Cp4.1LG01g26110 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g26110
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	UPF0400 protein C337.03-like
Location	Cp4.1LG01: 21074192 .. 21085326 (-)
RNA-Seq Expression	Cp4.1LG01g26110
Synteny	Cp4.1LG01g26110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATGCTTTCAAGTGCCAACGACGATGGACTACGAACACGCGGACTACCTGGTCCAACCCACTCATCAACATACTTCTCTGAAAGTGGCATCCATTTCGTCAATAAAGATTTATCCTCTTGTTCAACAGCCCAGACTGTTATTAAAACTAGGCCACCTTTCTTGACAACACGGATTAATTCTTCGATTGCTTTCCTCCTCCTGTTTTCAGTACTTAGATGATGTAATACAGCTATAGAGATCGCTGCATCGCCAAAACCAGTTCTGTAAGGAAGATTTACTGCATCAGCCACCAAAACTTCATGCCCCCTCTCATCACAAATTTTGATAAGTTGGGCACTAATATCACATCCAATGAAAAAGCAGTTGGGATTAAAACCCAAGTACTTTCCATTACCACAGCCAGCATCCAGGACGAGGGACCCTAGAGGTAACGATGATAAAAAGGATGCAACTTTTGGCCACTTTGCAAATCGAGTTGAACTAAAATGGGGAGCAATGGCATCATAAACACGATGCACATATTTCTTTTCAATTTCAGGTGTGCACTGCACATTTGATGATGAACAGCTCTGGTTTGCAGAAGTCAATTGCTGTGCATGTGTTTCATCATTCAACAGATCAGGATCTGCATTAGAACCACTTCTGACTTTAATCTCTTTCATACCACTGGAAAGTCTAGAATGATGCCCACTACCACTTACAACAGAGGATAAACCAAAGATTTTACTATTGTGACAGAAACGTTTGCTCACTCCTGTAGCACAGCCAAAAGCTCGAGCCAAGAAAATCAATTAGGCATACCCTGCAAGAAACCATGGCTCTCTAAGGACTAAATTTCTTGCAGTTCTTTCACTGTATAGAAGTCTATTATACAAAAACATGTACACAAAGACATATAAGAAACATGTACAAAGTGATATGCAGTTTGCAGGGCTGATAACAAGAGGATAGACTTTTCATTCATTCATTCATTCATTCACTGCTAGAACACAGCAAAGATTCGAGCTCGTCTCAGTTCCTTAACAATTTCCCCAAACAGTTCCCTCTAAAATCAAAGGTCTATTTCTTCTTCCTTCGTAGTTTAGCCTTGTCCAGAAGGAAAGCCAATCTCATTTAGACAGGACTAGTCAACTACTACTTGTGGAAAATACTCACAAAGACAAATAGAAAACATCGGAGGATTGGGAAAAGGACAGCGCAATAATGGAGAGAGTTAACATTAATGTCGCTACTTGGCCGTATTATCATAGCAAATATCATTGTATTCATAATTGAATCTCCACAGATTTCCACGGGAGCGAAAAAATGAGAAACAAATCCATTATCCAAGAACAAGGTAACAACCAAACACATCCAAGCGATTGAAATACAAGAAAGTAACACAGAAGCAACAGCAACAACTAGAGAAAACATCGTGCAAAAAACAAAATAGAAATCTTGATTTAAATAGATCCAGGAAAAGATGGAGAAACTCACGAAACTCATGTACGGCGTGTGTGCATGATTGTGGCGAAAGATTGGAGAAAAAACAGTGGAATCTAGTTCATGATTGGAAGAAAGAAAGAAAAAGAGAGGAAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCATATGTATATGTGTTTTATTTAGACCCATTTTAATATTACTCATAGATTGGCATTTGGGAGGAGAGAAAAGTTTTTGGATCTCGAGGGCAGAGTCTTAAGGAAGAGATAATGGGAAAGCATACGGAAACTGGTAACCGAAATGGGAAGCAAGTTAGCGCTAAACTGGTAAAATATTGCTCTTCCGTCATGAATACCGAGTTATGTTCATAAATAGTCTGGCCAAGTGCTCTTTCAGTCACCTATTTCATTATTCTTTTCAACAGAAACAATCAGCCAGCGAGTCATTGGATAAAATAGTTTCTGGTTACCAAGTTGTTTTTGGAAGTGAGGTAGATGAAGATGTAGTACTAAGCAGATGCAGCAATTCTATTAGCTATCTTGAGAAACTGGACAAACAAATTGGCGCTGATGTCAATTCAGGTACTTTAGCTTGTACATTGTTGATTATTTTAGCTTATTCGTTCTTAATTATTTTTACTGCATATTCTGTATTGTATGATTTCTCTCCTGTTATTCGTTCTGAAGTTCAGGAACTAATTAACCTTCGGTGTAATGTTTTCATTTTTTCCCCTCCGCCTCCACCTGACATCCGACCACCTCAGACTCAGATCGCCAAAAAGGAAAAAAGGTTTCTGGAAGAGAGAAAAAAAAAAAAATGTTTTTGAAGAACTAAGCACGCGAATAATTGGAAAAAGGTTTTGGTGCCTTCTTATCACAGGGGCCTACAAATTGTTGAACATTCTTTTCTCTTATGTGGTTTTACTCCTTAGTTATGATGCAAATTTCGTGTGCTGTGTATTCCCAAGAGATCCTTGTTCTCAATTATGTTGAGACGTTTTCGGAGGAGCTTTATAGTTTTTTTTAACTACACAGGGCAATACCATGGAACTTCAATTGCAGAGGATCTGCGGGGACATCATACCATTTTGAGGGACTGCATTGAACAACTAAGAGCAGTTGAAACATCAAGGGCGAGTCTCGTGTCTCATCTGAGAGAGGCTCTTCAAGAACAGGTATTTTGACATCTTGTTGGAGAAAAATCAAGGTCACAATTATTCGAAGTAAACCTTAAAACTCTATCTTTAAATATAAATTTCTTATATTCAGGAATTCAAATTGGAGCGAGTCAGAAATCAACTTCAGGTTTGCATTTCTGTTTCACAACTCCTTGGAGTATGGACTCGCTGATTCTTTTTTGTTTTGATGATTAATTGGTTTAGATTAACCCTATACGAAAACTCCGTTGTTTTGTGTGGTTGGTTCAATTTTTACATGAAACTAACTGTTCTTGTCGCCAGTTGAAACTCATCCCCAGTCATTCGTTTCCGTTTTAAAATTCACAAACCAAACCTTGATAATGCTAGGGAATGTGATCCCATGGCATGGGCTTTTCATATTTGTGTCGGACGAACCATATTCAATATGAGCGAGTTGATATAAATTATGTAGGGATTCCTTGTATCTACCTTCCCAAGATTGCATGAATTTATTTATGAAGCCTCTATTTTACTGCATTAGAGTTGATGAAGATCATGCTAATTAATTCATTCCCTGTGTTAATGGATTGGAGAGCAACTGTATAAGTGTTACAAAGAGCCTTATGCTTAGCTTAAAGAAGAAGAAAAATAAAAAGGAGAAGTTAGTTTCTCATAGGATGATAATGAGTCAAGAAATCTGTTAATATATTTATTTTAAAAAGAATTGAATTAGTTACCAAACAACTCTGTTTTTCAAAAACTAAGAAACCAAAGCTGAACGATTTATAATTCTGGTTTTTTGTTTTTAGCTTAAATAGTCGAGCTAACCCATGACGTGTCATTGGCTTAATGTATATTAATTGTTGGAAAATTTATATACATTAAGCCAATGAGAGCAACTTTCAGAAGTATTCGGACAACACAATTATTTTTTGCGTTAATGAGAACAAAATGTTGGGAAAGCTTTCTTGATCTTTCTTTAAAACCTTTTGGACTCGCTGTATGTCCGTCTAAATTATCTCTCGTTGTCCTAAACATGGACCAAGAGGATGTCTCGGCCGAGGCATACTCTTTGAGATGAAAGGGTGAGGTTGCAACAAATTAGAAATATTGCAAAGTTGAACCATATTCCTTCCCTCCAAATCAACTTTCTCCATTAGTTTCTCAGTGTTTGTCCAAAGCTATGTTGGTGCCTTTAGTTGAACATATCTGGGAAGGAAAATTGGAAAGAAGGTAACTTTATTTGGTTGGTAGGTTTCACATAGAAGCCCTGACATTCATGGAAAAGCTCAAAAGTTCGAAATGCTTAGTGTATGTGGCGTAAAAAAGAGAAAAGTGTTCGACCTTTGGTTCCTGCATTGTAATATTTCTGTTAGAGTTTGGTCCTTTCTGCTGGAAACTTTTAATATTGGATGGAAAGAAATCATGGGTTTTCCAAGATAAAGTTAAACCCATTGAATCCTTTTGTGAATTAGCACTGTATAGTGCCTTCACTTAGGGTGCGCTCCACAGTAAGTGTTTTGTAATCACGATTTCCTTCTTTAAAAAATGGATTGGAGTTCCTTTTTTAATAGTCTTTTCCCAGCAACTGGATCTTGTGATATTTGTGTTTCTGAGGAGGAAAATTCATTGACATATTGAGGATATAACCATGTCTAGATGGAATAGTTGTTTCTATGGATTGAACCAGTTTGCAGCTCTCGTGAGTTTGAGGAATATAATGAAGATGTACCCTAAAAAGCCCCTGAGTTTCGNTATACCCTAAAAAGCCTCTGAGTTTCGTTTCTGAACATGTTAGTTGAGTAGTTAAGAAGNTGTACCCTAAAAAGCCCCTGAGTTTCGTTTCTGAACATGTTAGTTGAGTAGTTAAGAAGTCAGGCAAGCATGGGTTGGTTTTGGGTACCATAGCCCAAGTACCCTCGGTAACAGCCATAGCCTACCGCTAGTAGATATTGTCTTCTTTGGGCTTTCCCTTTCGAGCTTCTCCTTAAGGTTTTTAAAACGTGTTTGCTAGGGAGAGGTTTCTACACCCTTATAAAGAATGCTTCATTCTCTCCTCCAACCAATGAGATCTACTTTTGAAAATAGTCTAGTAAACAATTTCTTCTGTAGATGCCAACGTTCTTGATGACTTACCTTTCCCCCCCTCCGATCATCCTACAGTACAGCTGCCAAATTGATGCAGTTGAATCAGAGTTTTCGAACCGAAATAAAACATCCAATGCATCAAGGTTCAAAGTAGTTATTGTTATTATTTTTGGGTGGGGCGAGAAAAACTGAGTTTAAGTGAAGTAATGAAATGTACTCAAAAGGGAGAGGAAGCCTTCCAAATGCCATGGGAATTAGACAAAGCTCCACTGAATATCCTTTTTAGCTTGACTTTCTAGTTGGTAGGTCAACATCTCTGTTGCCAGCTGAAACCTAAGAATTAGTAGCATTGCCAGACATGTTTCAAGTCATCTCTTCTTACTTGTATGTATTTTGACAGGCTTCCCAGTCCCGGTCGGAACAAACTCAGAATCTCTGCCCTCAATTTCTAAATGGTGAAAATGTGCAACCTATGACTGAGGGGGCCTCAAAAGATGCTCAGTCCTCAATCGCACCACACGGCCTTGTACCGAGGGAGATAGAACAATCAGCGCCAGTAATGTATGCAGCCTCATTACCTTTTCCTGCAAAACCTGCACCTATTGAGGAAGATCCCCGCAAGTCTGCTGCTGCTGCCGTGGCAGCAAAGCTAACTGCATCGACATCCTCGGTTCAGATGCTCTCTTACGTCCTATCTTCCCTGGCATCGGAGGGTGTAATTGGAAATCCAAATAAAGAGTTATCTTGTGACTATCCATCTGAGAAGAGGACCAAACTTGAAAATGACCAGTCACCCTACGTATTGCCTCCGAGTCCACAGCAGCCACCCGTCTCTTCCTTCCCAAACCCGGAGTCTCTCCAACGTAATGCCTCATCGACCAGTCAACAATACACTCCTCCTCCCCCATCATCATCTCCCCCGCCGATCCCTCCATTACCTCCTGTAGTGCAGTTCACACAGAATGTTGGGTCAGTAAGTAGCATGCCTTTCAGTTACAGTATGACACAATCATTGCCACCACTGGCGAAACCTGGCTATCCGAATGTAGGTGCCCCAGTGACTGGGATGTCTCCTTTTACAATACCAACAAATTCTTACCAGAGTTTTCAGGCTTCAGATGCCAATTTCTATAATCAGTCCTCATCAATGCCGATGACACCAGTTTCTAGGCCATAGAGCTGTGTAATACTAGTCTTACTTCACCTATTTGTGCTAACAAATCTTTAAGGAAGTGATGCTTCCCATTAAGGCCTATGAGGAAATCTTGCATCCTCGTGTGCTCCTTAAGTTCTGACGACATAACTAAANAAGAAGAAGAAAAATAAAAAGGAGAAGTTAGTTTCTCATAGGATGATAATGAGTCAAGAAATCTGTTAATATATTTATTTTAAAAAGAATTGAATTAGTTACCAAACAACTCTGTTTTTCAAAAACTAAGAAACCAAAGCTGAACGATTTATAATTCTGGTTTTTTGTTTTTAGCTTAAATAGTCGAGCTAACCCATGACGTGTCATTGGCTTAATGTATATTAATTGTTGGAAAATTTATATACATTAAGCCAATGAGAGCAACTTTCAGAAGTATTCGGACAACACAATTATTTTTTGCGTTAATGAGAACAAAATGTTGGGAAAGCTTTCTTGATCTTTCTTTAAAACCTTTTGGACTCGCTGTATGTCCGTCTAAATTATCTCTCGTTGTCCTAAACATGGACCAAGAGGATGTCTCGGCCGAGGCATACTCTTTGAGATGAAAGGGTGAGGTTGCAACAAATTAGAAATATTGCAAAGTTGAACCATATTCCTTCCCTCCAAATCAACTTTCTCCATTAGTTTCTCAGTGTTTGTCCAAAGCTATGTTGGTGCCTTTAGTTGAACATATCTGGGAAGGAAAATTGGAAAGAAGGTAACTTTATTTGGTTGGTAGGTTTCACATAGAAGCCCTGACATTCATGGAAAAGCTCAAAAGTTCGAAATGCTTAGTGTATGTGGCGTAAAAAAGAGAAAAGTGTTCGACCTTTGGTTCCTGCATTGTAATATTTCTGTTAGAGTTTGGTCCTTTCTGCTGGAAACTTTTAATATTGGATGGAAAGAAATCATGGGTTTTCCAAGATAAAGTTAAACCCATTGAATCCTTTTGTGAATTAGCACTGTATAGTGCCTTCACTTAGGGTGCGCTCCACAGTAAGTGTTTTGTAATCACGATTTCCTTCTTTAAAAAATGGATTGGAGTTCCTTTTTTAATAGTCTTTTCCCAGCAACTGGATCTTGTGATATTTGTGTTTCTGAGGAGGAAAATTCATTGACATATTGAGGATATAACCATGTCTAGATGGAATAGTTGTTTCTATGGATTGAACCAGTTTGCAGCTCTCGTGAGTTTGAGGAATATAATGAAGATGTACCCTAAAAAGCCCCTGAGTTTCGTTTCTGAACATGTTAGTTGAGTAGTTAAGAAGTCAGGCAAGCATGGGTTGGTTTTGGGTACCATAGCCCAAGTACCCTCGGTAACAGCCATAGCCTACCGCTAGTAGATATTGTCTTCTTTGGGCTTTCCCTTTCGAGCTTCTCCTTAAGGTTTTTAAAACGTGTTTGCTAGGGAGAGGTTTCTACACCCTTATAAAGAATGCTTCATTCTCTCCTCCAACCAATGAGATCTACTTTTGAAAATAGTCTAGTAAACAATTTCTTCTGTAGATGCCAACGTTCTTGATGACTTACCTTTCCCCCCCTCCGATCATCCTACAGTACAGCTGCCAAATTGATGCAGTTGAATCAGAGTTTTCGAACCGAAATAAAACATCCAATGCATCAAGGTTCAAAGTAGTTATTGTTATTATTTTTGGGTGGGGCGAGAAAAACTGAGTTTAAGTGAAGTAATGAAATGTACTCAAAAGGGAGAGGAAGCCTTCCAAATGCCATGGGAATTAGACAAAGCTCCACTGAATATCCTTTTTAGCTTGACTTTCTAGTTGGTAGGTCAACATCTCTGTTGCCAGCTGAAACCTAAGAATTAGTAGCATTGCCAGACATGTTTCAAGTCATCTCTTCTTACTTGTATGTATTTTGACAGGCTTCCCAGTCCCGGTCGGAACAAACTCAGAATCTCTGCCCTCAATTTCTAAATGGTGAAAATGTGCAACCTATGACTGAGGGGGCCTCAAAAGATGCTCAGTCCTCAATCGCACCACACGGCCTTGTACCGAGGGAGATAGAACAATCAGCGCCAGTAATGTATGCAGCCTCATTACCTTTTCCTGCAAAACCTGCACCTATTGAGGAAGATCCCCGCAAGTCTGCTGCTGCTGCCGTGGCAGCAAAGCTAACTGCATCGACATCCTCGGTTCAGATGCTCTCTTACGTCCTATCTTCCCTGGCATCGGAGGGTGTAATTGGAAATCCAAATAAAGAGTTATCTTGTGACTATCCATCTGAGAAGAGGACCAAACTTGAAAATGACCAGTCACCCTACGTATTGCCTCCGAGTCCACAGCAGCCACCCGTCTCTTCCTTCCCAAACCCGGAGTCTCTCCAACGTAATGCCTCATCGACCAGTCAACAATACACTCCTCCTCCCCCATCATCATCTCCCCCGCCGATCCCTCCATTACCTCCTGTAGTGCAGTTCACACAGAATGTTGGGTCAGTAAGTAGCATGCCTTTCAGTTACAGTATGACACAATCATTGCCACCACTGGCGAAACCTGGCTATCCGAATGTAGGTGCCCCAGTGACTGGGATGTCTCCTTTTACAATACCAACAAATTCTTACCAGAGTTTTCAGGCTTCAGATGCCAATTTCTATAATCAGTCCTCATCAATGCCGATGACACCAGTTTCTAGGCCATAGAGCTGTGTAATACTAGTCTTACTTCACCTATTTGTGCTAACAAATCTTTAAGGAAGTGATGCTTCCCATTAAGGCCTATGAGGAAATCTTGCATCCTCGTGTGCTCCTTAAGTTCTGACGACATAACTAAATGGATTTTGCACATAGTAATAGTTTGTAATTTTACTTCATTTATTAATGTAATGCTTAGAGTCTGGAAAAGTAACTCATCTGGTTGAATCAAGTCTGATTGTTTATATTGTTATTGGTTGGATTTGTTCTGTATTAGACTGAACAAATGTGCTGGTGGATGAGGGACTTGATTGGTCAACAGGTATCTTGTTATAATAGGGTGCTCATCTCTGACTTGTTATGAACAGGTTAGCCCTATGGTAGAAGATGGCGAGTGGCACACTGTTGCTGATATAGTTTTATATGATTATAGGGTTTTGACATGACA

