Cp4.1LG01g22610 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g22610
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	glutamic acid-rich protein isoform X1
Location	Cp4.1LG01: 20185040 .. 20187708 (+)
RNA-Seq Expression	Cp4.1LG01g22610
Synteny	Cp4.1LG01g22610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATCCATCATCGGCTTCAATATTACAAACCCTTCCTTTTTATGTGTGTTCTCGTTCGTATTTTCATTTGGTGTCTGGCTTGTTCTTACTGAATTGGACTTCTCTATTTCTCAATCTGAAAAAAATAAAATTAGGGTTTAGTGCAAAGCCCGCGATACTCAGAATGAGCAGCAAGCACGGTGCTCCGAAGCACCAAAACAAATACGCTTGGAAACCCAACGCCGGCCGCAAAATCAACGAAACGGAGGTTGGAGGCAGATTCCGCCCACTATCCGAGATCACTGGAGTTTGTCTTCGCTGCAAGGACCAAATTGATTGGAAACGCCGTTACGGCAAGTACAAACCCCTTTCTGAACCTGCTAAATGGTTCGTATTCCTTTTCATTTTCTTTCTTTCTTTCTTCTTTTTGTTAGTTTGTCTGTCTCTCTGAAGATGGGTTGCAAATTTTAGTTCTCAAATTGATTGAATGTATCGCAGTCAACTTTGTTCGAAGCGGGCTGTTCGTCAAGCGTATCATAATCTCTGTCCTGGTCAGTTTAATTATCAATATCTCACTTGTTTATGTGGGTTTAATTTGTTCTAAACAAATAATACTTCTAGGGGGAAATATGTCATTATGAACAGGAAGTTGCTCCACCCCTTGTTTATGTGTATCCTAAGTGTTCTACCTGGAACTGATGTTCATGTAGGTTGTGCCAAGCAGCAAGGTGTATGCGCAAAGTGTCGCTGTCGTGTAGACCAAACCATTGGAAGGTGTGTTTATATTCACTACTGAATGTTAATGCCTGAATCTTGTGCACAGAATCTATATTCAAATGTTGATGTCTTTAGCCAAGAAGTTTGTGAAATATTAAGGCCTTTCCATCTGCCCCTTTTGTAGGGATATTTCTGAAGTCGAGGCTGAGCAAAAGATGCTTCAAGAGGTATGATTTGGCACTCATTCGATGGTGATAAATTTTCAACTATAGCTTACAGATTTGGTGATTGCTGCAGGCCATAAAGAATGCTCGAGAAAGGGATAAAAGAACTCTATTACGTGCTGTAAGCTTCCTGTTCTTTTGATTTTGTTTAATTGCCTACAGAATGAATCCATGAAAGAGATTTGGTGAATCAAATAGATTTTTGGCACTTCAAGAACATTCGTCTAGTATTTCAGAATTGAGAGGAGGCTTATGTTTAGCTTTATCACCCCCTATTGTTTTCTGTTTGGGGAAGAGTCTTTTCTCAACCTTACCTACATCTGGCGCTCTTTTGTGTTCATGTGAGGACTCGATATAGAGCTAGTCGTAAATAAGGTTAAACTTAAAAGTTGAGTGAGTTGTTTTGGGTGTGAGGAAATTATTCAAGTAGTCTGCCACAACATAGTTGTCGAGAAATTGTAGAAATACTACTAATTTGTATTTAGTAGTGATTAGAGGCATTTACATCTTCAAACTTGTATTCAATTGATATTAGGGGTAGACACATTGTGGTGGCCTCATTAAATAATTTCCATGAGGTGGTCGTGACATTTTTTATGTTGGTTTGCCCTTCTTCGGTCGGTCATAGCCATAAAGTCTTGTCATTCTTGGAAATACTGGTTGGTATGTTGAAAAATGACACCGCCAACAGTAGGAATTCATTGTGAGGTTTTTTGGGCACCTCTAGGATTCCTTCGAAAGGAATCTCAAAGTGTTTTACCACTTGTTTGTTATGTATTCTGTTAATGGTGGCGCTCTATCCCACTTTAGTTCCTCGGTTTATATCTTCATTCTCATTAAGAATCCTTTTCCTCTGTTTGCTTTGTTGAGGGGTCATTCCTAAATGGAGGTTGCCCTATTTGATGTCTTGATCCTTTTAATGTTTTTCTTTGGTGGGTGTGGTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTCATTCATCTTAGTAAAGCTGGTTCTTTTTCATATAAAATTGAAGTAGCTTTGTAGCTAAGTATCACACTGTCATTTCTAGTGTGATTTTCTTCTGTCACATCCTTTGTTTTGTTTTCTGCAAAGAACATATCCCCATTCACGCATGCTGATGTACGTACGACCATCAATATAGATGCTTGTATATTTACAAGTACATAGCAATGGTTATGAAATTTCTACACCAGCTGCTAAATGAAATGCCCTTGTAGTGTGTTGGTTCCTCTGGTTTTTCCCCCTCTTCCTGCCTGATCCATATTTTAATTTATTTTATTGAAACAGATGGAAAAAGGCAAAAGTAAGACTTCAAATAAGAATAAATCTGCAGATGAAGAAAGTAAGACTGGGGATTCAATTCCTTCGTCAACAGAAGAGCAGGCTGCATTAGGCAGAACAGAGGAGGAGGATGACGACAATGAAAGTACTGATGACACAGATGAAGATGCTATTGAAGACGAAGATGAATGTGAAAATGAAGAGAAGGATAAAGATGAAAACGAGGAATAGTGCATTAATCTTGATTAGGGGTATGATTTTGGCATTAGTCGTTTGATGAACAATTTCTATTTGAAAGGCAATTTTGATGGGTCCTTTTGCTTTTAGGAGTGCGTTTGCTTGTACTATCAAGATCAACTATCGTTTTATAAAAATTTTGACAACACAGCCTGATAAGAATTTGAGATGTTGAGATTTGCAAAGTTATTTGAAAACTGAAAACGAGTTCTACAGGGGAACTTGAG

