Cp4.1LG01g23960 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g23960
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Actin-depolymerizing factor
Location	Cp4.1LG01: 19320234 .. 19323557 (+)
RNA-Seq Expression	Cp4.1LG01g23960
Synteny	Cp4.1LG01g23960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGGTTTTTTAGCCGTCTGGGTGATATTATCAATCGCCCCCACCCCAGGGTGAATGGCTTCCACAATTATTATTATTTTATAATTTATAATATATATTAGTTATTTTTTTAATATTAGCAGTCGAATCTCTTAGGCCTTCCGCGGTACAGCCCTCGTTTCCCATCCCATCGTCTTCCTCTCTTCACTCACGCTTCTATCTTCTTTATCGTCTCGTCTGTGGAAGCCCTAAATTTTCTCAACTTTTCTCGCCCTTTCTTTCGCTTTCTCGGAAAAATGGTGAGCTTTTCCTCTTCTTTTCCCTTTTCGATTCATTTATCTGGCTTAGTTTTGTTGATTATTGTTCTTTTTTTGCCATTACTTAATTTGTTTGTTTATTTTTCTCTTCTATGGTTTTCTATTCGATCCTTGGAGTTCTTGGCTGTTTTGAAACGGAATCCTTGTAAATCGCTGCATCGATTGATTTGTTGTTCATTTTGGTCCGCTTGTTTAGTGTTTCAATGGCCTTAGATTGTTGATTATATTGAATACCATGCATTGTTAGCGAGTGGCTAAAAGCATTGGCCACCGTTGATGTAAATCGACTTAGTACATTCTCGTACATTGATCCCTGTTTTCACTGGGACCTTGTGTTGTGACTTCACTTTAAATCCTTTAGTTTATTATTATTTTTAATATTTTCCCCTGCCCGTTAATGATGATAATTATGAGATGTTTGCTTCATCTCAGTGGTTTAAACATTGGTATTTTTGTTGATGGATATAATTCTTATATTGAGATATTTTGCATTGTGTTACCTGAAAGTGTATGATGATTTATCACAAATTTATATAATTTGGAAACCTTCTATTGACGAAGTTGGAAAAGAAGACTGAAGGGTGTTGGATTGGAAAGGAAAACATCTATTTAACTATTTAAATATAGGTTTATCATCATCGGTCCATCTCATTTTGGTATGGTCATTGTCAAAACTCCTTCATGAATCTAAGTTATTTCACTTTGGGATAGTCCATGAGTCGCCCTCTTCTCCCTCATGTTGTTCATCCTTTGTGATTTTCCTTTTATTTCTTAGTTTGCTTCTCCCTTATCACCATCACCATTAGCGTGTGTTTGTTAGGAAATGGGGATAGGACGCTTGTTGGCATAGACTATAGAGCTAAGCATCATATTTGAAGGTGTGATTTGTTTCGGAGTTAAAACTTGTGGCTCTAGAGTTTCAGGGAGGAGCTGGTTAAAATTGTTCTCCTAAACACTCGAGACTAGGGTCACTGTTGGGTACAATGGCAATAAGAAATGAGTATTGAGAAAAGGTCAGAGGATTAAATCCCCCCTGCATTCCATCTCAAAGTTAGGTTTTCTCTCTCCCTACTCCTATCATACTGTAATAAAGTTAGGTTTCTTACAAAAGAATAAAATAAGGAAAAAAAGAGTCGGGAGTTTTACCAAAGGGCTGTTCATACTGTAATAGAACTTCTATAAAAAAGAAACTAGGATCAGATCCCTCTTGCAGGTGCATTGTTATATGAACTTGATTTCTGGGGGCTCTGTTCGTTCAGATGATTTTCATGTGAGTGTTTATTAGAATAACATGATATTAACAACAATGATGAAGACTCCTTGGTAGGGGAAACTCGAGTGGAAGTTAATTGTGAGCTAACCAAAAAACTAGCTCAAAAGTTTGATCCCCAAGCCTACGTGTTGGTAGGGGATTCCCCAAACACTTTGGTGAGAGATTGATGTTTAGTGTTATGCCCTATTCCCCACAGAATGGCGAAGTGAAAAGGATTAGCTGAAAAGATCCTCAAAGAAGAAATCAATTGATGACAAGGACTGGTGTATCATGAAGAGTAGGGGAATGATTTGAAGTCTAGGCCTCCAGAGCCCCTTACATTCCATCTCAAAGTTCTCATGGGACATCTGTAGACCTTATAAGTCAACTTTGGCCCGCATTGTTTTTCCTTGAAAAAAAAAATGGATATGCCTATCATCAAATAAAAAGCTTATTCAATTATGAAAAGGATGTTTTATATAGTTAACTTCCGCAGGAAATAAAGATTTATTATGTACAGATAAAACTTCATCTTATTAACTCATGCGAAGATTGAAAAATATAGATTAGACTTATTAGACTTCTGAAAATTTCACCAACGAAAAAGATTATTTCTAGGGGGCTAGTTTGGATGCATATTTCTCTCTATGGAAATCTGAGGCAGATTCTTCGTTTAAAGAACTGAAAGCTTGGAAAACATTGAGTGACTTTGGGTCTTTAAAGCCGTTGGTGATAGTATCCTAATGGATGTTCATTAGGGTTTCTGAAGAAAATAGGACTTCATAATTTACATTTCTAAATCAATTTATCACAGGCAAATGCAGCATCAGGGATGGCTGTGCATGATGATTGCAAGCTTAGGTTTCTGGATTTGAAGGCAAAAAGAACCTACCGTTTTATAGTTTTCAAGATTGAGGAAAAGCAGAAGCAAGTCGTGGTGGAAAAGCTTGGCAAGCCATCTCAAAGTTATGAGGACTTTGCTGCCAGCCTACCTGCAGATGAATGCCGATACGCGGTCTATGATTTCGATTTTGTGACTGAAGAGAATTGCCAGAAGAGCAGGATTATATTCATTGCCTGGTAAATTTACTACAAACGATTCCTCACTCATTTTATGAATCTGCATTCTAACTCATCATCTACCAACTGCGATGTTTGAAGGTCTCCTGATACATCAAGGGTGAGAAGCAAGATGATATACGCAAGCTCCAAGGACAGGTTCAAGAGGGAGTTGGACGGCATTCAAGTGGAGCTACAAGCAACTGATCCTACTGAGATGGGGCTTGATGTTATCAGAAGTCGGTCTGGCTTGTAGGAGGATTTGGCCGGCGAGTCATTGTGATGCAGAGCTGATGTTAATTACGTAAAATGTTCATAGATTGTGGGCTCGAAACTTGCTTTTATGCTATATGATATTGGCTTGTTCTTGAAAAGTTTCACCTAAGAGTTGTAAGGATGACTGGTTTTTTTGGCTTTCGTGGATTTAGTTGGTTGGATATTTTAAATGTGGCTGTGGGGTTATACCGCCGATTACTTATGCAGGGTAAATATGGATCAATGCCCGTTTGAGTATGTGAGTTTGGTTTTATGAAGAGAACCACTAGGAATAATTTGAGCAATCATTTTCGAGTTTCATGTGTTCCATATTTTCTTATCCAAATCATTTCATGATTTCGTGTCATGACTTGCTATATCCTTGTGTAGGCATACGTTTTCTGTGGATCTCTTCCAGTTCATGAATTTAAGGGTGGGATGCTTATTTCAATGGGTTTC

