Cp4.1LG02g01830 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG02g01830
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description30S ribosomal protein S20
LocationCp4.1LG02: 4353027 .. 4355699 (+)
RNA-Seq ExpressionCp4.1LG02g01830
SyntenyCp4.1LG02g01830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGGGGATATACAAAACTGGAATCCAAACACCCAAAAATAACGGAAAATAAACCGATACTGCGTAGCTCTTCTTCCAGTGGATAAGCGCATACGAAAGTGTAGTAGAACCGCCATTCTTCAAACTGTGGAGCTTCGTGAATTGCCCAGCGAAAAATGGCGGCGGCTTCATTTAGTTGCTTTGCTCTTCCTTCTAAGTTCGGGAATCTTTCCCTTAATGCTTCTTCCTCCTGTTTGCCTGTTTCCTCGTCTTCTTTGGCTCTCAAATGTCTCAGTTTCTCGTCCAATATTTCAGTTTCTGCCTTCTCCGATGGTAATTTCTTTCTGTCTTCTACTTTGATTTCTTGAAGAATTGGGGTTTATTTTGGTTCATTTTCGTTTAGGGTGCCTGTCGATGAGTGGAGCTCAGAGGCCACTTCGTTACTCTGTGGTTTGCGAGGCGGCTCCTCAGAAAAAGGCTGATTCTGCTGCAAAGAGAGCCCGGCAGGCTGAGAAAAGACGCACTTATAACAAAGCTCGGAAGTCCGAAATCAGAACCAGAATGAAGAAGGTACCTAATTTTGGCTGGTTTTCAGATTTTTGTTATGGAATTCTCTCGGAATTGATGAAATCCATCGCTCGTGAAATTGAAAATGAAAATGAATCTAATGTATCTGTTGATAATGTGGAGAATAAATTTGGGTGTGTTCTGTCTGAGAATTATGCACTCCAGAATTTGTTTCATCTTTGATTGAGTATTTCTATTTGAAACAAACCAGCCCAAGTCCTAACAGCTCCCCTCCTTCTCTACAAGCTTTATTTTTGGCACTGGAATGTTGAATTTCTTGGTGATTTTCGTTCTGGCTGGCATTTGCCTAATTGTTAAGCACTTTTAAAAAACTGAACTGTATCAGAACTGAAGGGGTTAAGTACTTCTGTGTGTTCCTTGGATAGAATTGATGCTTGATGCTTGCTATTATTTTGTATGATTTTGTTTGTCAAGGTCGATCGTAGCTTGTTGGCTTGGTTGCTTTGTTGTTGAGTTGTGCTGCTTGATATGAAAATCTGATCAATTGAAGTTCTTGTTTATAAAAAATAGTTATACACGCTGCCCACCACCCAAATAAGACATGAAACGACAATGTAGGCTACTACAGGGAAGTCAAAGCAACTAAACTAATTTTCTCATGTAGAGAACTAAATAATGATCCTTGGTATATTTTGTATAGTATGAACTATCGAGCATCCATACTTGATGAAGAATTGGAAAATGACTCACAAAAATAGTTAGGCAGCTATAGATGATTGAATATTCTTGTCCAGAGGTGAATTGCTTCAGCATAGAACTTTTCGATGGGCTAGAGATGGGTTTTCTAGATGGTTTTCTTGTTGGTAAAGACCAAATTGACGTGTTTGAATGGCGTTTGGCTTGGCCAAGTTGTTCGAATATTTAGTTGCTGGTGATAATTGTTGTTGTTTCAACTTTGGATGTGAGGTCCCCCATCGGTTGGAGAGGGGAATGAAGCATTTTTTATAAAGACGTGGAAACCTTCCCCTAGCGACACGTTTTAAAAACCTTAAGAGGAAGCCCAAAAGAGAAAGTCCAAAGAGAACAGTACCTACAAACGGTGGGCGTGGGCTTGGGCTTGGGCTTGGGCTGTTACAATGGGAGAGCTGTGTAATATTACTAACATCTTTTCCCTGTGCTAGTAATAAGTGACCTTTTGTGTTACTGGAGTTCCTTCTTGAAATAATCTTAAGTTTGAGAATCTTATGCACCTAGGACGAATTTCTTTTTTTTTACTTTGGTGTCTCTTGCAAATGTTTAATTATGTTTGCAACGTTAGCCACCACGGATTGGTCCAGTGGTCGAAAGGGTTGTGTTTATAAAACTAAGGAATTAGAAAGAATTGGTTCAAGCCATGATGGCCACCTACCCGAAATGTAATATTGTTTGAGGGACCTTGGCCACAAAATATAGTAGGATGATATAGTTGTCTCGAGAGAATAGTTAAAGTGTGCGCAAGCTAGCTCAAACTCTCATGGATGTCCAAATATATATATATATGTTTGCGAAGTTCTCGTTTGTCATCCTTCCATATCAAAATATATATATATATATATGTTTGCGAAGTTCTCGTTTGTCATCCTTCCAAGAAAACGAAAGTGTTGTAGCTTAATCCTTTTCGAGTTTCATTCATTTTTCTTTTGGTAACTATTCTTTCTCTCATACAATTCCAGGCTATGGAAGCTTTAGATGATCTGAAGAAGAAACCTGAAGCACAATCAGAGGAAGTTCTTCCAATTGAGAAGCTCATAGCAGAAGCATACTCGGTGATCGACAAAGCCGTGAAAGTCGGAACATTACACCGAAACACTGCAGCACACCGAAAATCTCGGCTAGCCAGAAGAAAGAAAGCTGTAGAGATCCACCATGGCTGGTACACCCCTACCTCACCAGCAGCTGCCTGATGCTACCCTCTTGTTCTCATAGCTAATGGGGCTGAAGAAGGAGTGGGAAGATCAGATCAGATCAGATATTGACAAGTTTGTTTCATTTTCCTTCATCTGTTTCTCTTATTTGATATTTAGTTTGAATCTTGTTCTTTGTCTACTGCTGCAGTTTCACTTCTATATCATCTGTGCTCTTGGTTAATGGTTCCATAAAATTTTACTTCAACAAAAGCTTGTTTTAA