mRNA sequence

GATCCATCATCGGCTTCAATATTACAAACCCTTCCTTTTTATGTGTGTTCTCGTTCGTATTTTCATTTGGTGTCTGGCTTGTTCTTACTGAATTGGACTTCTCTATTTCTCAATCTGAAAAAAATAAAATTAGGGTTTAGTGCAAAGCCCGCGATACTCAGAATGAGCAGCAAGCACGGTGCTCCGAAGCACCAAAACAAATACGCTTGGAAACCCAACGCCGGCCGCAAAATCAACGAAACGGAGGTTGGAGGCAGATTCCGCCCACTATCCGAGATCACTGGAGTTTGTCTTCGCTGCAAGGACCAAATTGATTGGAAACGCCGTTACGGCAAGTACAAACCCCTTTCTGAACCTGCTAAATGTCAACTTTGTTCGAAGCGGGCTGTTCGTCAAGCGTATCATAATCTCTGTCCTGGTTGTGCCAAGCAGCAAGGTGTATGCGCAAAGTGTCGCTGTCGTGTAGACCAAACCATTGGAAGGGATATTTCTGAAGTCGAGGCTGAGCAAAAGATGCTTCAAGAGGCCATAAAGAATGCTCGAGAAAGGGATAAAAGAACTCTATTACGTGCTATGGAAAAAGGCAAAAGTAAGACTTCAAATAAGAATAAATCTGCAGATGAAGAAAGTAAGACTGGGGATTCAATTCCTTCGTCAACAGAAGAGCAGGCTGCATTAGGCAGAACAGAGGAGGAGGATGACGACAATGAAAGTACTGATGACACAGATGAAGATGCTATTGAAGACGAAGATGAATGTGAAAATGAAGAGAAGGATAAAGATGAAAACGAGGAATAGTGCATTAATCTTGATTAGGGGTATGATTTTGGCATTAGTCGTTTGATGAACAATTTCTATTTGAAAGGCAATTTTGATGGGTCCTTTTGCTTTTAGGAGTGCGTTTGCTTGTACTATCAAGATCAACTATCGTTTTATAAAAATTTTGACAACACAGCCTGATAAGAATTTGAGATGTTGAGATTTGCAAAGTTATTTGAAAACTGAAAACGAGTTCTACAGGGGAACTTGAG