mRNA sequence

ATGTTCGTCGAATCTCTTAGGCCTTCCGCGGCAAATGCAGCATCAGGGATGGCTGTGCATGATGATTGCAAGCTTAGGTTTCTGGATTTGAAGGCAAAAAGAACCTACCGTTTTATAGTTTTCAAGATTGAGGAAAAGCAGAAGCAAGTCGTGGTGGAAAAGCTTGGCAAGCCATCTCAAAGTTATGAGGACTTTGCTGCCAGCCTACCTGCAGATGAATGCCGATACGCGGTCTATGATTTCGATTTTGTGACTGAAGAGAATTGCCAGAAGAGCAGGATTATATTCATTGCCTGGTCTCCTGATACATCAAGGGTGAGAAGCAAGATGATATACGCAAGCTCCAAGGACAGGTTCAAGAGGGAGTTGGACGGCATTCAAGTGGAGCTACAAGCAACTGATCCTACTGAGATGGGGCTTGATGTTATCAGAAGTCGGTCTGGCTTGTAGGAGGATTTGGCCGGCGAGTCATTGTGATGCAGAGCTGATGTTAATTACGTAAAATGTTCATAGATTGTGGGCTCGAAACTTGCTTTTATGCTATATGATATTGGCTTGTTCTTGAAAAGTTTCACCTAAGAGTTGTAAGGATGACTGGTTTTTTTGGCTTTCGTGGATTTAGTTGGTTGGATATTTTAAATGTGGCTGTGGGGTTATACCGCCGATTACTTATGCAGGGTAAATATGGATCAATGCCCGTTTGAGTATGTGAGTTTGGTTTTATGAAGAGAACCACTAGGAATAATTTGAGCAATCATTTTCGAGTTTCATGTGTTCCATATTTTCTTATCCAAATCATTTCATGATTTCGTGTCATGACTTGCTATATCCTTGTGTAGGCATACGTTTTCTGTGGATCTCTTCCAGTTCATGAATTTAAGGGTGGGATGCTTATTTCAATGGGTTTC