mRNA sequence

GAATGCTTTCAAGTGCCAACGACGATGGACTACGAACACGCGGACTACCTGGTCCAACCCACTCATCAACATACTTCTCTGAAAGTGGCATCCATTTCGTCAATAAAGATTTATCCTCTTGTTCAACAGCCCAGACTGTGTGCACTGCACATTTGATGATGAACAGCTCTGGTTTGCAGAAGTCAATTGCTGTGCATATTGGCATTTGGGAGGAGAGAAAAGTTTTTGGATCTCGAGGGCAGAGTCTTAAGGAAGAGATAATGGGAAAGCATACGGAAACTGGTAACCGAAATGGGAAGCAAGTTAGCGCTAAACTGAAACAATCAGCCAGCGAGTCATTGGATAAAATAGTTTCTGGTTACCAAGTTGTTTTTGGAAGTGAGGTAGATGAAGATGTAGTACTAAGCAGATGCAGCAATTCTATTAGCTATCTTGAGAAACTGGACAAACAAATTGGCGCTGATGTCAATTCAGGGCAATACCATGGAACTTCAATTGCAGAGGATCTGCGGGGACATCATACCATTTTGAGGGACTGCATTGAACAACTAAGAGCAGTTGAAACATCAAGGGCGAGTCTCGTGTCTCATCTGAGAGAGGCTCTTCAAGAACAGGAATTCAAATTGGAGCGAGTCAGAAATCAACTTCAGAATCTCTGCCCTCAATTTCTAAATGGTGAAAATGTGCAACCTATGACTGAGGGGGCCTCAAAAGATGCTCAGTCCTCAATCGCACCACACGGCCTTGTACCGAGGGAGATAGAACAATCAGCGCCAGTAATGTATGCAGCCTCATTACCTTTTCCTGCAAAACCTGCACCTATTGAGGAAGATCCCCGCAAGTCTGCTGCTGCTGCCGTGGCAGCAAAGCTAACTGCATCGACATCCTCGGTTCAGATGCTCTCTTACGTCCTATCTTCCCTGGCATCGGAGGGTGTAATTGGAAATCCAAATAAAGAGTTATCTTGTGACTATCCATCTGAGAAGAGGACCAAACTTGAAAATGACCAGTCACCCTACGTATTGCCTCCGAGTCCACAGCAGCCACCCGTCTCTTCCTTCCCAAACCCGGAGTCTCTCCAACGTAATGCCTCATCGACCAGTCAACAATACACTCCTCCTCCCCCATCATCATCTCCCCCGCCGATCCCTCCATTACCTCCTGTAGTGCAGTTCACACAGAATGTTGGGTCAGTAAGTAGCATGCCTTTCAGTTACAGTATGACACAATCATTGCCACCACTGGCGAAACCTGGCTATCCGAATGTAGGTGCCCCAGTGACTGGGATGTCTCCTTTTACAATACCAACAAATTCTTACCAGAGTTTTCAGGCTTCAGATGCCAATTTCTATAATCAGTCCTCATCAATGCCGATGACACCAAATCTCTGCCCTCAATTTCTAAATGGTGAAAATGTGCAACCTATGACTGAGGGGGCCTCAAAAGATGCTCAGTCCTCAATCGCACCACACGGCCTTGTACCGAGGGAGATAGAACAATCAGCGCCAGTAATGTATGCAGCCTCATTACCTTTTCCTGCAAAACCTGCACCTATTGAGGAAGATCCCCGCAAGTCTGCTGCTGCTGCCGTGGCAGCAAAGCTAACTGCATCGACATCCTCGGTTCAGATGCTCTCTTACGTCCTATCTTCCCTGGCATCGGAGGGTGTAATTGGAAATCCAAATAAAGAGTTATCTTGTGACTATCCATCTGAGAAGAGGACCAAACTTGAAAATGACCAGTCACCCTACGTATTGCCTCCGAGTCCACAGCAGCCACCCGTCTCTTCCTTCCCAAACCCGGAGTCTCTCCAACGTAATGCCTCATCGACCAGTCAACAATACACTCCTCCTCCCCCATCATCATCTCCCCCGCCGATCCCTCCATTACCTCCTGTAGTGCAGTTCACACAGAATGTTGGGTCAGTAAGTAGCATGCCTTTCAGTTACAGTATGACACAATCATTGCCACCACTGGCGAAACCTGGCTATCCGAATGTAGGTGCCCCAGTGACTGGGATGTCTCCTTTTACAATACCAACAAATTCTTACCAGAGTTTTCAGGCTTCAGATGCCAATTTCTATAATCAGTCCTCATCAATGCCGATGACACCAGGTTTTGACATGACA

Coding sequence (CDS)

ATGCTTTCAAGTGCCAACGACGATGGACTACGAACACGCGGACTACCTGGTCCAACCCACTCATCAACATACTTCTCTGAAAGTGGCATCCATTTCGTCAATAAAGATTTATCCTCTTGTTCAACAGCCCAGACTGTGTGCACTGCACATTTGATGATGAACAGCTCTGGTTTGCAGAAGTCAATTGCTGTGCATATTGGCATTTGGGAGGAGAGAAAAGTTTTTGGATCTCGAGGGCAGAGTCTTAAGGAAGAGATAATGGGAAAGCATACGGAAACTGGTAACCGAAATGGGAAGCAAGTTAGCGCTAAACTGAAACAATCAGCCAGCGAGTCATTGGATAAAATAGTTTCTGGTTACCAAGTTGTTTTTGGAAGTGAGGTAGATGAAGATGTAGTACTAAGCAGATGCAGCAATTCTATTAGCTATCTTGAGAAACTGGACAAACAAATTGGCGCTGATGTCAATTCAGGGCAATACCATGGAACTTCAATTGCAGAGGATCTGCGGGGACATCATACCATTTTGAGGGACTGCATTGAACAACTAAGAGCAGTTGAAACATCAAGGGCGAGTCTCGTGTCTCATCTGAGAGAGGCTCTTCAAGAACAGGAATTCAAATTGGAGCGAGTCAGAAATCAACTTCAGAATCTCTGCCCTCAATTTCTAAATGGTGAAAATGTGCAACCTATGACTGAGGGGGCCTCAAAAGATGCTCAGTCCTCAATCGCACCACACGGCCTTGTACCGAGGGAGATAGAACAATCAGCGCCAGTAATGTATGCAGCCTCATTACCTTTTCCTGCAAAACCTGCACCTATTGAGGAAGATCCCCGCAAGTCTGCTGCTGCTGCCGTGGCAGCAAAGCTAACTGCATCGACATCCTCGGTTCAGATGCTCTCTTACGTCCTATCTTCCCTGGCATCGGAGGGTGTAATTGGAAATCCAAATAAAGAGTTATCTTGTGACTATCCATCTGAGAAGAGGACCAAACTTGAAAATGACCAGTCACCCTACGTATTGCCTCCGAGTCCACAGCAGCCACCCGTCTCTTCCTTCCCAAACCCGGAGTCTCTCCAACGTAATGCCTCATCGACCAGTCAACAATACACTCCTCCTCCCCCATCATCATCTCCCCCGCCGATCCCTCCATTACCTCCTGTAGTGCAGTTCACACAGAATGTTGGGTCAGTAAGTAGCATGCCTTTCAGTTACAGTATGACACAATCATTGCCACCACTGGCGAAACCTGGCTATCCGAATGTAGGTGCCCCAGTGACTGGGATGTCTCCTTTTACAATACCAACAAATTCTTACCAGAGTTTTCAGGCTTCAGATGCCAATTTCTATAATCAGTCCTCATCAATGCCGATGACACCAAATCTCTGCCCTCAATTTCTAAATGGTGAAAATGTGCAACCTATGACTGAGGGGGCCTCAAAAGATGCTCAGTCCTCAATCGCACCACACGGCCTTGTACCGAGGGAGATAGAACAATCAGCGCCAGTAATGTATGCAGCCTCATTACCTTTTCCTGCAAAACCTGCACCTATTGAGGAAGATCCCCGCAAGTCTGCTGCTGCTGCCGTGGCAGCAAAGCTAACTGCATCGACATCCTCGGTTCAGATGCTCTCTTACGTCCTATCTTCCCTGGCATCGGAGGGTGTAATTGGAAATCCAAATAAAGAGTTATCTTGTGACTATCCATCTGAGAAGAGGACCAAACTTGAAAATGACCAGTCACCCTACGTATTGCCTCCGAGTCCACAGCAGCCACCCGTCTCTTCCTTCCCAAACCCGGAGTCTCTCCAACGTAATGCCTCATCGACCAGTCAACAATACACTCCTCCTCCCCCATCATCATCTCCCCCGCCGATCCCTCCATTACCTCCTGTAGTGCAGTTCACACAGAATGTTGGGTCAGTAAGTAGCATGCCTTTCAGTTACAGTATGACACAATCATTGCCACCACTGGCGAAACCTGGCTATCCGAATGTAGGTGCCCCAGTGACTGGGATGTCTCCTTTTACAATACCAACAAATTCTTACCAGAGTTTTCAGGCTTCAGATGCCAATTTCTATAATCAGTCCTCATCAATGCCGATGACACCAGGTTTTGACATGACA

Protein sequence

MLSSANDDGLRTRGLPGPTHSSTYFSESGIHFVNKDLSSCSTAQTVCTAHLMMNSSGLQKSIAVHIGIWEERKVFGSRGQSLKEEIMGKHTETGNRNGKQVSAKLKQSASESLDKIVSGYQVVFGSEVDEDVVLSRCSNSISYLEKLDKQIGADVNSGQYHGTSIAEDLRGHHTILRDCIEQLRAVETSRASLVSHLREALQEQEFKLERVRNQLQNLCPQFLNGENVQPMTEGASKDAQSSIAPHGLVPREIEQSAPVMYAASLPFPAKPAPIEEDPRKSAAAAVAAKLTASTSSVQMLSYVLSSLASEGVIGNPNKELSCDYPSEKRTKLENDQSPYVLPPSPQQPPVSSFPNPESLQRNASSTSQQYTPPPPSSSPPPIPPLPPVVQFTQNVGSVSSMPFSYSMTQSLPPLAKPGYPNVGAPVTGMSPFTIPTNSYQSFQASDANFYNQSSSMPMTPNLCPQFLNGENVQPMTEGASKDAQSSIAPHGLVPREIEQSAPVMYAASLPFPAKPAPIEEDPRKSAAAAVAAKLTASTSSVQMLSYVLSSLASEGVIGNPNKELSCDYPSEKRTKLENDQSPYVLPPSPQQPPVSSFPNPESLQRNASSTSQQYTPPPPSSSPPPIPPLPPVVQFTQNVGSVSSMPFSYSMTQSLPPLAKPGYPNVGAPVTGMSPFTIPTNSYQSFQASDANFYNQSSSMPMTPGFDMT