Coding sequence (CDS)

ATGAGCAGCAAGCACGGTGCTCCGAAGCACCAAAACAAATACGCTTGGAAACCCAACGCCGGCCGCAAAATCAACGAAACGGAGGTTGGAGGCAGATTCCGCCCACTATCCGAGATCACTGGAGTTTGTCTTCGCTGCAAGGACCAAATTGATTGGAAACGCCGTTACGGCAAGTACAAACCCCTTTCTGAACCTGCTAAATGTCAACTTTGTTCGAAGCGGGCTGTTCGTCAAGCGTATCATAATCTCTGTCCTGGTTGTGCCAAGCAGCAAGGTGTATGCGCAAAGTGTCGCTGTCGTGTAGACCAAACCATTGGAAGGGATATTTCTGAAGTCGAGGCTGAGCAAAAGATGCTTCAAGAGGCCATAAAGAATGCTCGAGAAAGGGATAAAAGAACTCTATTACGTGCTATGGAAAAAGGCAAAAGTAAGACTTCAAATAAGAATAAATCTGCAGATGAAGAAAGTAAGACTGGGGATTCAATTCCTTCGTCAACAGAAGAGCAGGCTGCATTAGGCAGAACAGAGGAGGAGGATGACGACAATGAAAGTACTGATGACACAGATGAAGATGCTATTGAAGACGAAGATGAATGTGAAAATGAAGAGAAGGATAAAGATGAAAACGAGGAATAG

Protein sequence

MSSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYKPLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQEAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTEEEDDDNESTDDTDEDAIEDEDECENEEKDKDENEE

Homology

[Close]

BLAST of Cp4.1LG01g22610 vs. ExPASy Swiss-Prot
Match: Q96MD7 (Uncharacterized protein C9orf85 OS=Homo sapiens OX=9606 GN=C9orf85 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 9.6e-14
Identity = 36/98 (36.73%), Postives = 58/98 (59.18%), Query Frame = 0


Query: 9   KHQNKYAWKPNA-GRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYKPLSEPAK 68
           KHQN +++K +   + +   ++  +        GVC RCK+ ++W+ +Y KYKPLS+P K
Sbjct: 15  KHQNTFSFKNDKFDKSVQTKKINAKLH-----DGVCQRCKEVLEWRVKYSKYKPLSKPKK 74

Query: 69  CQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTI 106
           C  C ++ V+ +YH +C  CA +  VCAKC  + D  I
Sbjct: 75  CVKCLQKTVKDSYHIMCRPCACELEVCAKCGKKEDIVI 107

[Close]

BLAST of Cp4.1LG01g22610 vs. ExPASy Swiss-Prot
Match: Q9CQ90 (Uncharacterized protein C9orf85 homolog OS=Mus musculus OX=10090 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.6e-13
Identity = 34/90 (37.78%), Postives = 54/90 (60.00%), Query Frame = 0


Query: 9  KHQNKYAWKPNA-GRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYKPLSEPAK 68
          KHQN + +K +   + +   ++  +        GVC RCK+ ++W+ +Y KYKPLS+P K
Sbjct: 15 KHQNTFTFKNDKFDKSVQTKKINAKLH-----DGVCQRCKEVLEWRVKYSKYKPLSKPKK 74

Query: 69 CQLCSKRAVRQAYHNLCPGCAKQQGVCAKC 98
          C  C ++ V+ +YH +C  CA +  VCAKC
Sbjct: 75 CVKCLQKTVKDSYHIMCRPCACELEVCAKC 99

[Close]

BLAST of Cp4.1LG01g22610 vs. ExPASy Swiss-Prot
Match: Q68FU5 (Uncharacterized protein C9orf85 homolog OS=Rattus norvegicus OX=10116 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.1e-13
Identity = 34/90 (37.78%), Postives = 54/90 (60.00%), Query Frame = 0