Coding sequence (CDS)

ATGTTCGTCGAATCTCTTAGGCCTTCCGCGGCAAATGCAGCATCAGGGATGGCTGTGCATGATGATTGCAAGCTTAGGTTTCTGGATTTGAAGGCAAAAAGAACCTACCGTTTTATAGTTTTCAAGATTGAGGAAAAGCAGAAGCAAGTCGTGGTGGAAAAGCTTGGCAAGCCATCTCAAAGTTATGAGGACTTTGCTGCCAGCCTACCTGCAGATGAATGCCGATACGCGGTCTATGATTTCGATTTTGTGACTGAAGAGAATTGCCAGAAGAGCAGGATTATATTCATTGCCTGGTCTCCTGATACATCAAGGGTGAGAAGCAAGATGATATACGCAAGCTCCAAGGACAGGTTCAAGAGGGAGTTGGACGGCATTCAAGTGGAGCTACAAGCAACTGATCCTACTGAGATGGGGCTTGATGTTATCAGAAGTCGGTCTGGCTTGTAG

Protein sequence

MFVESLRPSAANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGKPSQSYEDFAASLPADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVIRSRSGL

Homology

[Close]

BLAST of Cp4.1LG01g23960 vs. ExPASy Swiss-Prot
Match: Q9FVI1 (Actin-depolymerizing factor 2 OS=Petunia hybrida OX=4102 GN=ADF2 PE=2 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.3e-65
Identity = 121/138 (87.68%), Postives = 133/138 (96.38%), Query Frame = 0


Query: 11  ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGKPSQSYEDFAASLP 70
           ANAASGMAVHDDCKL+FL+LKAKRTYRFI++KIEEKQK+VVVEKLG+P++SYEDF A LP
Sbjct: 2   ANAASGMAVHDDCKLKFLELKAKRTYRFIIYKIEEKQKEVVVEKLGEPTESYEDFTAGLP 61

Query: 71  ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVEL 130
           ADECRYAVYDFDF+T+EN QKSRI FIAWSPDT+RVRSKMIYASSKDRFKRELDGIQVEL
Sbjct: 62  ADECRYAVYDFDFMTKENHQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVEL 121

Query: 131 QATDPTEMGLDVIRSRSG 149
           QATDPTEMGLDV RSR+G
Sbjct: 122 QATDPTEMGLDVFRSRAG 139

[Close]

BLAST of Cp4.1LG01g23960 vs. ExPASy Swiss-Prot
Match: Q9FVI2 (Actin-depolymerizing factor 1 OS=Petunia hybrida OX=4102 GN=ADF1 PE=2 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 6.5e-65
Identity = 121/137 (88.32%), Postives = 132/137 (96.35%), Query Frame = 0


Query: 11  ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGKPSQSYEDFAASLP 70
           ANAASGMAVHDDCKLRFL+LKAKRT+RFIV+KIEEKQKQVVVEK+G+P++SYEDFAASLP
Sbjct: 2   ANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKIGEPTESYEDFAASLP 61

Query: 71  ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVEL 130
            +ECRYAVYDFDFVT ENCQKSRI FIAW PDT+RVRSKMIYASSKDRFKRELDGIQVEL
Sbjct: 62  ENECRYAVYDFDFVTAENCQKSRIFFIAWCPDTARVRSKMIYASSKDRFKRELDGIQVEL 121