Homology

[Close]

BLAST of Cp4.1LG01g26110 vs. NCBI nr
Match: KAG6602704.1 (Regulation of nuclear pre-mRNA domain-containing protein 1B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 727 bits (1876), Expect = 3.65e-256
Identity = 383/405 (94.57%), Postives = 388/405 (95.80%), Query Frame = 0


Query: 66  IGIWEERKVFGSRGQSLKEEIMGKHTETGNRNGKQVSAKLKQSASESLDKIVSGYQVVFG 125
           IGIWEERKVFGSRGQSLKEEIMGKH ETGNRNGKQVS KLKQSASESLDKIVSGYQ+VFG
Sbjct: 109 IGIWEERKVFGSRGQSLKEEIMGKHMETGNRNGKQVSVKLKQSASESLDKIVSGYQIVFG 168

Query: 126 SEVDEDVVLSRCSNSISYLEKLDKQIGADVNSGQYHGTSIAEDLRGHHTILRDCIEQLRA 185
           SEVDEDVVLSRCSNSISYLEKLDKQIGADVNSGQYHGTSIAEDLR HHTILRDCIEQLRA
Sbjct: 169 SEVDEDVVLSRCSNSISYLEKLDKQIGADVNSGQYHGTSIAEDLRRHHTILRDCIEQLRA 228

Query: 186 VETSRASLVSHLREALQEQEFKLERVRNQLQ----------NLCPQFLNGENVQPMTEGA 245
           +ETSRASLVSHLREALQEQEFKLERVRNQLQ          NLCPQFLNGENVQPMT+GA
Sbjct: 229 IETSRASLVSHLREALQEQEFKLERVRNQLQASQSQSEQTQNLCPQFLNGENVQPMTDGA 288

Query: 246 SKDAQSSIAPHGLVPREIEQSAPVMYAASLPFPAKPAPIEEDPRKSAAAAVAAKLTASTS 305
           SKDAQSSIAPHGLVPREIEQSAPVMYAASLPFPAKPAPIEEDPRKSAAAAVAAKLTASTS
Sbjct: 289 SKDAQSSIAPHGLVPREIEQSAPVMYAASLPFPAKPAPIEEDPRKSAAAAVAAKLTASTS 348

Query: 306 SVQMLSYVLSSLASEGVIGNPNKELSCDYPSEKRTKLENDQSPYVLPPSPQQPPVSSFPN 365
           SVQMLSYVLSSLASEGVIGNPNKELSCDYPSEKRTKLENDQSPYVLPP+PQQPPVSSFP+
Sbjct: 349 SVQMLSYVLSSLASEGVIGNPNKELSCDYPSEKRTKLENDQSPYVLPPNPQQPPVSSFPH 408

Query: 366 PESLQRNASSTSQQYTPPPPSSSPPPIPPLPPVVQFTQNVGSVSSMPFSYSMTQSLPPLA 425
           PESLQRNASSTSQ YTPPPPSSSPP IPPLPPVVQFTQNVGSVSSMPFSYSMTQSLPPLA
Sbjct: 409 PESLQRNASSTSQPYTPPPPSSSPPLIPPLPPVVQFTQNVGSVSSMPFSYSMTQSLPPLA 468

Query: 426 KPGYPNVGAPVTGMSPFTIPTNSYQSFQASDANFYNQSSSMPMTP 460
           KPGYPNVGAPVTGMSPFTIPTNSYQSFQ SDANFYNQSSSMPM P
Sbjct: 469 KPGYPNVGAPVTGMSPFTIPTNSYQSFQGSDANFYNQSSSMPMAP 513

[Close]

BLAST of Cp4.1LG01g26110 vs. NCBI nr
Match: KAG7033391.1 (Regulation of nuclear pre-mRNA domain-containing protein 1B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 726 bits (1875), Expect = 5.17e-256
Identity = 382/405 (94.32%), Postives = 388/405 (95.80%), Query Frame = 0


Query: 66  IGIWEERKVFGSRGQSLKEEIMGKHTETGNRNGKQVSAKLKQSASESLDKIVSGYQVVFG 125
           IGIWEERKVFGSRGQSLKEEIMGKHTETGNRNGKQV AKLKQSAS SLDKIVSGYQVVFG
Sbjct: 109 IGIWEERKVFGSRGQSLKEEIMGKHTETGNRNGKQVRAKLKQSASISLDKIVSGYQVVFG 168

Query: 126 SEVDEDVVLSRCSNSISYLEKLDKQIGADVNSGQYHGTSIAEDLRGHHTILRDCIEQLRA 185
           SEVDEDVVLSRCSN+ISYLEKLDK+IGADVNSGQYHGTSIAEDLRGHHTILRDCIEQLRA
Sbjct: 169 SEVDEDVVLSRCSNTISYLEKLDKEIGADVNSGQYHGTSIAEDLRGHHTILRDCIEQLRA 228

Query: 186 VETSRASLVSHLREALQEQEFKLERVRNQLQ----------NLCPQFLNGENVQPMTEGA 245
           +ETSRASLVSHLREALQEQEFKLERVRNQLQ          NLCPQFLNGENVQP+TEGA
Sbjct: 229 IETSRASLVSHLREALQEQEFKLERVRNQLQASQSRSEQTQNLCPQFLNGENVQPVTEGA 288

Query: 246 SKDAQSSIAPHGLVPREIEQSAPVMYAASLPFPAKPAPIEEDPRKSAAAAVAAKLTASTS 305
           SKDAQSSIAPHGLVPREIEQS PVMYAASLPFPAKPAPIEEDPRKSAAAAVAAKLTAS S
Sbjct: 289 SKDAQSSIAPHGLVPREIEQSTPVMYAASLPFPAKPAPIEEDPRKSAAAAVAAKLTASKS 348

Query: 306 SVQMLSYVLSSLASEGVIGNPNKELSCDYPSEKRTKLENDQSPYVLPPSPQQPPVSSFPN 365
           SVQMLSYVLSSLASEGVIGNPNKELSCDYPSEKRTKLENDQSPYVLPP+PQQPPVSSFP+
Sbjct: 349 SVQMLSYVLSSLASEGVIGNPNKELSCDYPSEKRTKLENDQSPYVLPPNPQQPPVSSFPH 408

Query: 366 PESLQRNASSTSQQYTPPPPSSSPPPIPPLPPVVQFTQNVGSVSSMPFSYSMTQSLPPLA 425
           PESLQRNASSTSQ YTPPPPSSSPPPIPPLPPVVQFTQNVGSVSSMPFSYSMTQSLPPLA
Sbjct: 409 PESLQRNASSTSQPYTPPPPSSSPPPIPPLPPVVQFTQNVGSVSSMPFSYSMTQSLPPLA 468

Query: 426 KPGYPNVGAPVTGMSPFTIPTNSYQSFQASDANFYNQSSSMPMTP 460
           KPGYPNVGAPVTGMSPFTIPTNSYQSFQ SDANFYNQSSSMPM P
Sbjct: 469 KPGYPNVGAPVTGMSPFTIPTNSYQSFQGSDANFYNQSSSMPMAP 513

[Close]

BLAST of Cp4.1LG01g26110 vs. NCBI nr
Match: XP_022922040.1 (regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucurbita moschata] >XP_022922048.1 regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucurbita moschata] >XP_022922056.1 regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucurbita moschata])

HSP 1 Score: 725 bits (1871), Expect = 2.09e-255
Identity = 380/405 (93.83%), Postives = 388/405 (95.80%), Query Frame = 0


Query: 66  IGIWEERKVFGSRGQSLKEEIMGKHTETGNRNGKQVSAKLKQSASESLDKIVSGYQVVFG 125
           IGIWEERKVFGSRGQSLKEEIMGKHTETGNRNGKQVSAKLKQS S SLDKIVSGYQVVFG
Sbjct: 109 IGIWEERKVFGSRGQSLKEEIMGKHTETGNRNGKQVSAKLKQSGSISLDKIVSGYQVVFG 168

Query: 126 SEVDEDVVLSRCSNSISYLEKLDKQIGADVNSGQYHGTSIAEDLRGHHTILRDCIEQLRA 185
           SEVDEDVVLSRCSN+ISYLEKLDK+IGADVNSGQYHGTSIAEDLRGHHTILRDCIEQLRA
Sbjct: 169 SEVDEDVVLSRCSNTISYLEKLDKEIGADVNSGQYHGTSIAEDLRGHHTILRDCIEQLRA 228

Query: 186 VETSRASLVSHLREALQEQEFKLERVRNQLQ----------NLCPQFLNGENVQPMTEGA 245
           +ETSRASLVSHLREALQEQEFKLERVRNQLQ          NLCPQFLNGENVQP+TEGA
Sbjct: 229 IETSRASLVSHLREALQEQEFKLERVRNQLQASQSRSEQTQNLCPQFLNGENVQPVTEGA 288

Query: 246 SKDAQSSIAPHGLVPREIEQSAPVMYAASLPFPAKPAPIEEDPRKSAAAAVAAKLTASTS 305
           SKDAQSSIAPHGLVPREIEQS PVMYAASLPFPAKPAPIEEDPRKSAAAAVAAKLTASTS
Sbjct: 289 SKDAQSSIAPHGLVPREIEQSTPVMYAASLPFPAKPAPIEEDPRKSAAAAVAAKLTASTS 348

Query: 306 SVQMLSYVLSSLASEGVIGNPNKELSCDYPSEKRTKLENDQSPYVLPPSPQQPPVSSFPN 365
           SVQMLSYVLSSLASEGVIGNPNKELSCDYPSEKRTKLENDQSPYVLPP+PQQPPVSSFP+
Sbjct: 349 SVQMLSYVLSSLASEGVIGNPNKELSCDYPSEKRTKLENDQSPYVLPPNPQQPPVSSFPH 408