Query: 9  KHQNKYAWKPNA-GRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYKPLSEPAK 68
          KHQN + +K +   + +   ++  +        GVC RCK+ ++W+ +Y KYKPLS+P K
Sbjct: 15 KHQNTFTFKNDKFDKSVQTKKINAKLH-----DGVCQRCKEVLEWRVKYSKYKPLSKPKK 74

Query: 69 CQLCSKRAVRQAYHNLCPGCAKQQGVCAKC 98
          C  C ++ V+ +YH +C  CA +  VCAKC
Sbjct: 75 CVKCLQKTVKDSYHIMCRPCACKLEVCAKC 99

[Close]

BLAST of Cp4.1LG01g22610 vs. NCBI nr
Match: XP_023538167.1 (glutamic acid-rich protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 395 bits (1015), Expect = 2.88e-138
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0


Query: 1   MSSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK 60
           MSSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK
Sbjct: 1   MSSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK 60

Query: 61  PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ 120
           PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ
Sbjct: 61  PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ 120

Query: 121 EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTEEEDD 180
           EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTEEEDD
Sbjct: 121 EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTEEEDD 180

Query: 181 DNESTDDTDEDAIEDEDECENEEKDKDENEE 211
           DNESTDDTDEDAIEDEDECENEEKDKDENEE
Sbjct: 181 DNESTDDTDEDAIEDEDECENEEKDKDENEE 211

[Close]

BLAST of Cp4.1LG01g22610 vs. NCBI nr
Match: XP_022954477.1 (glutamic acid-rich protein isoform X1 [Cucurbita moschata])

HSP 1 Score: 393 bits (1009), Expect = 2.36e-137
Identity = 209/211 (99.05%), Postives = 211/211 (100.00%), Query Frame = 0


Query: 1   MSSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK 60
           MSSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK
Sbjct: 1   MSSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK 60

Query: 61  PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ 120
           PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ
Sbjct: 61  PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ 120

Query: 121 EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTEEEDD 180
           EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTE++DD
Sbjct: 121 EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTEDDDD 180

Query: 181 DNESTDDTDEDAIEDEDECENEEKDKDENEE 211
           DNESTDDTDEDAIEDEDECENEEKDKDENEE
Sbjct: 181 DNESTDDTDEDAIEDEDECENEEKDKDENEE 211

[Close]

BLAST of Cp4.1LG01g22610 vs. NCBI nr
Match: KAG7033212.1 (hypothetical protein SDJN02_07266 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 388 bits (997), Expect = 1.54e-135
Identity = 209/211 (99.05%), Postives = 210/211 (99.53%), Query Frame = 0


Query: 1   MSSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK 60
           MSSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK
Sbjct: 1   MSSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK 60

Query: 61  PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ 120
           PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ
Sbjct: 61  PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ 120

Query: 121 EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTEEEDD 180
           EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTE+ DD
Sbjct: 121 EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTED-DD 180

Query: 181 DNESTDDTDEDAIEDEDECENEEKDKDENEE 211
           DNESTDDTDEDAIEDEDECENEEKDKDENEE
Sbjct: 181 DNESTDDTDEDAIEDEDECENEEKDKDENEE 210

[Close]

BLAST of Cp4.1LG01g22610 vs. NCBI nr
Match: XP_022990906.1 (ribosome biogenesis protein BOP1 homolog isoform X1 [Cucurbita maxima])

HSP 1 Score: 384 bits (985), Expect = 1.04e-133
Identity = 207/211 (98.10%), Postives = 208/211 (98.58%), Query Frame = 0


Query: 1   MSSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK 60
           M+SKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK
Sbjct: 1   MNSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK 60

Query: 61  PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ 120
           PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ
Sbjct: 61  PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ 120

Query: 121 EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTEEEDD 180
           EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTEE DD
Sbjct: 121 EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTEE-DD 180

Query: 181 DNESTDDTDEDAIEDEDECENEEKDKDENEE 211
           DNESTD TDEDA EDEDECENEEKDKDENEE
Sbjct: 181 DNESTDGTDEDAYEDEDECENEEKDKDENEE 210

[Close]