Query: 131 QATDPTEMGLDVIRSRS 148
           QA DPTEMGLDVI+SR+
Sbjct: 122 QACDPTEMGLDVIQSRA 138

[Close]

BLAST of Cp4.1LG01g23960 vs. ExPASy Swiss-Prot
Match: Q39250 (Actin-depolymerizing factor 1 OS=Arabidopsis thaliana OX=3702 GN=ADF1 PE=1 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 6.1e-63
Identity = 117/137 (85.40%), Postives = 129/137 (94.16%), Query Frame = 0


Query: 11  ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGKPSQSYEDFAASLP 70
           ANAASGMAVHDDCKLRFL+LKAKRT+RFIV+KIEEKQKQVVVEK+G+P Q+YE+FAA LP
Sbjct: 2   ANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLP 61

Query: 71  ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVEL 130
           ADECRYA+YDFDFVT ENCQKS+I FIAW PD ++VRSKMIYASSKDRFKRELDGIQVEL
Sbjct: 62  ADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVEL 121

Query: 131 QATDPTEMGLDVIRSRS 148
           QATDPTEM LDV RSR+
Sbjct: 122 QATDPTEMDLDVFRSRA 138

[Close]

BLAST of Cp4.1LG01g23960 vs. ExPASy Swiss-Prot
Match: Q9ZSK3 (Actin-depolymerizing factor 4 OS=Arabidopsis thaliana OX=3702 GN=ADF4 PE=1 SV=2)

HSP 1 Score: 241.5 bits (615), Expect = 6.1e-63
Identity = 116/136 (85.29%), Postives = 129/136 (94.85%), Query Frame = 0


Query: 11  ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGKPSQSYEDFAASLP 70
           ANAASGMAVHDDCKLRFL+LKAKRT+RFIV+KIEEKQKQV+VEK+G+P  +YEDFAASLP
Sbjct: 2   ANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLP 61

Query: 71  ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVEL 130
           ADECRYA+YDFDFVT ENCQKS+I FIAW PD ++VRSKMIYASSKDRFKRELDGIQVEL
Sbjct: 62  ADECRYAIYDFDFVTAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVEL 121

Query: 131 QATDPTEMGLDVIRSR 147
           QATDPTEM LDV++SR
Sbjct: 122 QATDPTEMDLDVLKSR 137

[Close]

BLAST of Cp4.1LG01g23960 vs. ExPASy Swiss-Prot
Match: Q0DLA3 (Actin-depolymerizing factor 7 OS=Oryza sativa subsp. japonica OX=39947 GN=ADF7 PE=3 SV=2)

HSP 1 Score: 237.3 bits (604), Expect = 1.1e-61
Identity = 113/137 (82.48%), Postives = 131/137 (95.62%), Query Frame = 0


Query: 11  ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGKPSQSYEDFAASLP 70
           ANAASGMAV D+CKL+FL+LKAKRTYRFI++KI+EK+K VVVEK+G+P  +Y+DFAASLP
Sbjct: 2   ANAASGMAVDDECKLKFLELKAKRTYRFIIYKIDEKKKMVVVEKVGEPVLNYDDFAASLP 61

Query: 71  ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVEL 130
           A+ECRYA++D+DFVTEENCQKS+I FIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVEL
Sbjct: 62  ANECRYAIFDYDFVTEENCQKSKIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVEL 121

Query: 131 QATDPTEMGLDVIRSRS 148
           QATDPTE+GLDVIR R+
Sbjct: 122 QATDPTEVGLDVIRGRA 138

[Close]

BLAST of Cp4.1LG01g23960 vs. NCBI nr
Match: XP_023534804.1 (actin-depolymerizing factor 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 276 bits (706), Expect = 2.52e-93
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 11  ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGKPSQSYEDFAASLP 70
           ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGKPSQSYEDFAASLP
Sbjct: 2   ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGKPSQSYEDFAASLP 61

Query: 71  ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVEL 130
           ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVEL
Sbjct: 62  ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVEL 121

Query: 131 QATDPTEMGLDVIRSRSGL 149
           QATDPTEMGLDVIRSRSGL
Sbjct: 122 QATDPTEMGLDVIRSRSGL 140

[Close]