mRNA sequence

TTGGGGATATACAAAACTGGAATCCAAACACCCAAAAATAACGGAAAATAAACCGATACTGCGTAGCTCTTCTTCCAGTGGATAAGCGCATACGAAAGTGTAGTAGAACCGCCATTCTTCAAACTGTGGAGCTTCGTGAATTGCCCAGCGAAAAATGGCGGCGGCTTCATTTAGTTGCTTTGCTCTTCCTTCTAAGTTCGGGAATCTTTCCCTTAATGCTTCTTCCTCCTGTTTGCCTGTTTCCTCGTCTTCTTTGGCTCTCAAATGTCTCAGTTTCTCGTCCAATATTTCAGTTTCTGCCTTCTCCGATGGGTGCCTGTCGATGAGTGGAGCTCAGAGGCCACTTCGTTACTCTGTGGTTTGCGAGGCGGCTCCTCAGAAAAAGGCTGATTCTGCTGCAAAGAGAGCCCGGCAGGCTGAGAAAAGACGCACTTATAACAAAGCTCGGAAGTCCGAAATCAGAACCAGAATGAAGAAGGCTATGGAAGCTTTAGATGATCTGAAGAAGAAACCTGAAGCACAATCAGAGGAAGTTCTTCCAATTGAGAAGCTCATAGCAGAAGCATACTCGGTGATCGACAAAGCCGTGAAAGTCGGAACATTACACCGAAACACTGCAGCACACCGAAAATCTCGGCTAGCCAGAAGAAAGAAAGCTGTAGAGATCCACCATGGCTGGTACACCCCTACCTCACCAGCAGCTGCCTGATGCTACCCTCTTGTTCTCATAGCTAATGGGGCTGAAGAAGGAGTGGGAAGATCAGATCAGATCAGATATTGACAAGTTTGTTTCATTTTCCTTCATCTGTTTCTCTTATTTGATATTTAGTTTGAATCTTGTTCTTTGTCTACTGCTGCAGTTTCACTTCTATATCATCTGTGCTCTTGGTTAATGGTTCCATAAAATTTTACTTCAACAAAAGCTTGTTTTAA