BLAST of Cp4.1LG01g22610 vs. NCBI nr
Match: KAG6602535.1 (Eukaryotic translation initiation factor 3 subunit M, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 388 bits (997), Expect = 1.83e-129
Identity = 209/211 (99.05%), Postives = 210/211 (99.53%), Query Frame = 0


Query: 1   MSSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK 60
           MSSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK
Sbjct: 427 MSSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK 486

Query: 61  PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ 120
           PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ
Sbjct: 487 PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ 546

Query: 121 EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTEEEDD 180
           EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTE+ DD
Sbjct: 547 EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTED-DD 606

Query: 181 DNESTDDTDEDAIEDEDECENEEKDKDENEE 211
           DNESTDDTDEDAIEDEDECENEEKDKDENEE
Sbjct: 607 DNESTDDTDEDAIEDEDECENEEKDKDENEE 636

[Close]

BLAST of Cp4.1LG01g22610 vs. ExPASy TrEMBL
Match: A0A6J1GR32 (glutamic acid-rich protein isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456734 PE=4 SV=1)

HSP 1 Score: 393 bits (1009), Expect = 1.14e-137
Identity = 209/211 (99.05%), Postives = 211/211 (100.00%), Query Frame = 0


Query: 1   MSSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK 60
           MSSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK
Sbjct: 1   MSSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK 60

Query: 61  PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ 120
           PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ
Sbjct: 61  PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ 120

Query: 121 EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTEEEDD 180
           EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTE++DD
Sbjct: 121 EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTEDDDD 180

Query: 181 DNESTDDTDEDAIEDEDECENEEKDKDENEE 211
           DNESTDDTDEDAIEDEDECENEEKDKDENEE
Sbjct: 181 DNESTDDTDEDAIEDEDECENEEKDKDENEE 211

[Close]

BLAST of Cp4.1LG01g22610 vs. ExPASy TrEMBL
Match: A0A6J1JP90 (ribosome biogenesis protein BOP1 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487658 PE=4 SV=1)

HSP 1 Score: 384 bits (985), Expect = 5.03e-134
Identity = 207/211 (98.10%), Postives = 208/211 (98.58%), Query Frame = 0


Query: 1   MSSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK 60
           M+SKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK
Sbjct: 1   MNSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK 60

Query: 61  PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ 120
           PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ
Sbjct: 61  PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ 120

Query: 121 EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTEEEDD 180
           EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTEE DD
Sbjct: 121 EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTEE-DD 180

Query: 181 DNESTDDTDEDAIEDEDECENEEKDKDENEE 211
           DNESTD TDEDA EDEDECENEEKDKDENEE
Sbjct: 181 DNESTDGTDEDAYEDEDECENEEKDKDENEE 210

[Close]

BLAST of Cp4.1LG01g22610 vs. ExPASy TrEMBL
Match: A0A1S3CAL0 (uncharacterized protein LOC103498541 OS=Cucumis melo OX=3656 GN=LOC103498541 PE=4 SV=1)

HSP 1 Score: 325 bits (834), Expect = 4.62e-111
Identity = 176/209 (84.21%), Postives = 190/209 (90.91%), Query Frame = 0


Query: 1   MSSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK 60
           MS+K G PKHQN+YAWKPNAGRKINETEVGGRFRPLS+ITGVCLRCKDQIDWKRRYGKYK
Sbjct: 1   MSNKQGPPKHQNRYAWKPNAGRKINETEVGGRFRPLSDITGVCLRCKDQIDWKRRYGKYK 60

Query: 61  PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ 120
           PLSEPAKCQLCSKR VRQAYHNLCPGCAK+QGVCAKCRCRVDQT+GRD+SEVEAEQKMLQ
Sbjct: 61  PLSEPAKCQLCSKRNVRQAYHNLCPGCAKEQGVCAKCRCRVDQTVGRDLSEVEAEQKMLQ 120

Query: 121 EAIKNARERDKRTLLRAMEKGKSKTSNKNKSA-DEESKTGDSIPSSTEEQAALGRTEEED 180
           EAIKNARERD+RTLLRAMEKGK+K+SNKNKSA  EE+K GDSI S TE+QA +GR E   
Sbjct: 121 EAIKNARERDRRTLLRAMEKGKAKSSNKNKSAVTEETKVGDSIHSPTEDQAEIGRNE--- 180