BLAST of Cp4.1LG01g23960 vs. NCBI nr
Match: XP_022922159.1 (actin-depolymerizing factor 2 [Cucurbita moschata] >XP_022990483.1 actin-depolymerizing factor 2 [Cucurbita maxima] >KAG6602360.1 Actin-depolymerizing factor 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033039.1 Actin-depolymerizing factor 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 275 bits (702), Expect = 1.03e-92
Identity = 138/139 (99.28%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 11  ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGKPSQSYEDFAASLP 70
           ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLG+PSQSYEDFAASLP
Sbjct: 2   ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGEPSQSYEDFAASLP 61

Query: 71  ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVEL 130
           ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVEL
Sbjct: 62  ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVEL 121

Query: 131 QATDPTEMGLDVIRSRSGL 149
           QATDPTEMGLDVIRSRSGL
Sbjct: 122 QATDPTEMGLDVIRSRSGL 140

[Close]

BLAST of Cp4.1LG01g23960 vs. NCBI nr
Match: XP_004142738.1 (actin-depolymerizing factor 2 isoform X1 [Cucumis sativus] >XP_011655353.1 actin-depolymerizing factor 2 isoform X2 [Cucumis sativus] >KGN51280.1 hypothetical protein Csa_009315 [Cucumis sativus])

HSP 1 Score: 271 bits (692), Expect = 3.32e-91
Identity = 135/138 (97.83%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 11  ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGKPSQSYEDFAASLP 70
           ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGKPS+SYEDF ASLP
Sbjct: 2   ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGKPSESYEDFTASLP 61

Query: 71  ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVEL 130
           ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTS+VRSKMIYASSKDRFKRELDGIQVEL
Sbjct: 62  ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVEL 121

Query: 131 QATDPTEMGLDVIRSRSG 148
           QATDPTEMGLDVIRSRSG
Sbjct: 122 QATDPTEMGLDVIRSRSG 139

[Close]

BLAST of Cp4.1LG01g23960 vs. NCBI nr
Match: XP_008463478.1 (PREDICTED: actin-depolymerizing factor 2 isoform X1 [Cucumis melo] >XP_008463479.1 PREDICTED: actin-depolymerizing factor 2 isoform X2 [Cucumis melo])

HSP 1 Score: 269 bits (688), Expect = 1.35e-90
Identity = 134/138 (97.10%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 11  ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGKPSQSYEDFAASLP 70
           ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLG+PS+SYEDF ASLP
Sbjct: 2   ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGEPSESYEDFTASLP 61

Query: 71  ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVEL 130
           ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTS+VRSKMIYASSKDRFKRELDGIQVEL
Sbjct: 62  ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVEL 121

Query: 131 QATDPTEMGLDVIRSRSG 148
           QATDPTEMGLDVIRSRSG
Sbjct: 122 QATDPTEMGLDVIRSRSG 139

[Close]

BLAST of Cp4.1LG01g23960 vs. NCBI nr
Match: XP_038891099.1 (actin-depolymerizing factor 2 [Benincasa hispida])

HSP 1 Score: 269 bits (687), Expect = 1.92e-90
Identity = 134/138 (97.10%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 11  ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGKPSQSYEDFAASLP 70
           ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLG+PSQSYEDF ASLP
Sbjct: 2   ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGEPSQSYEDFTASLP 61

Query: 71  ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVEL 130
           ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTS+VRSKMIYASSKDRFKRELDGIQVEL
Sbjct: 62  ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVEL 121

Query: 131 QATDPTEMGLDVIRSRSG 148
           QATDP+EMGLDVIRSRSG
Sbjct: 122 QATDPSEMGLDVIRSRSG 139

[Close]

BLAST of Cp4.1LG01g23960 vs. ExPASy TrEMBL
Match: A0A6J1JTE7 (actin-depolymerizing factor 2 OS=Cucurbita maxima OX=3661 GN=LOC111487332 PE=3 SV=1)

HSP 1 Score: 275 bits (702), Expect = 4.96e-93
Identity = 138/139 (99.28%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 11  ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGKPSQSYEDFAASLP 70
           ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLG+PSQSYEDFAASLP
Sbjct: 2   ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGEPSQSYEDFAASLP 61

Query: 71  ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVEL 130
           ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVEL
Sbjct: 62  ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVEL 121

Query: 131 QATDPTEMGLDVIRSRSGL 149
           QATDPTEMGLDVIRSRSGL
Sbjct: 122 QATDPTEMGLDVIRSRSGL 140

[Close]

BLAST of Cp4.1LG01g23960 vs. ExPASy TrEMBL
Match: A0A6J1E2L4 (actin-depolymerizing factor 2 OS=Cucurbita moschata OX=3662 GN=LOC111430219 PE=3 SV=1)

