLGDSNALANGLSSMLMNI 60
           MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENEIANMNLGDSNALANGLSSMLMNI
Sbjct: 1   MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENEIANMNLGDSNALANGLSSMLMNI 60

Query: 61  MRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLNS 120
           MRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLNS
Sbjct: 61  MRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLNS 120

Query: 121 ILRSVQRRVDNIDRAISMSNLP 142
           ILRSVQRRVDNIDRAISMSNLP
Sbjct: 121 ILRSVQRRVDNIDRAISMSNLP 142

[Close]

BLAST of Cp4.1LG02g02330 vs. NCBI nr
Match: XP_022940122.1 (uncharacterized protein LOC111445840 isoform X2 [Cucurbita moschata])

HSP 1 Score: 261 bits (667), Expect = 3.13e-87
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 1   MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENEIANMNLGDSNALANGLSSMLMNI 60
           MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEEN+IANMNLGDSNALANGLSSMLMNI
Sbjct: 1   MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNI 60

Query: 61  MRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLNS 120
           MRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLNS
Sbjct: 61  MRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLNS 120

Query: 121 ILRSVQRRVDNIDRAISMSNLP 142
           ILRSVQRRVDNIDR ISMSNLP
Sbjct: 121 ILRSVQRRVDNIDRVISMSNLP 142

[Close]

BLAST of Cp4.1LG02g02330 vs. NCBI nr
Match: XP_022940121.1 (uncharacterized protein LOC111445840 isoform X1 [Cucurbita moschata])

HSP 1 Score: 261 bits (667), Expect = 3.23e-87
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 1   MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENEIANMNLGDSNALANGLSSMLMNI 60
           MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEEN+IANMNLGDSNALANGLSSMLMNI
Sbjct: 1   MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNI 60

Query: 61  MRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLNS 120
           MRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLNS
Sbjct: 61  MRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLNS 120

Query: 121 ILRSVQRRVDNIDRAISMSNLP 142
           ILRSVQRRVDNIDR ISMSNLP
Sbjct: 121 ILRSVQRRVDNIDRVISMSNLP 142

[Close]

BLAST of Cp4.1LG02g02330 vs. NCBI nr
Match: XP_022981117.1 (uncharacterized protein LOC111480361 [Cucurbita maxima] >XP_022981118.1 uncharacterized protein LOC111480361 [Cucurbita maxima] >XP_022981119.1 uncharacterized protein LOC111480361 [Cucurbita maxima])

HSP 1 Score: 253 bits (646), Expect = 6.51e-84
Identity = 136/142 (95.77%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENEIANMNLGDSNALANGLSSMLMNI 60
           MHSLEKVHDDSANKDSKVSAELEPSISPNGD E+EN+IA MNLG+SNALANGLSSML NI
Sbjct: 1   MHSLEKVHDDSANKDSKVSAELEPSISPNGDFEKENDIAKMNLGNSNALANGLSSMLKNI 60

Query: 61  MRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLNS 120
           MRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLNS
Sbjct: 61  MRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLNS 120

Query: 121 ILRSVQRRVDNIDRAISMSNLP 142
           ILRSVQRRVDNIDRAISMSNLP
Sbjct: 121 ILRSVQRRVDNIDRAISMSNLP 142

[Close]

BLAST of Cp4.1LG02g02330 vs. NCBI nr
Match: XP_038897522.1 (uncharacterized protein LOC120085558 isoform X6 [Benincasa hispida])

HSP 1 Score: 212 bits (540), Expect = 4.89e-68
Identity = 116/145 (80.00%), Postives = 131/145 (90.34%), Query Frame = 0


Query: 1   MHSLEKVHDD-SANKDSKVSAELEPSISPNGDIEEENEIANMNLGDSNALANGLSSMLMN 60
           MHS EK+  D SAN++S V +ELE SISPNGD++E N+  N NLG+SNALANGLSSML+N
Sbjct: 1   MHSPEKLDGDYSANEESNVLSELETSISPNGDLQEGNDSENKNLGNSNALANGLSSMLIN 60