Coding sequence (CDS)

ATGGCGGCGGCTTCATTTAGTTGCTTTGCTCTTCCTTCTAAGTTCGGGAATCTTTCCCTTAATGCTTCTTCCTCCTGTTTGCCTGTTTCCTCGTCTTCTTTGGCTCTCAAATGTCTCAGTTTCTCGTCCAATATTTCAGTTTCTGCCTTCTCCGATGGGTGCCTGTCGATGAGTGGAGCTCAGAGGCCACTTCGTTACTCTGTGGTTTGCGAGGCGGCTCCTCAGAAAAAGGCTGATTCTGCTGCAAAGAGAGCCCGGCAGGCTGAGAAAAGACGCACTTATAACAAAGCTCGGAAGTCCGAAATCAGAACCAGAATGAAGAAGGCTATGGAAGCTTTAGATGATCTGAAGAAGAAACCTGAAGCACAATCAGAGGAAGTTCTTCCAATTGAGAAGCTCATAGCAGAAGCATACTCGGTGATCGACAAAGCCGTGAAAGTCGGAACATTACACCGAAACACTGCAGCACACCGAAAATCTCGGCTAGCCAGAAGAAAGAAAGCTGTAGAGATCCACCATGGCTGGTACACCCCTACCTCACCAGCAGCTGCCTGA

Protein sequence

MAAASFSCFALPSKFGNLSLNASSSCLPVSSSSLALKCLSFSSNISVSAFSDGCLSMSGAQRPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKPEAQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPTSPAAA
Homology
[Close]
BLAST of Cp4.1LG02g01830 vs. ExPASy Swiss-Prot
Match: P82130 (30S ribosomal protein S20, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS20 PE=1 SV=2)

HSP 1 Score: 179.1 bits (453), Expect = 4.6e-44
Identity = 113/179 (63.13%), Postives = 129/179 (72.07%), Query Frame = 0 

Query: 1   MAAASFSCFALPSKFGNLSLNASSSCLPVSSSSLALKCLSFSSNISVSAFSDGCLSMSGA 60
           MA  S  C ++ SK  NLS   SS+  P SS    LK L+FS+N+S   FS GC S+   
Sbjct: 6   MACVSSQCLSISSKLHNLSF--SSTQFPNSS----LKPLTFSANLSQPLFSQGCSSLGSF 65

Query: 61  QRPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKP 120
           QR   +SVVCE A  KKADSAAKR RQAE RR  NKARKSE++TRM+K  EALD LKKK 
Sbjct: 66  QR-RGFSVVCEVATLKKADSAAKRTRQAETRRLRNKARKSEVKTRMRKVFEALDALKKKS 125

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPT 180
            A +EE++PI+ LIAEAYS IDKAV  GTLHRNTAA RKSRLAR KK VEIHHGWYTP+
Sbjct: 126 GASTEELVPIDNLIAEAYSAIDKAVVKGTLHRNTAARRKSRLARNKKVVEIHHGWYTPS 177

[Close]
BLAST of Cp4.1LG02g01830 vs. ExPASy Swiss-Prot
Match: Q9ASV6 (30S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS20 PE=2 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 3.9e-43
Identity = 114/187 (60.96%), Postives = 133/187 (71.12%), Query Frame = 0 

Query: 7   SCFALPSKFGNLSLNASSSCLPVSS-------SSLALKCLSFSSNIS-VSAFSDGCLSMS 66
           SC  L S+F  LSL   S   P SS       S+     LSFS ++S   AFS G L   
Sbjct: 10  SCATLESQFKVLSLKGISCSSPSSSFSNRRGASATLSSSLSFSQSVSQCVAFSTGNL--- 69