HSP 1 Score: 275 bits (702), Expect = 4.96e-93
Identity = 138/139 (99.28%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 11  ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGKPSQSYEDFAASLP 70
           ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLG+PSQSYEDFAASLP
Sbjct: 2   ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGEPSQSYEDFAASLP 61

Query: 71  ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVEL 130
           ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVEL
Sbjct: 62  ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVEL 121

Query: 131 QATDPTEMGLDVIRSRSGL 149
           QATDPTEMGLDVIRSRSGL
Sbjct: 122 QATDPTEMGLDVIRSRSGL 140

[Close]

BLAST of Cp4.1LG01g23960 vs. ExPASy TrEMBL
Match: A0A0A0KNQ1 (ADF-H domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G512870 PE=3 SV=1)

HSP 1 Score: 271 bits (692), Expect = 1.61e-91
Identity = 135/138 (97.83%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 11  ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGKPSQSYEDFAASLP 70
           ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGKPS+SYEDF ASLP
Sbjct: 2   ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGKPSESYEDFTASLP 61

Query: 71  ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVEL 130
           ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTS+VRSKMIYASSKDRFKRELDGIQVEL
Sbjct: 62  ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVEL 121

Query: 131 QATDPTEMGLDVIRSRSG 148
           QATDPTEMGLDVIRSRSG
Sbjct: 122 QATDPTEMGLDVIRSRSG 139

[Close]

BLAST of Cp4.1LG01g23960 vs. ExPASy TrEMBL
Match: A0A1S3CJB1 (actin-depolymerizing factor 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501640 PE=3 SV=1)

HSP 1 Score: 269 bits (688), Expect = 6.55e-91
Identity = 134/138 (97.10%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 11  ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGKPSQSYEDFAASLP 70
           ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLG+PS+SYEDF ASLP
Sbjct: 2   ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGEPSESYEDFTASLP 61

Query: 71  ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVEL 130
           ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTS+VRSKMIYASSKDRFKRELDGIQVEL
Sbjct: 62  ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVEL 121

Query: 131 QATDPTEMGLDVIRSRSG 148
           QATDPTEMGLDVIRSRSG
Sbjct: 122 QATDPTEMGLDVIRSRSG 139

[Close]

BLAST of Cp4.1LG01g23960 vs. ExPASy TrEMBL
Match: A0A6J1K1F6 (actin-depolymerizing factor 2-like OS=Cucurbita maxima OX=3661 GN=LOC111489270 PE=3 SV=1)

HSP 1 Score: 268 bits (684), Expect = 2.85e-90
Identity = 134/138 (97.10%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 11  ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGKPSQSYEDFAASLP 70
           ANAASGMAVHDDCKLRFLDLKAKRT+RFIVFKIEEK KQVVVEKLG+PSQSYEDFAASLP
Sbjct: 2   ANAASGMAVHDDCKLRFLDLKAKRTFRFIVFKIEEKLKQVVVEKLGEPSQSYEDFAASLP 61

Query: 71  ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVEL 130
           ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTS+VRSKMIYASSKDRFKRELDGIQVEL
Sbjct: 62  ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVEL 121

Query: 131 QATDPTEMGLDVIRSRSG 148
           QATDPTEMGLDVIRSRSG
Sbjct: 122 QATDPTEMGLDVIRSRSG 139

[Close]

BLAST of Cp4.1LG01g23960 vs. TAIR 10
Match: AT3G46010.2 (actin depolymerizing factor 1 )

HSP 1 Score: 241.9 bits (616), Expect = 3.3e-64
Identity = 117/138 (84.78%), Postives = 130/138 (94.20%), Query Frame = 0


Query: 10  AANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGKPSQSYEDFAASL 69
           +ANAASGMAVHDDCKLRFL+LKAKRT+RFIV+KIEEKQKQVVVEK+G+P Q+YE+FAA L
Sbjct: 12  SANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACL 71

Query: 70  PADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVE 129
           PADECRYA+YDFDFVT ENCQKS+I FIAW PD ++VRSKMIYASSKDRFKRELDGIQVE
Sbjct: 72  PADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVE 131

Query: 130 LQATDPTEMGLDVIRSRS 148
           LQATDPTEM LDV RSR+
Sbjct: 132 LQATDPTEMDLDVFRSRA 149

[Close]