Query: 366 PESLQRNASSTSQQYTPPPPSSSPPPIPPLPPVVQFTQNVGSVSSMPFSYSMTQSLPPLA 425
           PESLQRNASSTSQ YTPPPPSSSPPPIPPLPPVVQFTQNVGSVSSMPFSY+MTQSLPPLA
Sbjct: 409 PESLQRNASSTSQPYTPPPPSSSPPPIPPLPPVVQFTQNVGSVSSMPFSYTMTQSLPPLA 468

Query: 426 KPGYPNVGAPVTGMSPFTIPTNSYQSFQASDANFYNQSSSMPMTP 460
           KPGYPNVGAPV GMSPFTIPTNSYQSFQ SDANFYNQ+SSMPM P
Sbjct: 469 KPGYPNVGAPVAGMSPFTIPTNSYQSFQGSDANFYNQTSSMPMAP 513

[Close]

BLAST of Cp4.1LG01g26110 vs. NCBI nr
Match: XP_022989894.1 (UPF0400 protein C337.03-like [Cucurbita maxima] >XP_022989895.1 UPF0400 protein C337.03-like [Cucurbita maxima] >XP_022989896.1 UPF0400 protein C337.03-like [Cucurbita maxima])

HSP 1 Score: 724 bits (1868), Expect = 5.97e-255
Identity = 378/405 (93.33%), Postives = 388/405 (95.80%), Query Frame = 0


Query: 66  IGIWEERKVFGSRGQSLKEEIMGKHTETGNRNGKQVSAKLKQSASESLDKIVSGYQVVFG 125
           IGIWEERKVFGSRG+SLKEE+MGKHTETGNRNGKQVS KLKQSASESLDKIVSGYQVVFG
Sbjct: 109 IGIWEERKVFGSRGESLKEEMMGKHTETGNRNGKQVSVKLKQSASESLDKIVSGYQVVFG 168

Query: 126 SEVDEDVVLSRCSNSISYLEKLDKQIGADVNSGQYHGTSIAEDLRGHHTILRDCIEQLRA 185
           SEV+EDV+LSRCSNSI+YLEKLDKQIGADVNSGQYHGTSIAEDLRGHHTILRDC+EQLRA
Sbjct: 169 SEVNEDVLLSRCSNSINYLEKLDKQIGADVNSGQYHGTSIAEDLRGHHTILRDCVEQLRA 228

Query: 186 VETSRASLVSHLREALQEQEFKLERVRNQLQ----------NLCPQFLNGENVQPMTEGA 245
           +ETSRASLVSHLREALQEQEFKLERVRNQLQ          NLCPQFLNGE+VQPMTEGA
Sbjct: 229 IETSRASLVSHLREALQEQEFKLERVRNQLQASQSRSEQTQNLCPQFLNGESVQPMTEGA 288

Query: 246 SKDAQSSIAPHGLVPREIEQSAPVMYAASLPFPAKPAPIEEDPRKSAAAAVAAKLTASTS 305
           SKDAQSSIAPHGLVPREIEQSAPVMYAASLPFPAKPAPIEEDPRKSAAAAVAAKLTASTS
Sbjct: 289 SKDAQSSIAPHGLVPREIEQSAPVMYAASLPFPAKPAPIEEDPRKSAAAAVAAKLTASTS 348

Query: 306 SVQMLSYVLSSLASEGVIGNPNKELSCDYPSEKRTKLENDQSPYVLPPSPQQPPVSSFPN 365
           SVQMLSYVLSSLASEGVIGNPNKELSCDYPSEKR KLENDQSPYVLPP+PQQPPV SFP+
Sbjct: 349 SVQMLSYVLSSLASEGVIGNPNKELSCDYPSEKRAKLENDQSPYVLPPNPQQPPVDSFPH 408

Query: 366 PESLQRNASSTSQQYTPPPPSSSPPPIPPLPPVVQFTQNVGSVSSMPFSYSMTQSLPPLA 425
           PESLQRNASSTSQQY PPPPSSSPPPIPPLPP VQFTQNVGSVSSMPFSYSMTQSLPPLA
Sbjct: 409 PESLQRNASSTSQQYPPPPPSSSPPPIPPLPPAVQFTQNVGSVSSMPFSYSMTQSLPPLA 468

Query: 426 KPGYPNVGAPVTGMSPFTIPTNSYQSFQASDANFYNQSSSMPMTP 460
           KPGYPNVGAPVTGMSPFTIPTNSYQSFQ SDANFYNQSSSMPM P
Sbjct: 469 KPGYPNVGAPVTGMSPFTIPTNSYQSFQGSDANFYNQSSSMPMAP 513

[Close]

BLAST of Cp4.1LG01g26110 vs. NCBI nr
Match: XP_023517949.1 (regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 721 bits (1860), Expect = 9.77e-254
Identity = 382/405 (94.32%), Postives = 385/405 (95.06%), Query Frame = 0


Query: 66  IGIWEERKVFGSRGQSLKEEIMGKHTETGNRNGKQVSAKLKQSASESLDKIVSGYQVVFG 125
           IGIWEERKVFGSRGQSLKEEIMGK  ETGNRNGK  S+KLKQS S SLDKIVS YQVV+ 
Sbjct: 109 IGIWEERKVFGSRGQSLKEEIMGKSLETGNRNGKHFSSKLKQSGSISLDKIVSCYQVVYR 168

Query: 126 SEVDEDVVLSRCSNSISYLEKLDKQIGADVNSGQYHGTSIAEDLRGHHTILRDCIEQLRA 185
           SEVDED VLS+C NSISYLEKLDKQIGADVNSGQYHGTSIAEDLRGHHTILRDCIEQLRA
Sbjct: 169 SEVDEDAVLSKCRNSISYLEKLDKQIGADVNSGQYHGTSIAEDLRGHHTILRDCIEQLRA 228

Query: 186 VETSRASLVSHLREALQEQEFKLERVRNQLQ----------NLCPQFLNGENVQPMTEGA 245
           VETSRASLVSHLREALQEQEFKLERVRNQLQ          NLCPQFLNGENVQPMTEGA
Sbjct: 229 VETSRASLVSHLREALQEQEFKLERVRNQLQASQSRSEQTQNLCPQFLNGENVQPMTEGA 288

Query: 246 SKDAQSSIAPHGLVPREIEQSAPVMYAASLPFPAKPAPIEEDPRKSAAAAVAAKLTASTS 305
           SKDAQSSIAPHGLVPREIEQSAPVMYAASLPFPAKPAPIEEDPRKSAAAAVAAKLTASTS
Sbjct: 289 SKDAQSSIAPHGLVPREIEQSAPVMYAASLPFPAKPAPIEEDPRKSAAAAVAAKLTASTS 348

Query: 306 SVQMLSYVLSSLASEGVIGNPNKELSCDYPSEKRTKLENDQSPYVLPPSPQQPPVSSFPN 365
           SVQMLSYVLSSLASEGVIGNPNKELSCDYPSEKRTKLENDQSPYVLPPSPQQPPVSSFPN
Sbjct: 349 SVQMLSYVLSSLASEGVIGNPNKELSCDYPSEKRTKLENDQSPYVLPPSPQQPPVSSFPN 408

Query: 366 PESLQRNASSTSQQYTPPPPSSSPPPIPPLPPVVQFTQNVGSVSSMPFSYSMTQSLPPLA 425
           PESLQRNASSTSQQYTPPPPSSSPPPIPPLPPVVQFTQNVGSVSSMPFSYSMTQSLPPLA
Sbjct: 409 PESLQRNASSTSQQYTPPPPSSSPPPIPPLPPVVQFTQNVGSVSSMPFSYSMTQSLPPLA 468

Query: 426 KPGYPNVGAPVTGMSPFTIPTNSYQSFQASDANFYNQSSSMPMTP 460
           KPGYPNVGAPVTGMSPFTIPTNSYQSFQASDANFYNQSSSMPMTP
Sbjct: 469 KPGYPNVGAPVTGMSPFTIPTNSYQSFQASDANFYNQSSSMPMTP 513

[Close]

BLAST of Cp4.1LG01g26110 vs. ExPASy TrEMBL
Match: A0A6J1E332 (regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Cucurbita moschata OX=3662 GN=LOC111430106 PE=4 SV=1)

HSP 1 Score: 725 bits (1871), Expect = 1.01e-255
Identity = 380/405 (93.83%), Postives = 388/405 (95.80%), Query Frame = 0


Query: 66  IGIWEERKVFGSRGQSLKEEIMGKHTETGNRNGKQVSAKLKQSASESLDKIVSGYQVVFG 125
           IGIWEERKVFGSRGQSLKEEIMGKHTETGNRNGKQVSAKLKQS S SLDKIVSGYQVVFG
Sbjct: 109 IGIWEERKVFGSRGQSLKEEIMGKHTETGNRNGKQVSAKLKQSGSISLDKIVSGYQVVFG 168

Query: 126 SEVDEDVVLSRCSNSISYLEKLDKQIGADVNSGQYHGTSIAEDLRGHHTILRDCIEQLRA 185
           SEVDEDVVLSRCSN+ISYLEKLDK+IGADVNSGQYHGTSIAEDLRGHHTILRDCIEQLRA
Sbjct: 169 SEVDEDVVLSRCSNTISYLEKLDKEIGADVNSGQYHGTSIAEDLRGHHTILRDCIEQLRA 228

Query: 186 VETSRASLVSHLREALQEQEFKLERVRNQLQ----------NLCPQFLNGENVQPMTEGA 245
           +ETSRASLVSHLREALQEQEFKLERVRNQLQ          NLCPQFLNGENVQP+TEGA
Sbjct: 229 IETSRASLVSHLREALQEQEFKLERVRNQLQASQSRSEQTQNLCPQFLNGENVQPVTEGA 288