Query: 181 DDNESTDDTDEDAIEDEDE--CENEEKDK 206
           DDNE TDDTD+D  E+EDE  CENEE DK
Sbjct: 181 DDNEITDDTDDDNYENEDEHECENEENDK 206

[Close]

BLAST of Cp4.1LG01g22610 vs. ExPASy TrEMBL
Match: A0A0A0KSJ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640570 PE=4 SV=1)

HSP 1 Score: 322 bits (825), Expect = 1.16e-109
Identity = 174/205 (84.88%), Postives = 186/205 (90.73%), Query Frame = 0


Query: 1   MSSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK 60
           MS+K G PKHQNKYAWKPNAGRKINETEVGGRFRPLS+ITGVCLRCKDQIDWKRRYGKYK
Sbjct: 1   MSNKQGPPKHQNKYAWKPNAGRKINETEVGGRFRPLSDITGVCLRCKDQIDWKRRYGKYK 60

Query: 61  PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ 120
           PLSEP KCQLCSKR VRQAYHNLCPGCAK+QGVCAKCRCRVDQT+GRD+SEVEAEQKMLQ
Sbjct: 61  PLSEPTKCQLCSKRNVRQAYHNLCPGCAKEQGVCAKCRCRVDQTVGRDLSEVEAEQKMLQ 120

Query: 121 EAIKNARERDKRTLLRAMEKGKSKTSNKNKSA-DEESKTGDSIPSSTEEQAALGRTEEED 180
           EAIKNARERD+RTLLRAMEKGK+K+SNKNKSA +EE+K GDSI S TE QA +GR E   
Sbjct: 121 EAIKNARERDRRTLLRAMEKGKAKSSNKNKSAVEEETKDGDSIHSPTEVQAEIGRNE--- 180

Query: 181 DDNESTDDTDEDAIEDEDE--CENE 202
           DDNESTDDTD D  E+EDE  CENE
Sbjct: 181 DDNESTDDTDGDNYENEDEHECENE 202

[Close]

BLAST of Cp4.1LG01g22610 vs. ExPASy TrEMBL
Match: A0A6J1BX54 (uncharacterized protein LOC111006305 OS=Momordica charantia OX=3673 GN=LOC111006305 PE=4 SV=1)

HSP 1 Score: 297 bits (760), Expect = 7.20e-100
Identity = 166/205 (80.98%), Postives = 180/205 (87.80%), Query Frame = 0


Query: 1   MSSKH--GAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGK 60
           MSSK   G PKHQN+YAWKPNAG KINETEVGGRFRPLS+ITGVCLRCKDQIDWKRRYGK
Sbjct: 1   MSSKAKAGPPKHQNRYAWKPNAGVKINETEVGGRFRPLSQITGVCLRCKDQIDWKRRYGK 60

Query: 61  YKPLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKM 120
           YKPL+EPAKCQLCSKRAVRQAYHNLCPGCAK+QGVCAKCRCRVD T+GRD SEVEAEQKM
Sbjct: 61  YKPLAEPAKCQLCSKRAVRQAYHNLCPGCAKEQGVCAKCRCRVDHTVGRDASEVEAEQKM 120

Query: 121 LQEAIKNARERDKRTLLRAMEKGKSKTSNKNKSA-DEESKTGDSIPSSTEEQAALGRTEE 180
           LQEAI+NARERDKRTLLRAM KGKSKTS+K+KSA  EE+K GD  PS  EE A LGR E 
Sbjct: 121 LQEAIRNARERDKRTLLRAMNKGKSKTSDKSKSAVKEETKVGDLTPS-IEEHAKLGRKE- 180

Query: 181 EDDDNESTDDTDEDAIEDEDECENE 202
             DDN+ TD ++ED+ E+EDE ENE
Sbjct: 181 --DDNDITDGSNEDSDENEDEDENE 201

[Close]

BLAST of Cp4.1LG01g22610 vs. TAIR 10
Match: AT3G02220.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2039 (InterPro:IPR019351); Has 215 Blast hits to 215 proteins in 94 species: Archae - 2; Bacteria - 2; Metazoa - 125; Fungi - 4; Plants - 38; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). )