Query: 67  GAQRPLRYSVVCE-AAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLK 126
             Q+P+R  +VCE AAP KKADSAAKRARQAEKRR YNK++KSE RTRMKK +EAL+ LK
Sbjct: 70  WVQKPMRQLIVCEAAAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLK 129

Query: 127 KKPEAQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYT 185
           KK +AQ++E++ +EKLI EAYS IDKAVKV  LH+NT A RKSRLARRKKAVEIHHGWY 
Sbjct: 130 KKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHHGWYV 189

[Close]
BLAST of Cp4.1LG02g01830 vs. ExPASy Swiss-Prot
Match: B0C2C8 (30S ribosomal protein S20 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rpsT PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.0e-08
Identity = 42/89 (47.19%), Postives = 54/89 (60.67%), Query Frame = 0 

Query: 80  SAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKPEAQSEEVLPIEKLIAEAYS 139
           SA KR   AE+ R  NKA KS I+T  K+   A+DD K  P    +++  I+  ++  YS
Sbjct: 6   SAKKRILIAERNRLQNKAYKSAIKTFTKRFQAAVDDYKSNP--SDDQLAAIQNEMSVTYS 65

Query: 140 VIDKAVKVGTLHRNTAAHRKSRLARRKKA 169
            IDKAVKVG  HRNT A +K+ LAR  KA
Sbjct: 66  KIDKAVKVGVFHRNTGARKKAGLARILKA 92

[Close]
BLAST of Cp4.1LG02g01830 vs. ExPASy Swiss-Prot
Match: B1WZT9 (30S ribosomal protein S20 OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) OX=43989 GN=rpsT PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.3e-08
Identity = 38/90 (42.22%), Postives = 59/90 (65.56%), Query Frame = 0 

Query: 80  SAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKPEAQSEEVLPIEKLIAEAYS 139
           SA KR R +E+ R  NK+ KS +RT MKK ++A+++    P  +++ V  +++ ++ AYS
Sbjct: 6   SALKRIRTSERNRLRNKSYKSAVRTLMKKYLQAVEEYAASPTPENKAV--VDQRMSAAYS 65

Query: 140 VIDKAVKVGTLHRNTAAHRKSRLARRKKAV 170
            IDKAVK   LHRN  A +K+RLA+  + V
Sbjct: 66  KIDKAVKRSVLHRNNGARKKARLAKALQQV 93

[Close]
BLAST of Cp4.1LG02g01830 vs. ExPASy Swiss-Prot
Match: B7JWV1 (30S ribosomal protein S20 OS=Rippkaea orientalis (strain PCC 8801) OX=41431 GN=rpsT PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.9e-08
Identity = 42/90 (46.67%), Postives = 54/90 (60.00%), Query Frame = 0 

Query: 80  SAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKPEAQSEEVLPIEKLIAEAYS 139
           SA KR   AE+ R +NKA KS +RT MKK  EA+      P   +  V  +E+ ++ AYS
Sbjct: 6   SALKRIAVAERNRLHNKAYKSAVRTLMKKYFEAVQAYGNNPTPDNLSV--VEQCMSAAYS 65

Query: 140 VIDKAVKVGTLHRNTAAHRKSRLARRKKAV 170
            IDKAVK   LHRN  A +K+RLA+  K V
Sbjct: 66  KIDKAVKRHVLHRNNGARKKARLAKALKQV 93

[Close]
BLAST of Cp4.1LG02g01830 vs. NCBI nr
Match: XP_023525527.1 (30S ribosomal protein S20, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 334 bits (856), Expect = 6.42e-115
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0 

Query: 1   MAAASFSCFALPSKFGNLSLNASSSCLPVSSSSLALKCLSFSSNISVSAFSDGCLSMSGA 60
           MAAASFSCFALPSKFGNLSLNASSSCLPVSSSSLALKCLSFSSNISVSAFSDGCLSMSGA
Sbjct: 1   MAAASFSCFALPSKFGNLSLNASSSCLPVSSSSLALKCLSFSSNISVSAFSDGCLSMSGA 60