Query: 246 SKDAQSSIAPHGLVPREIEQSAPVMYAASLPFPAKPAPIEEDPRKSAAAAVAAKLTASTS 305
           SKDAQSSIAPHGLVPREIEQS PVMYAASLPFPAKPAPIEEDPRKSAAAAVAAKLTASTS
Sbjct: 289 SKDAQSSIAPHGLVPREIEQSTPVMYAASLPFPAKPAPIEEDPRKSAAAAVAAKLTASTS 348

Query: 306 SVQMLSYVLSSLASEGVIGNPNKELSCDYPSEKRTKLENDQSPYVLPPSPQQPPVSSFPN 365
           SVQMLSYVLSSLASEGVIGNPNKELSCDYPSEKRTKLENDQSPYVLPP+PQQPPVSSFP+
Sbjct: 349 SVQMLSYVLSSLASEGVIGNPNKELSCDYPSEKRTKLENDQSPYVLPPNPQQPPVSSFPH 408

Query: 366 PESLQRNASSTSQQYTPPPPSSSPPPIPPLPPVVQFTQNVGSVSSMPFSYSMTQSLPPLA 425
           PESLQRNASSTSQ YTPPPPSSSPPPIPPLPPVVQFTQNVGSVSSMPFSY+MTQSLPPLA
Sbjct: 409 PESLQRNASSTSQPYTPPPPSSSPPPIPPLPPVVQFTQNVGSVSSMPFSYTMTQSLPPLA 468

Query: 426 KPGYPNVGAPVTGMSPFTIPTNSYQSFQASDANFYNQSSSMPMTP 460
           KPGYPNVGAPV GMSPFTIPTNSYQSFQ SDANFYNQ+SSMPM P
Sbjct: 469 KPGYPNVGAPVAGMSPFTIPTNSYQSFQGSDANFYNQTSSMPMAP 513

[Close]

BLAST of Cp4.1LG01g26110 vs. ExPASy TrEMBL
Match: A0A6J1JNM2 (UPF0400 protein C337.03-like OS=Cucurbita maxima OX=3661 GN=LOC111486946 PE=4 SV=1)

HSP 1 Score: 724 bits (1868), Expect = 2.89e-255
Identity = 378/405 (93.33%), Postives = 388/405 (95.80%), Query Frame = 0


Query: 66  IGIWEERKVFGSRGQSLKEEIMGKHTETGNRNGKQVSAKLKQSASESLDKIVSGYQVVFG 125
           IGIWEERKVFGSRG+SLKEE+MGKHTETGNRNGKQVS KLKQSASESLDKIVSGYQVVFG
Sbjct: 109 IGIWEERKVFGSRGESLKEEMMGKHTETGNRNGKQVSVKLKQSASESLDKIVSGYQVVFG 168

Query: 126 SEVDEDVVLSRCSNSISYLEKLDKQIGADVNSGQYHGTSIAEDLRGHHTILRDCIEQLRA 185
           SEV+EDV+LSRCSNSI+YLEKLDKQIGADVNSGQYHGTSIAEDLRGHHTILRDC+EQLRA
Sbjct: 169 SEVNEDVLLSRCSNSINYLEKLDKQIGADVNSGQYHGTSIAEDLRGHHTILRDCVEQLRA 228

Query: 186 VETSRASLVSHLREALQEQEFKLERVRNQLQ----------NLCPQFLNGENVQPMTEGA 245
           +ETSRASLVSHLREALQEQEFKLERVRNQLQ          NLCPQFLNGE+VQPMTEGA
Sbjct: 229 IETSRASLVSHLREALQEQEFKLERVRNQLQASQSRSEQTQNLCPQFLNGESVQPMTEGA 288

Query: 246 SKDAQSSIAPHGLVPREIEQSAPVMYAASLPFPAKPAPIEEDPRKSAAAAVAAKLTASTS 305
           SKDAQSSIAPHGLVPREIEQSAPVMYAASLPFPAKPAPIEEDPRKSAAAAVAAKLTASTS
Sbjct: 289 SKDAQSSIAPHGLVPREIEQSAPVMYAASLPFPAKPAPIEEDPRKSAAAAVAAKLTASTS 348

Query: 306 SVQMLSYVLSSLASEGVIGNPNKELSCDYPSEKRTKLENDQSPYVLPPSPQQPPVSSFPN 365
           SVQMLSYVLSSLASEGVIGNPNKELSCDYPSEKR KLENDQSPYVLPP+PQQPPV SFP+
Sbjct: 349 SVQMLSYVLSSLASEGVIGNPNKELSCDYPSEKRAKLENDQSPYVLPPNPQQPPVDSFPH 408

Query: 366 PESLQRNASSTSQQYTPPPPSSSPPPIPPLPPVVQFTQNVGSVSSMPFSYSMTQSLPPLA 425
           PESLQRNASSTSQQY PPPPSSSPPPIPPLPP VQFTQNVGSVSSMPFSYSMTQSLPPLA
Sbjct: 409 PESLQRNASSTSQQYPPPPPSSSPPPIPPLPPAVQFTQNVGSVSSMPFSYSMTQSLPPLA 468

Query: 426 KPGYPNVGAPVTGMSPFTIPTNSYQSFQASDANFYNQSSSMPMTP 460
           KPGYPNVGAPVTGMSPFTIPTNSYQSFQ SDANFYNQSSSMPM P
Sbjct: 469 KPGYPNVGAPVTGMSPFTIPTNSYQSFQGSDANFYNQSSSMPMAP 513

[Close]

BLAST of Cp4.1LG01g26110 vs. ExPASy TrEMBL
Match: A0A5D3C5Q5 (UPF0400 protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G001490 PE=4 SV=1)

HSP 1 Score: 639 bits (1649), Expect = 2.02e-222
Identity = 342/416 (82.21%), Postives = 364/416 (87.50%), Query Frame = 0


Query: 66  IGIWEERKVFGSRGQSLKEEIMGKHTETGNRNGKQVSAKLKQSASESLDKIVSGYQVVFG 125
           IGIWEERKVFGSRGQSLKEEIMGKH ETGNRNGK  ++KLKQSAS SLDKIVSGYQVV+G
Sbjct: 75  IGIWEERKVFGSRGQSLKEEIMGKHLETGNRNGKPFNSKLKQSASVSLDKIVSGYQVVYG 134

Query: 126 SEVDEDVVLSRCSNSISYLEKLDKQIGADVNSGQYHGTSIAEDLRGHHTILRDCIEQLRA 185
            E+DED VLS+C NSISYLEKLDK+IGADVNSGQY G+SIA+DLRGHHTILRDCIEQL  
Sbjct: 135 KEIDEDAVLSKCRNSISYLEKLDKEIGADVNSGQYRGSSIADDLRGHHTILRDCIEQLTT 194

Query: 186 VETSRASLVSHLREALQEQEFKLERVRNQLQ----------NLCPQFLNGENVQPMTEGA 245
           +ETSRASLVSHLREALQEQEFKLE+VRNQLQ          NLC QFLNGENVQPMTE  
Sbjct: 195 IETSRASLVSHLREALQEQEFKLEQVRNQLQASHSQSEQTQNLCRQFLNGENVQPMTEEG 254

Query: 246 SKDAQSSIAPHGLVPREIEQSAPVMYAASLPFPAKPAPIEEDPRKSAAAAVAAKLTASTS 305
           SKDAQ+S+APH LVPRE EQSAPVMYAAS+PFP+KP P EEDPRKSAAAAVAAKLTASTS
Sbjct: 255 SKDAQTSVAPHSLVPREREQSAPVMYAASVPFPSKPGPSEEDPRKSAAAAVAAKLTASTS 314

Query: 306 SVQMLSYVLSSLASEGVIGNPNKELSCDYPSEKRTKLENDQSPYVLPPSPQQPPVSSFPN 365
           SVQMLSYVLSSLASEGVIGNPNK+L  DYPSEKR KLENDQ PY LPP+PQ+PPVSSFP+
Sbjct: 315 SVQMLSYVLSSLASEGVIGNPNKDLPGDYPSEKRPKLENDQLPYALPPNPQRPPVSSFPH 374

Query: 366 PESLQRNASSTSQQYTP----PPPSSSPPPIPPLPPVVQF-----TQNVGSVSSMP--FS 425
           PESLQ N SSTSQQYTP    PPPSSSPPP+PPLPPV QF     TQN GSVSS+P  +S
Sbjct: 375 PESLQHNTSSTSQQYTPSDPPPPPSSSPPPMPPLPPVAQFPLPQFTQNAGSVSSIPIPYS 434

Query: 426 YSMTQSLPPLAKPGYPNVGAPVTGMSPFTIPTNSYQSFQASDANFYNQSSSMPMTP 460
           YSMTQSLPPLA PGYPN GAPVTGMSPFTIPTNSYQ+FQA D NFYNQSSSMPM P
Sbjct: 435 YSMTQSLPPLAMPGYPNAGAPVTGMSPFTIPTNSYQNFQAPDGNFYNQSSSMPMAP 490

[Close]

BLAST of Cp4.1LG01g26110 vs. ExPASy TrEMBL
Match: A0A1S3B3N2 (UPF0400 protein C337.03 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485437 PE=4 SV=1)

HSP 1 Score: 639 bits (1649), Expect = 6.85e-222
Identity = 342/416 (82.21%), Postives = 364/416 (87.50%), Query Frame = 0


Query: 66  IGIWEERKVFGSRGQSLKEEIMGKHTETGNRNGKQVSAKLKQSASESLDKIVSGYQVVFG 125
           IGIWEERKVFGSRGQSLKEEIMGKH ETGNRNGK  ++KLKQSAS SLDKIVSGYQVV+G
Sbjct: 109 IGIWEERKVFGSRGQSLKEEIMGKHLETGNRNGKPFNSKLKQSASVSLDKIVSGYQVVYG 168

Query: 126 SEVDEDVVLSRCSNSISYLEKLDKQIGADVNSGQYHGTSIAEDLRGHHTILRDCIEQLRA 185
            E+DED VLS+C NSISYLEKLDK+IGADVNSGQY G+SIA+DLRGHHTILRDCIEQL  
Sbjct: 169 KEIDEDAVLSKCRNSISYLEKLDKEIGADVNSGQYRGSSIADDLRGHHTILRDCIEQLTT 228

Query: 186 VETSRASLVSHLREALQEQEFKLERVRNQLQ----------NLCPQFLNGENVQPMTEGA 245
           +ETSRASLVSHLREALQEQEFKLE+VRNQLQ          NLC QFLNGENVQPMTE  
Sbjct: 229 IETSRASLVSHLREALQEQEFKLEQVRNQLQASHSQSEQTQNLCRQFLNGENVQPMTEEG 288

Query: 246 SKDAQSSIAPHGLVPREIEQSAPVMYAASLPFPAKPAPIEEDPRKSAAAAVAAKLTASTS 305
           SKDAQ+S+APH LVPRE EQSAPVMYAAS+PFP+KP P EEDPRKSAAAAVAAKLTASTS
Sbjct: 289 SKDAQTSVAPHSLVPREREQSAPVMYAASVPFPSKPGPSEEDPRKSAAAAVAAKLTASTS 348

Query: 306 SVQMLSYVLSSLASEGVIGNPNKELSCDYPSEKRTKLENDQSPYVLPPSPQQPPVSSFPN 365
           SVQMLSYVLSSLASEGVIGNPNK+L  DYPSEKR KLENDQ PY LPP+PQ+PPVSSFP+
Sbjct: 349 SVQMLSYVLSSLASEGVIGNPNKDLPGDYPSEKRPKLENDQLPYALPPNPQRPPVSSFPH 408

Query: 366 PESLQRNASSTSQQYTP----PPPSSSPPPIPPLPPVVQF-----TQNVGSVSSMP--FS 425
           PESLQ N SSTSQQYTP    PPPSSSPPP+PPLPPV QF     TQN GSVSS+P  +S
Sbjct: 409 PESLQHNTSSTSQQYTPSDPPPPPSSSPPPMPPLPPVAQFPLPQFTQNAGSVSSIPIPYS 468

Query: 426 YSMTQSLPPLAKPGYPNVGAPVTGMSPFTIPTNSYQSFQASDANFYNQSSSMPMTP 460
           YSMTQSLPPLA PGYPN GAPVTGMSPFTIPTNSYQ+FQA D NFYNQSSSMPM P
Sbjct: 469 YSMTQSLPPLAMPGYPNAGAPVTGMSPFTIPTNSYQNFQAPDGNFYNQSSSMPMAP 524

[Close]

BLAST of Cp4.1LG01g26110 vs. ExPASy TrEMBL
Match: A0A6J1DG44 (UPF0400 protein C337.03 OS=Momordica charantia OX=3673 GN=LOC111020199 PE=4 SV=1)

HSP 1 Score: 635 bits (1639), Expect = 2.08e-220
Identity = 340/414 (82.13%), Postives = 363/414 (87.68%), Query Frame = 0


Query: 66  IGIWEERKVFGSRGQSLKEEIMGKHTETGNRNGKQVSAKLKQSASESLDKIVSGYQVVFG 125
           IGIWEERKVFGSRGQSLKEEIMGKH ETGNRNGKQ S KLKQS S SLDKIV+GYQVV+G
Sbjct: 109 IGIWEERKVFGSRGQSLKEEIMGKHVETGNRNGKQFSVKLKQSTSTSLDKIVAGYQVVYG 168

Query: 126 SEVDEDVVLSRCSNSISYLEKLDKQIGADVNSGQYHGTSIAEDLRGHHTILRDCIEQLRA 185
           +E+DEDVVLS+C NSISYLEKLDK+IGADVNSGQYHG+S++EDL+ HHTILR CIEQL A
Sbjct: 169 TEIDEDVVLSKCRNSISYLEKLDKEIGADVNSGQYHGSSVSEDLQRHHTILRGCIEQLTA 228

Query: 186 VETSRASLVSHLREALQEQEFKLERVRNQLQ----------NLCPQFLNGENVQPMTEGA 245
           +E+SRA+LVSHLREALQEQEFKL+ VRNQLQ          NL  QFLNGENVQPM E A
Sbjct: 229 IESSRANLVSHLREALQEQEFKLDEVRNQLQASHSQSEQTQNLSRQFLNGENVQPMAEEA 288

Query: 246 SKDAQSSIAPHGLVPREIEQSAPVMYAASLPFPAKPAPIEEDPRKSAAAAVAAKLTASTS 305
           SKDAQ+SIAPH LVPRE EQSAPVMYAASLPFPAKP P EEDPRKSAAAAVAAKLTASTS
Sbjct: 289 SKDAQTSIAPHSLVPREREQSAPVMYAASLPFPAKPGPNEEDPRKSAAAAVAAKLTASTS 348

Query: 306 SVQMLSYVLSSLASEGVIGNPNKELSCDYPSEKRTKLENDQSPYVLPPSPQQPPVSSFPN 365
           SVQMLSYVLSSLASEGVIGNP KE S DYPSEKR KLENDQ PY LPP+PQ+PPVSSFP+
Sbjct: 349 SVQMLSYVLSSLASEGVIGNPIKESSSDYPSEKRPKLENDQPPYTLPPNPQRPPVSSFPH 408

Query: 366 PESLQRNASSTSQQYTP----PPPSSSPPPIPPLPPVVQF-----TQNVGSVSSMPFSYS 425
           PESLQ NASSTSQQYTP    PPPSSSPPP+PPLPPVVQF     TQN GSVSS+P+SYS
Sbjct: 409 PESLQHNASSTSQQYTPTDPPPPPSSSPPPMPPLPPVVQFPLPQFTQNAGSVSSVPYSYS 468

Query: 426 MTQSLPPLAKPGYPNVGAPVTGMSPFTIPTNSYQSFQASDANFYNQSSSMPMTP 460
           +TQ L PLA PGYPNVG PVTGMSPFTIPTNSYQ+FQASD NFYNQSSSMPM P
Sbjct: 469 LTQPLQPLAMPGYPNVGTPVTGMSPFTIPTNSYQNFQASDGNFYNQSSSMPMAP 522

[Close]

BLAST of Cp4.1LG01g26110 vs. TAIR 10
Match: AT3G26990.1 (ENTH/VHS family protein )

HSP 1 Score: 276.9 bits (707), Expect = 4.4e-74
Identity = 191/436 (43.81%), Postives = 254/436 (58.26%), Query Frame = 0


Query: 59  QKSIAVHIGIWEERKVFGSRGQSLKEEIMGKHTETGNRNGKQVSAKL----KQSASESLD 118
           +KS    + IWEERKVFGSRGQ LKEE++G+  E G RNG  V  KL    +Q    +L+
Sbjct: 102 RKSARRLVNIWEERKVFGSRGQILKEELLGRQPENGTRNGNLVPLKLSVPQRQVNGSTLE 161

Query: 119 KIVSGYQVVFGSEVDEDVVLSRCSNSISYLEKLDKQIGADVNSGQYHGTSIAEDLRGHHT 178
           K+VS  +V+ G ++DED ++ + +N+  YLEK  +++  D++SG   G ++ ++L+G H 
Sbjct: 162 KVVSAVEVLHGVQIDEDALVGKSTNAAGYLEKATQEVERDLSSGHAPGPAVVKELQGQHV 221

Query: 179 ILRDCIEQLRAVETSRASLVSHLREALQEQEFKLERVRNQLQ----------NLCPQFLN 238
           ILRDCIEQL A+ETSR SL+SHLREALQEQE KLE+VRN LQ          +LC Q L+
Sbjct: 222 ILRDCIEQLGAMETSRTSLISHLREALQEQELKLEQVRNHLQIARFQSDRTGDLCRQLLD 281

Query: 239 --GENVQPMTEGAS-----KDAQSSIAPHGLVPREIEQSAPVMYAASLPFPAKPAPIEED 298
             G +  P TE        K + ++ AP      ++EQSAPVM+A++      P    ED
Sbjct: 282 HGGSSQPPATEEEESKEVIKVSSTAAAPQSFTHSDVEQSAPVMFASN------PTQSLED 341

Query: 299 PRKSAAAAVAAKLTASTSSVQMLSYVLSSLASEGVIGNPNKEL------SCDYPSEKRTK 358
           PRK+AAAAV AKLTASTSS +MLSYVLSSLASEG+IGN N         S D+P EKR K
Sbjct: 342 PRKTAAAAVVAKLTASTSSAEMLSYVLSSLASEGIIGNNNPPAVTETLSSVDFPPEKRPK 401

Query: 359 LENDQSPYVLPPSPQQPPVSSFPNPESLQRNASSTSQQYTPPPPSSSPPPIPPLPPVVQF 418
           L+N    Y+ P                  +N ++TS   TPP P   PPP    P  +Q 
Sbjct: 402 LQNHDQSYLSPH----------------HQNTATTSSS-TPPQPLPPPPPFQLQPQFLQP 461

Query: 419 TQNVGSVSSMPFSYSM------TQSLPPLAKPGYPNVGAPVTGMSPFTIPT-NSYQSFQA 461
            Q  G V+  PF+Y++      TQ       P  P     +T +S  + P+ NSYQ FQ 
Sbjct: 462 LQPPGPVNHTPFNYTIATSTATTQQQQQEQGPWVPG----LTQLSTTSAPSENSYQKFQG 509

[Close]

BLAST of Cp4.1LG01g26110 vs. TAIR 10
Match: AT5G65180.1 (ENTH/VHS family protein )

HSP 1 Score: 104.0 bits (258), Expect = 5.1e-22
Identity = 103/342 (30.12%), Postives = 166/342 (48.54%), Query Frame = 0


Query: 66  IGIWEERKVFGSRGQSLKEEIM----------GKHTETGNRNGKQ--VSAKLKQSASESL 125
           + IWEER+VFGSR +SLK+ ++           K    G+++ K+   S K K S+    
Sbjct: 109 VNIWEERRVFGSRSKSLKDVMLSEEAPPPLDVSKKRFRGSKSAKRDSKSTKTKLSSGGVS 168