HSP 1 Score: 213.8 bits (543), Expect = 1.4e-55
Identity = 131/223 (58.74%), Postives = 155/223 (69.51%), Query Frame = 0


Query: 1   MSSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK 60
           M S+ G PKHQNK+AW P AG KINETEVGGRFRPLSEITGVC RC++QI WKR+YGKYK
Sbjct: 1   MGSRQGPPKHQNKFAWVPKAGVKINETEVGGRFRPLSEITGVCYRCREQIAWKRKYGKYK 60

Query: 61  PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ 120
            L+E  KCQ C+KR VRQAYH LCPGCAK+Q VCAKC   VDQ +GRDI EVEAEQK+L 
Sbjct: 61  TLTEATKCQKCTKRNVRQAYHKLCPGCAKEQKVCAKCCQSVDQILGRDIYEVEAEQKLLD 120

Query: 121 EAIKNARERDKRTLLRAMEK-GKSKTSNKNKSADEESKTGDSIPSSTEEQAA-------- 180
           E IKNARERD+RTLLRAM K  K   S++  S  + SK GD  PS++ E+ A        
Sbjct: 121 ETIKNARERDRRTLLRAMNKDNKPNKSDEEASRSDSSKVGDVFPSTSLEEYANKSGRVSG 180

Query: 181 ---LGRTEEEDDDNESTDDTDEDAIEDEDECENEEKDKDENEE 212
               G   +   D+ S  ++DED    +DE +  E D DENE+
Sbjct: 181 IIGHGSVPDHAHDDASGPESDEDDNVGDDEHDLRE-DSDENEQ 222

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g22610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96MD7	9.6e-14	36.73	Uncharacterized protein C9orf85 OS=Homo sapiens OX=9606 GN=C9orf85 PE=1 SV=1	[more]
Q9CQ90	1.6e-13	37.78	Uncharacterized protein C9orf85 homolog OS=Mus musculus OX=10090 PE=2 SV=1	[more]
Q68FU5	2.1e-13	37.78	Uncharacterized protein C9orf85 homolog OS=Rattus norvegicus OX=10116 PE=1 SV=1	[more]

BLAST of Cp4.1LG01g22610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023538167.1	2.88e-138	100.00	glutamic acid-rich protein [Cucurbita pepo subsp. pepo]	[more]
XP_022954477.1	2.36e-137	99.05	glutamic acid-rich protein isoform X1 [Cucurbita moschata]	[more]
KAG7033212.1	1.54e-135	99.05	hypothetical protein SDJN02_07266 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022990906.1	1.04e-133	98.10	ribosome biogenesis protein BOP1 homolog isoform X1 [Cucurbita maxima]	[more]
KAG6602535.1	1.83e-129	99.05	Eukaryotic translation initiation factor 3 subunit M, partial [Cucurbita argyros...	[more]

BLAST of Cp4.1LG01g22610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GR32	1.14e-137	99.05	glutamic acid-rich protein isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456...	[more]
A0A6J1JP90	5.03e-134	98.10	ribosome biogenesis protein BOP1 homolog isoform X1 OS=Cucurbita maxima OX=3661 ...	[more]
A0A1S3CAL0	4.62e-111	84.21	uncharacterized protein LOC103498541 OS=Cucumis melo OX=3656 GN=LOC103498541 PE=...	[more]
A0A0A0KSJ8	1.16e-109	84.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640570 PE=4 SV=1	[more]
A0A6J1BX54	7.20e-100	80.98	uncharacterized protein LOC111006305 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]

BLAST of Cp4.1LG01g22610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G02220.1	1.4e-55	58.74	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2039...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 192..211
None	No IPR available	COILS	Coil	Coil	coord: 109..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 137..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 137..161
IPR019351	Protein of unknown function DUF2039	PFAM	PF10217	DUF2039	coord: 8..98 e-value: 4.5E-28 score: 97.4
IPR019351	Protein of unknown function DUF2039	PANTHER	PTHR22876	ZGC:101016	coord: 3..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g22610.1	Cp4.1LG01g22610.1	mRNA