Query: 61  IMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLN 120
           I+RDFDSKADDTLKSQSQLS SLDRLT+ELDQLLEDAPFPFIMQHA RIS+VRKRVLSLN
Sbjct: 61  IIRDFDSKADDTLKSQSQLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRKRVLSLN 120

Query: 121 SILRSVQRRVDNIDRAISMSNLPGD 144
           SILR++QRRVDNIDRAISM NLPG+
Sbjct: 121 SILRTIQRRVDNIDRAISMGNLPGN 145

[Close]

BLAST of Cp4.1LG02g02330 vs. ExPASy TrEMBL
Match: A0A6J1FIR1 (Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita moschata OX=3662 GN=LOC111445840 PE=3 SV=1)

HSP 1 Score: 261 bits (667), Expect = 1.51e-87
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 1   MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENEIANMNLGDSNALANGLSSMLMNI 60
           MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEEN+IANMNLGDSNALANGLSSMLMNI
Sbjct: 1   MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNI 60

Query: 61  MRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLNS 120
           MRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLNS
Sbjct: 61  MRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLNS 120

Query: 121 ILRSVQRRVDNIDRAISMSNLP 142
           ILRSVQRRVDNIDR ISMSNLP
Sbjct: 121 ILRSVQRRVDNIDRVISMSNLP 142

[Close]

BLAST of Cp4.1LG02g02330 vs. ExPASy TrEMBL
Match: A0A6J1FHK0 (Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita moschata OX=3662 GN=LOC111445840 PE=3 SV=1)

HSP 1 Score: 261 bits (667), Expect = 1.57e-87
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 1   MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENEIANMNLGDSNALANGLSSMLMNI 60
           MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEEN+IANMNLGDSNALANGLSSMLMNI
Sbjct: 1   MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNI 60

Query: 61  MRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLNS 120
           MRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLNS
Sbjct: 61  MRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLNS 120

Query: 121 ILRSVQRRVDNIDRAISMSNLP 142
           ILRSVQRRVDNIDR ISMSNLP
Sbjct: 121 ILRSVQRRVDNIDRVISMSNLP 142

[Close]

BLAST of Cp4.1LG02g02330 vs. ExPASy TrEMBL
Match: A0A6J1J178 (Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita maxima OX=3661 GN=LOC111480361 PE=3 SV=1)

HSP 1 Score: 253 bits (646), Expect = 3.15e-84
Identity = 136/142 (95.77%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENEIANMNLGDSNALANGLSSMLMNI 60
           MHSLEKVHDDSANKDSKVSAELEPSISPNGD E+EN+IA MNLG+SNALANGLSSML NI
Sbjct: 1   MHSLEKVHDDSANKDSKVSAELEPSISPNGDFEKENDIAKMNLGNSNALANGLSSMLKNI 60

Query: 61  MRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLNS 120
           MRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLNS
Sbjct: 61  MRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLNS 120

Query: 121 ILRSVQRRVDNIDRAISMSNLP 142
           ILRSVQRRVDNIDRAISMSNLP
Sbjct: 121 ILRSVQRRVDNIDRAISMSNLP 142

[Close]

BLAST of Cp4.1LG02g02330 vs. ExPASy TrEMBL
Match: A0A6J1IKP2 (Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita maxima OX=3661 GN=LOC111477110 PE=3 SV=1)

HSP 1 Score: 212 bits (540), Expect = 3.40e-68
Identity = 115/142 (80.99%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 1   MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENEIANMNLGDSNALANGLSSMLMNI 60
           MHS EKV DD AN+DS  S ELE SIS NG+++EEN++AN NL +SNALANGLSSML+NI
Sbjct: 1   MHSPEKVLDDPANEDSSFSVELETSISRNGNLKEENDLANTNLENSNALANGLSSMLINI 60

Query: 61  MRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLNS 120
           +RDFDSKADDTLKSQSQLS SLDR+T+ELDQLLEDAPFPFIMQHA RISSVRKRVLSLNS
Sbjct: 61  IRDFDSKADDTLKSQSQLSSSLDRITTELDQLLEDAPFPFIMQHASRISSVRKRVLSLNS 120