BLAST of Cp4.1LG01g23960 vs. TAIR 10
Match: AT3G46010.1 (actin depolymerizing factor 1 )

HSP 1 Score: 241.5 bits (615), Expect = 4.3e-64
Identity = 117/137 (85.40%), Postives = 129/137 (94.16%), Query Frame = 0


Query: 11  ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGKPSQSYEDFAASLP 70
           ANAASGMAVHDDCKLRFL+LKAKRT+RFIV+KIEEKQKQVVVEK+G+P Q+YE+FAA LP
Sbjct: 2   ANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLP 61

Query: 71  ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVEL 130
           ADECRYA+YDFDFVT ENCQKS+I FIAW PD ++VRSKMIYASSKDRFKRELDGIQVEL
Sbjct: 62  ADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVEL 121

Query: 131 QATDPTEMGLDVIRSRS 148
           QATDPTEM LDV RSR+
Sbjct: 122 QATDPTEMDLDVFRSRA 138

[Close]

BLAST of Cp4.1LG01g23960 vs. TAIR 10
Match: AT5G59890.1 (actin depolymerizing factor 4 )

HSP 1 Score: 241.5 bits (615), Expect = 4.3e-64
Identity = 116/136 (85.29%), Postives = 129/136 (94.85%), Query Frame = 0


Query: 11  ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGKPSQSYEDFAASLP 70
           ANAASGMAVHDDCKLRFL+LKAKRT+RFIV+KIEEKQKQV+VEK+G+P  +YEDFAASLP
Sbjct: 2   ANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLP 61

Query: 71  ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVEL 130
           ADECRYA+YDFDFVT ENCQKS+I FIAW PD ++VRSKMIYASSKDRFKRELDGIQVEL
Sbjct: 62  ADECRYAIYDFDFVTAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVEL 121

Query: 131 QATDPTEMGLDVIRSR 147
           QATDPTEM LDV++SR
Sbjct: 122 QATDPTEMDLDVLKSR 137

[Close]

BLAST of Cp4.1LG01g23960 vs. TAIR 10
Match: AT3G46000.1 (actin depolymerizing factor 2 )

HSP 1 Score: 233.8 bits (595), Expect = 9.0e-62
Identity = 112/137 (81.75%), Postives = 128/137 (93.43%), Query Frame = 0


Query: 11  ANAASGMAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGKPSQSYEDFAASLP 70
           ANAASGMAVHDDCKL+F++LKAKRT+R IV+KIE+  KQV+VEKLG+P QSY+DFAASLP
Sbjct: 2   ANAASGMAVHDDCKLKFMELKAKRTFRTIVYKIED--KQVIVEKLGEPEQSYDDFAASLP 61

Query: 71  ADECRYAVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVEL 130
           AD+CRY +YDFDFVT ENCQKS+I FIAWSPDT++VR KMIYASSKDRFKRELDGIQVEL
Sbjct: 62  ADDCRYCIYDFDFVTAENCQKSKIFFIAWSPDTAKVRDKMIYASSKDRFKRELDGIQVEL 121

Query: 131 QATDPTEMGLDVIRSRS 148
           QATDPTEMGLDV +SR+
Sbjct: 122 QATDPTEMGLDVFKSRT 136

[Close]

BLAST of Cp4.1LG01g23960 vs. TAIR 10
Match: AT5G59890.2 (actin depolymerizing factor 4 )

HSP 1 Score: 230.7 bits (587), Expect = 7.6e-61
Identity = 110/130 (84.62%), Postives = 123/130 (94.62%), Query Frame = 0


Query: 17  MAVHDDCKLRFLDLKAKRTYRFIVFKIEEKQKQVVVEKLGKPSQSYEDFAASLPADECRY 76
           MAVHDDCKLRFL+LKAKRT+RFIV+KIEEKQKQV+VEK+G+P  +YEDFAASLPADECRY
Sbjct: 1   MAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLPADECRY 60

Query: 77  AVYDFDFVTEENCQKSRIIFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVELQATDPT 136
           A+YDFDFVT ENCQKS+I FIAW PD ++VRSKMIYASSKDRFKRELDGIQVELQATDPT
Sbjct: 61  AIYDFDFVTAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVELQATDPT 120