Query: 61  QRPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKP 120
           QRPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKP
Sbjct: 61  QRPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKP 120

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPTS 180
           EAQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPTS
Sbjct: 121 EAQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPTS 180

Query: 181 PAAA 184
           PAAA
Sbjct: 181 PAAA 184

[Close]
BLAST of Cp4.1LG02g01830 vs. NCBI nr
Match: KAG6607892.1 (30S ribosomal protein S20, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037419.1 30S ribosomal protein S20, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 326 bits (836), Expect = 7.18e-112
Identity = 181/184 (98.37%), Postives = 182/184 (98.91%), Query Frame = 0 

Query: 1   MAAASFSCFALPSKFGNLSLNASSSCLPVSSSSLALKCLSFSSNISVSAFSDGCLSMSGA 60
           MAAASFSCFALPSKFGNLSLNASSSCLPVSSSSLALK LSFSSNISVSAFS+GCLSMSGA
Sbjct: 1   MAAASFSCFALPSKFGNLSLNASSSCLPVSSSSLALKSLSFSSNISVSAFSNGCLSMSGA 60

Query: 61  QRPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKP 120
           QRPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKP
Sbjct: 61  QRPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKP 120

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPTS 180
           EAQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTP S
Sbjct: 121 EAQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPAS 180

Query: 181 PAAA 184
           PAAA
Sbjct: 181 PAAA 184

[Close]
BLAST of Cp4.1LG02g01830 vs. NCBI nr
Match: XP_022981947.1 (30S ribosomal protein S20, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 326 bits (836), Expect = 7.18e-112
Identity = 179/184 (97.28%), Postives = 182/184 (98.91%), Query Frame = 0 

Query: 1   MAAASFSCFALPSKFGNLSLNASSSCLPVSSSSLALKCLSFSSNISVSAFSDGCLSMSGA 60
           MAAASFSCFALPSKFGNLSLNASSSCLPVSSSSLAL+ LSFSSN+SVSAFSDGCLSMSGA
Sbjct: 1   MAAASFSCFALPSKFGNLSLNASSSCLPVSSSSLALRSLSFSSNVSVSAFSDGCLSMSGA 60

Query: 61  QRPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKP 120
           QRPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKP
Sbjct: 61  QRPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKP 120

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPTS 180
           EAQSEEVLP+EKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTP S
Sbjct: 121 EAQSEEVLPVEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPAS 180

Query: 181 PAAA 184
           PAAA
Sbjct: 181 PAAA 184

[Close]
BLAST of Cp4.1LG02g01830 vs. NCBI nr
Match: XP_022941386.1 (30S ribosomal protein S20, chloroplastic [Cucurbita moschata])

HSP 1 Score: 324 bits (831), Expect = 4.15e-111
Identity = 180/184 (97.83%), Postives = 181/184 (98.37%), Query Frame = 0 

Query: 1   MAAASFSCFALPSKFGNLSLNASSSCLPVSSSSLALKCLSFSSNISVSAFSDGCLSMSGA 60
           MAAASFSCFALPSKFGNLSLNAS SCLPVSSSSLALK LSFSSNISVSAFS+GCLSMSGA
Sbjct: 1   MAAASFSCFALPSKFGNLSLNASPSCLPVSSSSLALKSLSFSSNISVSAFSNGCLSMSGA 60

Query: 61  QRPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKP 120
           QRPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKP
Sbjct: 61  QRPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKP 120

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPTS 180
           EAQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTP S
Sbjct: 121 EAQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPAS 180

Query: 181 PAAA 184
           PAAA
Sbjct: 181 PAAA 184

[Close]
BLAST of Cp4.1LG02g01830 vs. NCBI nr
Match: XP_038899721.1 (30S ribosomal protein S20, chloroplastic [Benincasa hispida])