Query: 126 DKIVSGYQVVFGSEVDEDVVLSRCSNSISYLEKLDKQI-GADVNSGQYHGTSIAEDLRGH 185
           +KIVS + +V     +E+  +++C +++  + K++K +  A   +      S+A++L   
Sbjct: 169 EKIVSAFNLVRAENSNEETEMNKCKSAVRRIRKMEKDVEDACSTAKDPRKESLAKELEEE 228

Query: 186 HTILRDCIEQLRAVETSRASLVSHLREALQEQEFKLERVRNQLQNLCPQFLNGENVQPMT 245
             ILR  +E+L++VE SR SLV+HLREAL+EQE +LE +++Q+Q    Q    +N+Q   
Sbjct: 229 ENILRQSVEKLKSVEESRTSLVNHLREALREQESELENLQSQIQVAQEQTEEAQNMQKRL 288

Query: 246 EGASKDAQSSIAPHGLVPREIEQSAPVMYAASLPFPAKPAPIEEDPRKSAAAAVAAKLTA 305
              +    ++    G       QSA +           PA I         AA+A  LT+
Sbjct: 289 NNET-PVNNNNGTSG-------QSAKI----------TPASI---------AAMAEMLTS 348

Query: 306 STSSVQMLSYVLSSLASEGVIGNPNKELSCDYPSEKRTKLENDQSPYVLPPSPQQPPVSS 365
           ST+S  ++  VLSS A+E               S       +D + +V+PP+PQQ  +  
Sbjct: 349 STNSSMIMHSVLSSFAAEAT-----------QTSGLTKSNTSDTNAFVVPPNPQQYHI-- 408

Query: 366 FPNPESLQRNASSTSQQYTPPPPSSSPPPIPPLPPVVQFTQN 395
            PNP + Q+           PP +  PPP   LPP +    N
Sbjct: 409 IPNPAASQQFPYGFGNIPLMPPGALPPPPPGTLPPHMMNNNN 410

[Close]

BLAST of Cp4.1LG01g26110 vs. TAIR 10
Match: AT5G10060.1 (ENTH/VHS family protein )

HSP 1 Score: 102.4 bits (254), Expect = 1.5e-21
Identity = 107/403 (26.55%), Postives = 179/403 (44.42%), Query Frame = 0


Query: 59  QKSIAVHIGIWEERKVFGSRGQSLKEEIMG----------KHTETGNRNGKQVSAKLKQS 118
           + ++A  I IWEER+VFGSR +SLK+ ++G          K    G+++ K+ S   +  
Sbjct: 102 KSAVARVIKIWEERRVFGSRSKSLKDVMLGEDVPLPLDISKKRPRGSKSSKRESKSSRTK 161

Query: 119 ASES---LDKIVSGYQVVFGSEVDEDVVLSRCSNSISYLEKLDKQIGADVNSGQYH--GT 178
            + S    +KI S Y +V     +E+  +++C +++  + K++K +    ++ + +    
Sbjct: 162 LASSGGVAEKIASAYHLVVAENSNEEAEMNKCKSAVKRIRKMEKDVEEACSTAKDNPKRK 221

Query: 179 SIAEDLRGHHTILRDCIEQLRAVETSRASLVSHLREALQEQEFKLERVRNQLQNLCPQFL 238
           S+A++L     +LR CIE+L++V+ SR+SLV+ L++AL+EQE +L+ ++ Q+Q    Q  
Sbjct: 222 SLAKELEEEEYLLRQCIEKLKSVQGSRSSLVNQLKDALREQESELDNLKAQIQVAKEQTE 281

Query: 239 NGENVQPMTEGASKDAQSSIAPHGLVPREIEQSAPVMYAASLPFPAKPAPIEEDPRKSAA 298
             +N+Q         ++ + A   +   E   +     A+                K   
Sbjct: 282 EAQNMQKRLNDEDYTSKQTTAATTIT--ETNDNTKSGQAS----------------KMTP 341

Query: 299 AAVAAKLTASTSSVQMLSYVLSSLASEGVIGNPNKELSCDYPSEKRTKLENDQSPYVLPP 358
           A++AA LTASTSS  ++  VLSS A+E               + K + L   +S      
Sbjct: 342 ASIAAMLTASTSSHMIMQSVLSSFAAE---------------ATKTSGLSKSESTV---- 401

Query: 359 SPQQPPVSSFPNPESLQRNASSTSQQY----TPPPPSSSPPPI----------------- 418
            P     +SFP+  + Q    +T  QY     PPPP    PP+                 
Sbjct: 402 -PVSDTNASFPSYNNSQNQTPTTQGQYHVIPNPPPPQFLKPPVMNNPYAFGNIPLMPPGL 461

Query: 419 PPLPPVVQFTQNVGSVSSMPFSYSMTQSLPPLAKPGYPNVGAP 426
           PP PP      N         S   +Q  P    PG    GAP
Sbjct: 462 PPPPPPPHLIGNQQPQIPQSNSAQQSQQGPTFQPPGIMYYGAP 466

[Close]

BLAST of Cp4.1LG01g26110 vs. TAIR 10
Match: AT5G65180.2 (ENTH/VHS family protein )

HSP 1 Score: 83.2 bits (204), Expect = 9.3e-16
Identity = 89/304 (29.28%), Postives = 146/304 (48.03%), Query Frame = 0


Query: 94  GNRNGKQ--VSAKLKQSASESLDKIVSGYQVVFGSEVDEDVVLSRCSNSISYLEKLDKQI 153
           G+++ K+   S K K S+    +KIVS + +V     +E+  +++C +++  + K++K +
Sbjct: 19  GSKSAKRDSKSTKTKLSSGGVSEKIVSAFNLVRAENSNEETEMNKCKSAVRRIRKMEKDV 78

Query: 154 -GADVNSGQYHGTSIAEDLRGHHTILRDCIEQLRAVETSRASLVSHLREALQEQEFKLER 213
             A   +      S+A++L     ILR  +E+L++VE SR SLV+HLREAL+EQE +LE 
Sbjct: 79  EDACSTAKDPRKESLAKELEEEENILRQSVEKLKSVEESRTSLVNHLREALREQESELEN 138

Query: 214 VRNQLQNLCPQFLNGENVQPMTEGASKDAQSSIAPHGLVPREIEQSAPVMYAASLPFPAK 273
           +++Q+Q    Q    +N+Q      +    ++    G       QSA +           
Sbjct: 139 LQSQIQVAQEQTEEAQNMQKRLNNET-PVNNNNGTSG-------QSAKI----------T 198

Query: 274 PAPIEEDPRKSAAAAVAAKLTASTSSVQMLSYVLSSLASEGVIGNPNKELSCDYPSEKRT 333
           PA I         AA+A  LT+ST+S  ++  VLSS A+E               S    
Sbjct: 199 PASI---------AAMAEMLTSSTNSSMIMHSVLSSFAAEAT-----------QTSGLTK 258

Query: 334 KLENDQSPYVLPPSPQQPPVSSFPNPESLQRNASSTSQQYTPPPPSSSPPPIPPLPPVVQ 393
              +D + +V+PP+PQQ  +   PNP + Q+           PP +  PPP   LPP + 
Sbjct: 259 SNTSDTNAFVVPPNPQQYHI--IPNPAASQQFPYGFGNIPLMPPGALPPPPPGTLPPHMM 282

Query: 394 FTQN 395
              N
Sbjct: 319 NNNN 282

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g26110 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g26110 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6602704.1	3.65e-256	94.57	Regulation of nuclear pre-mRNA domain-containing protein 1B, partial [Cucurbita ...	[more]
KAG7033391.1	5.17e-256	94.32	Regulation of nuclear pre-mRNA domain-containing protein 1B [Cucurbita argyrospe...	[more]
XP_022922040.1	2.09e-255	93.83	regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucurbita mosc...	[more]
XP_022989894.1	5.97e-255	93.33	UPF0400 protein C337.03-like [Cucurbita maxima] >XP_022989895.1 UPF0400 protein ...	[more]
XP_023517949.1	9.77e-254	94.32	regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucurbita pepo...	[more]

BLAST of Cp4.1LG01g26110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E332	1.01e-255	93.83	regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Cucurbita mo...	[more]
A0A6J1JNM2	2.89e-255	93.33	UPF0400 protein C337.03-like OS=Cucurbita maxima OX=3661 GN=LOC111486946 PE=4 SV...	[more]
A0A5D3C5Q5	2.02e-222	82.21	UPF0400 protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3B3N2	6.85e-222	82.21	UPF0400 protein C337.03 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485437 PE=4 ...	[more]
A0A6J1DG44	2.08e-220	82.13	UPF0400 protein C337.03 OS=Momordica charantia OX=3673 GN=LOC111020199 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g26110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G26990.1	4.4e-74	43.81	ENTH/VHS family protein	[more]
AT5G65180.1	5.1e-22	30.12	ENTH/VHS family protein	[more]
AT5G10060.1	1.5e-21	26.55	ENTH/VHS family protein	[more]
AT5G65180.2	9.3e-16	29.28	ENTH/VHS family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 194..218
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 413..434 score: 31.82 coord: 372..384 score: 52.31 coord: 342..358 score: 32.94 coord: 582..607 score: 25.38 coord: 618..630 score: 46.15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 372..388
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 616..632
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 353..371
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 574..634
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 330..390
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 597..615
None	No IPR available	PANTHER	PTHR12460	CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN	coord: 53..460 coord: 469..704
None	No IPR available	PANTHER	PTHR12460:SF23	OS01G0925000 PROTEIN	coord: 53..460 coord: 469..704

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g26110.1	Cp4.1LG01g26110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031124	mRNA 3'-end processing
cellular_component	GO:0016591	RNA polymerase II, holoenzyme
molecular_function	GO:0000993	RNA polymerase II complex binding