Query: 121 ILRSVQRRVDNIDRAISMSNLP 142
           ILRS+QRR+DNIDRAISM N P
Sbjct: 121 ILRSIQRRLDNIDRAISMGNRP 142

[Close]

BLAST of Cp4.1LG02g02330 vs. ExPASy TrEMBL
Match: A0A6J1FEP4 (Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita moschata OX=3662 GN=LOC111443260 PE=3 SV=1)

HSP 1 Score: 210 bits (535), Expect = 1.96e-67
Identity = 115/142 (80.99%), Postives = 127/142 (89.44%), Query Frame = 0


Query: 1   MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENEIANMNLGDSNALANGLSSMLMNI 60
           MHS EKV DD AN+DS VS ELE SIS NGD++EEN++AN NL +SNALANGLSSML+NI
Sbjct: 1   MHSPEKVLDDPANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINI 60

Query: 61  MRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLNS 120
           +RDFDSKADDTLKSQSQLS SLDR+T+ELDQLLE APFPFIMQHA RISSVRKRVLSLNS
Sbjct: 61  IRDFDSKADDTLKSQSQLSSSLDRITTELDQLLEAAPFPFIMQHASRISSVRKRVLSLNS 120

Query: 121 ILRSVQRRVDNIDRAISMSNLP 142
           IL S+QRR+DNIDRAISM N P
Sbjct: 121 ILGSIQRRLDNIDRAISMGNRP 142

[Close]

BLAST of Cp4.1LG02g02330 vs. TAIR 10
Match: AT1G79070.1 (SNARE-associated protein-related )

HSP 1 Score: 117.9 bits (294), Expect = 6.9e-27
Identity = 62/94 (65.96%), Postives = 77/94 (81.91%), Query Frame = 0


Query: 44  GDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQ 103
           G   A+A GLS+ML ++++DFDSKA DTL SQ +LS SLDRL  ELDQLLE+AP PFI+Q
Sbjct: 32  GGGEAMARGLSAMLESVIKDFDSKALDTLNSQDELSGSLDRLVQELDQLLENAPLPFIVQ 91

Query: 104 HALRISSVRKRVLSLNSILRSVQRRVDNIDRAIS 138
           HA RISSV++RV SLN +L+SVQRR+DNID  +S
Sbjct: 92  HASRISSVKQRVSSLNLVLKSVQRRIDNIDHMLS 125

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g02330 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG02g02330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023523877.1	2.68e-88	100.00	uncharacterized protein LOC111787988 [Cucurbita pepo subsp. pepo] >XP_023523879....	[more]
XP_022940122.1	3.13e-87	98.59	uncharacterized protein LOC111445840 isoform X2 [Cucurbita moschata]	[more]
XP_022940121.1	3.23e-87	98.59	uncharacterized protein LOC111445840 isoform X1 [Cucurbita moschata]	[more]
XP_022981117.1	6.51e-84	95.77	uncharacterized protein LOC111480361 [Cucurbita maxima] >XP_022981118.1 uncharac...	[more]
XP_038897522.1	4.89e-68	80.00	uncharacterized protein LOC120085558 isoform X6 [Benincasa hispida]	[more]

BLAST of Cp4.1LG02g02330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FIR1	1.51e-87	98.59	Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita mosch...	[more]
A0A6J1FHK0	1.57e-87	98.59	Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita mosch...	[more]
A0A6J1J178	3.15e-84	95.77	Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita maxim...	[more]
A0A6J1IKP2	3.40e-68	80.99	Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita maxim...	[more]
A0A6J1FEP4	1.96e-67	80.99	Biogenesis of lysosome-related organelles complex 1 subunit 7 OS=Cucurbita mosch...	[more]

BLAST of Cp4.1LG02g02330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79070.1	6.9e-27	65.96	SNARE-associated protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028119	Snapin/Pallidin/Snn1	PFAM	PF14712	Snapin_Pallidin	coord: 48..132 e-value: 1.1E-19 score: 70.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
IPR017246	Snapin	PANTHER	PTHR31305	SNARE-ASSOCIATED PROTEIN SNAPIN	coord: 9..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g02330.1	Cp4.1LG02g02330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0031083	BLOC-1 complex