HSP 1 Score: 281 bits (719), Expect = 4.84e-94
Identity = 156/184 (84.78%), Postives = 167/184 (90.76%), Query Frame = 0 

Query: 1   MAAASFSCFALPSKFGNLSLNASSSCLPVSSSSLALKCLSFSSNISVSAFSDGCLSMSGA 60
           MAA + SCF+LPSKF NLSLNASSSC+P S SSL L+ LSFSSN SVSAFS+GCL+MS A
Sbjct: 1   MAATAVSCFSLPSKFRNLSLNASSSCIPASPSSLTLRSLSFSSNTSVSAFSNGCLTMSKA 60

Query: 61  QRPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKP 120
           QRP RYSVVCEAAP+ KADSAAKR RQAEKRR YNKARKSEI+TR+KK +EALD LKKKP
Sbjct: 61  QRPSRYSVVCEAAPKNKADSAAKRTRQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 120

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPTS 180
           EAQSEEVLPIEKLIAEAYSVIDKAV+VGTLHRNTAA RKSRLARRKKAVEIHHGWYTP S
Sbjct: 121 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAAA 184
           PAAA
Sbjct: 181 PAAA 184

[Close]
BLAST of Cp4.1LG02g01830 vs. ExPASy TrEMBL
Match: A0A6J1IVC5 (30S ribosomal protein S20, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111480940 PE=3 SV=1)

HSP 1 Score: 326 bits (836), Expect = 3.48e-112
Identity = 179/184 (97.28%), Postives = 182/184 (98.91%), Query Frame = 0 

Query: 1   MAAASFSCFALPSKFGNLSLNASSSCLPVSSSSLALKCLSFSSNISVSAFSDGCLSMSGA 60
           MAAASFSCFALPSKFGNLSLNASSSCLPVSSSSLAL+ LSFSSN+SVSAFSDGCLSMSGA
Sbjct: 1   MAAASFSCFALPSKFGNLSLNASSSCLPVSSSSLALRSLSFSSNVSVSAFSDGCLSMSGA 60

Query: 61  QRPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKP 120
           QRPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKP
Sbjct: 61  QRPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKP 120

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPTS 180
           EAQSEEVLP+EKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTP S
Sbjct: 121 EAQSEEVLPVEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPAS 180

Query: 181 PAAA 184
           PAAA
Sbjct: 181 PAAA 184

[Close]
BLAST of Cp4.1LG02g01830 vs. ExPASy TrEMBL
Match: A0A6J1FKZ1 (30S ribosomal protein S20, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111446691 PE=3 SV=1)

HSP 1 Score: 324 bits (831), Expect = 2.01e-111
Identity = 180/184 (97.83%), Postives = 181/184 (98.37%), Query Frame = 0 

Query: 1   MAAASFSCFALPSKFGNLSLNASSSCLPVSSSSLALKCLSFSSNISVSAFSDGCLSMSGA 60
           MAAASFSCFALPSKFGNLSLNAS SCLPVSSSSLALK LSFSSNISVSAFS+GCLSMSGA
Sbjct: 1   MAAASFSCFALPSKFGNLSLNASPSCLPVSSSSLALKSLSFSSNISVSAFSNGCLSMSGA 60

Query: 61  QRPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKP 120
           QRPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKP
Sbjct: 61  QRPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKP 120

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPTS 180
           EAQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTP S
Sbjct: 121 EAQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPAS 180

Query: 181 PAAA 184
           PAAA
Sbjct: 181 PAAA 184

[Close]
BLAST of Cp4.1LG02g01830 vs. ExPASy TrEMBL
Match: A0A6J1IG57 (30S ribosomal protein S20, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111476939 PE=3 SV=1)

HSP 1 Score: 280 bits (717), Expect = 4.72e-94
Identity = 159/183 (86.89%), Postives = 167/183 (91.26%), Query Frame = 0 