Query: 137 EMGLDVIRSR 147
           EM LDV++SR
Sbjct: 121 EMDLDVLKSR 130

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g23960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FVI1	1.3e-65	87.68	Actin-depolymerizing factor 2 OS=Petunia hybrida OX=4102 GN=ADF2 PE=2 SV=1	[more]
Q9FVI2	6.5e-65	88.32	Actin-depolymerizing factor 1 OS=Petunia hybrida OX=4102 GN=ADF1 PE=2 SV=1	[more]
Q39250	6.1e-63	85.40	Actin-depolymerizing factor 1 OS=Arabidopsis thaliana OX=3702 GN=ADF1 PE=1 SV=1	[more]
Q9ZSK3	6.1e-63	85.29	Actin-depolymerizing factor 4 OS=Arabidopsis thaliana OX=3702 GN=ADF4 PE=1 SV=2	[more]
Q0DLA3	1.1e-61	82.48	Actin-depolymerizing factor 7 OS=Oryza sativa subsp. japonica OX=39947 GN=ADF7 P...	[more]

BLAST of Cp4.1LG01g23960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023534804.1	2.52e-93	100.00	actin-depolymerizing factor 2 [Cucurbita pepo subsp. pepo]	[more]
XP_022922159.1	1.03e-92	99.28	actin-depolymerizing factor 2 [Cucurbita moschata] >XP_022990483.1 actin-depolym...	[more]
XP_004142738.1	3.32e-91	97.83	actin-depolymerizing factor 2 isoform X1 [Cucumis sativus] >XP_011655353.1 actin...	[more]
XP_008463478.1	1.35e-90	97.10	PREDICTED: actin-depolymerizing factor 2 isoform X1 [Cucumis melo] >XP_008463479...	[more]
XP_038891099.1	1.92e-90	97.10	actin-depolymerizing factor 2 [Benincasa hispida]	[more]

BLAST of Cp4.1LG01g23960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JTE7	4.96e-93	99.28	actin-depolymerizing factor 2 OS=Cucurbita maxima OX=3661 GN=LOC111487332 PE=3 S...	[more]
A0A6J1E2L4	4.96e-93	99.28	actin-depolymerizing factor 2 OS=Cucurbita moschata OX=3662 GN=LOC111430219 PE=3...	[more]
A0A0A0KNQ1	1.61e-91	97.83	ADF-H domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G512870 PE=3 ...	[more]
A0A1S3CJB1	6.55e-91	97.10	actin-depolymerizing factor 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501640...	[more]
A0A6J1K1F6	2.85e-90	97.10	actin-depolymerizing factor 2-like OS=Cucurbita maxima OX=3661 GN=LOC111489270 P...	[more]

BLAST of Cp4.1LG01g23960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46010.2	3.3e-64	84.78	actin depolymerizing factor 1	[more]
AT3G46010.1	4.3e-64	85.40	actin depolymerizing factor 1	[more]
AT5G59890.1	4.3e-64	85.29	actin depolymerizing factor 4	[more]
AT3G46000.1	9.0e-62	81.75	actin depolymerizing factor 2	[more]
AT5G59890.2	7.6e-61	84.62	actin depolymerizing factor 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002108	Actin-depolymerising factor homology domain	SMART	SM00102	adf_2	coord: 21..148 e-value: 6.4E-58 score: 208.4
IPR002108	Actin-depolymerising factor homology domain	PFAM	PF00241	Cofilin_ADF	coord: 23..145 e-value: 3.5E-37 score: 127.0
IPR002108	Actin-depolymerising factor homology domain	PROSITE	PS51263	ADF_H	coord: 14..148 score: 38.612473
IPR029006	ADF-H/Gelsolin-like domain superfamily	GENE3D	3.40.20.10	Severin	coord: 5..148 e-value: 5.3E-53 score: 181.1
None	No IPR available	PANTHER	PTHR11913:SF74	ACTIN-DEPOLYMERIZING FACTOR 2-LIKE	coord: 6..147
None	No IPR available	SUPERFAMILY	55753	Actin depolymerizing proteins	coord: 12..146
IPR017904	ADF/Cofilin	PANTHER	PTHR11913	COFILIN-RELATED	coord: 6..147
IPR017904	ADF/Cofilin	CDD	cd11286	ADF_cofilin_like	coord: 15..146 e-value: 2.00523E-66 score: 196.239

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g23960.1	Cp4.1LG01g23960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030042	actin filament depolymerization
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003779	actin binding