Query: 2   AAASFSCFALPSKFGNLSLNASSSCLPVSSSSLALKCLSFSSNISVSAFSDGCLSMSGAQ 61
           A A  SCFALPSKF NLSLNASSS +P+S SS  L+ LSFSSN+SVSAFS+GCLS+S AQ
Sbjct: 3   ATAIISCFALPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISKAQ 62

Query: 62  RPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKPE 121
           RP RYSVVCEAAP KKADSAAKRARQAEKRR YNKARKSEI+TRMKK MEALDDLKKKPE
Sbjct: 63  RPFRYSVVCEAAP-KKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKPE 122

Query: 122 AQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPTSP 181
           AQSEEVLPIEKLIAEA+SVIDKAVKVGTLHRNTAA RKSRLARRKKAVEIHHGWYTP SP
Sbjct: 123 AQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPASP 182

Query: 182 AAA 184
           AAA
Sbjct: 183 AAA 184

[Close]
BLAST of Cp4.1LG02g01830 vs. ExPASy TrEMBL
Match: A0A6J1CG14 (30S ribosomal protein S20, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111010468 PE=3 SV=1)

HSP 1 Score: 276 bits (707), Expect = 1.57e-92
Identity = 155/184 (84.24%), Postives = 165/184 (89.67%), Query Frame = 0 

Query: 1   MAAASFSCFALPSKFGNLSLNASSSCLPVSSSSLALKCLSFSSNISVSAFSDGCLSMSGA 60
           MAAA+ +CF++ SKF NLSLNASSS  P SSSS  LK L+FSSN+S  AFS+GCLSMS A
Sbjct: 1   MAAAAITCFSISSKFRNLSLNASSSSFPASSSSSTLKSLTFSSNLSFCAFSNGCLSMSEA 60

Query: 61  QRPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKP 120
           QRPLRYSVVCEAAP+KK DSAAKRARQAEKRR YNKARKSEI+TRMKK +EALDDLKKKP
Sbjct: 61  QRPLRYSVVCEAAPKKKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDDLKKKP 120

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPTS 180
           EAQSEEVL IEKLIAEAYSVIDKAVKVGTLHRNTAA RKSRLARRKKAVEIHHGWY P S
Sbjct: 121 EAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPAS 180

Query: 181 PAAA 184
           PAAA
Sbjct: 181 PAAA 184

[Close]
BLAST of Cp4.1LG02g01830 vs. ExPASy TrEMBL
Match: A0A6J1F6F1 (30S ribosomal protein S20, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442556 PE=3 SV=1)

HSP 1 Score: 276 bits (707), Expect = 1.57e-92
Identity = 158/183 (86.34%), Postives = 166/183 (90.71%), Query Frame = 0 

Query: 2   AAASFSCFALPSKFGNLSLNASSSCLPVSSSSLALKCLSFSSNISVSAFSDGCLSMSGAQ 61
           A A  SCFALPSKF NLSLNASSS + +S SS  L+ LSFSSN+SVSAFS+GCLS+S AQ
Sbjct: 3   ATAIISCFALPSKFRNLSLNASSSSMLLSPSSSTLRSLSFSSNVSVSAFSNGCLSISKAQ 62

Query: 62  RPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKPE 121
           RP RYSVVCEAAP KKADSAAKRARQAEKRR YNKARKSEI+TRMKK MEALDDLKKKPE
Sbjct: 63  RPFRYSVVCEAAP-KKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKPE 122

Query: 122 AQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPTSP 181
           AQSEEVLPIEKLIAEA+SVIDKAVKVGTLHRNTAA RKSRLARRKKAVEIHHGWYTP SP
Sbjct: 123 AQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPASP 182

Query: 182 AAA 184
           AAA
Sbjct: 183 AAA 184

[Close]
BLAST of Cp4.1LG02g01830 vs. TAIR 10
Match: AT3G15190.1 (chloroplast 30S ribosomal protein S20, putative )

HSP 1 Score: 176.0 bits (445), Expect = 2.7e-44
Identity = 114/187 (60.96%), Postives = 133/187 (71.12%), Query Frame = 0 

Query: 7   SCFALPSKFGNLSLNASSSCLPVSS-------SSLALKCLSFSSNIS-VSAFSDGCLSMS 66
           SC  L S+F  LSL   S   P SS       S+     LSFS ++S   AFS G L   
Sbjct: 10  SCATLESQFKVLSLKGISCSSPSSSFSNRRGASATLSSSLSFSQSVSQCVAFSTGNL--- 69

Query: 67  GAQRPLRYSVVCE-AAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLK 126
             Q+P+R  +VCE AAP KKADSAAKRARQAEKRR YNK++KSE RTRMKK +EAL+ LK
Sbjct: 70  WVQKPMRQLIVCEAAAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLK 129

Query: 127 KKPEAQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYT 185
           KK +AQ++E++ +EKLI EAYS IDKAVKV  LH+NT A RKSRLARRKKAVEIHHGWY 
Sbjct: 130 KKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHHGWYV 189

The following BLAST results are available for this feature:
BLAST of Cp4.1LG02g01830 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P821304.6e-4463.1330S ribosomal protein S20, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS20 P... [more]
Q9ASV63.9e-4360.9630S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS2... [more]
B0C2C84.0e-0847.1930S ribosomal protein S20 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 ... [more]
B1WZT95.3e-0842.2230S ribosomal protein S20 OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) ... [more]
B7JWV16.9e-0846.6730S ribosomal protein S20 OS=Rippkaea orientalis (strain PCC 8801) OX=41431 GN=r... [more]
BLAST of Cp4.1LG02g01830 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023525527.16.42e-115100.0030S ribosomal protein S20, chloroplastic [Cucurbita pepo subsp. pepo][more]
KAG6607892.17.18e-11298.3730S ribosomal protein S20, chloroplastic, partial [Cucurbita argyrosperma subsp.... [more]
XP_022981947.17.18e-11297.2830S ribosomal protein S20, chloroplastic-like [Cucurbita maxima][more]
XP_022941386.14.15e-11197.8330S ribosomal protein S20, chloroplastic [Cucurbita moschata][more]
XP_038899721.14.84e-9484.7830S ribosomal protein S20, chloroplastic [Benincasa hispida][more]
BLAST of Cp4.1LG02g01830 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IVC53.48e-11297.2830S ribosomal protein S20, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1FKZ12.01e-11197.8330S ribosomal protein S20, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1IG574.72e-9486.8930S ribosomal protein S20, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1CG141.57e-9284.2430S ribosomal protein S20, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A6J1F6F11.57e-9286.3430S ribosomal protein S20, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
BLAST of Cp4.1LG02g01830 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G15190.12.7e-4460.96chloroplast 30S ribosomal protein S20, putative [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 99..119
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..100
NoneNo IPR availablePANTHERPTHR33398:SF530S RIBOSOMAL PROTEIN S20, CHLOROPLASTICcoord: 1..183
IPR002583Ribosomal protein S20PFAMPF01649Ribosomal_S20pcoord: 79..165
e-value: 3.4E-21
score: 75.6
IPR002583Ribosomal protein S20TIGRFAMTIGR00029TIGR00029coord: 78..164
e-value: 6.3E-16
score: 56.7
IPR002583Ribosomal protein S20PANTHERPTHR3339830S RIBOSOMAL PROTEIN S20coord: 1..183
IPR002583Ribosomal protein S20HAMAPMF_00500Ribosomal_S20coord: 57..168
score: 15.333127
IPR036510Ribosomal protein S20 superfamilyGENE3D1.20.58.110Ribosomal protein S20coord: 78..184
e-value: 2.9E-37
score: 129.1
IPR036510Ribosomal protein S20 superfamilySUPERFAMILY46992Ribosomal protein S20coord: 79..181

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g01830.1Cp4.1LG02g01830.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0070181 small ribosomal subunit rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding