Cp4.1LG01g21900 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g21900
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	HIG1 domain-containing protein
Location	Cp4.1LG01: 20520522 .. 20520950 (+)
RNA-Seq Expression	Cp4.1LG01g21900
Synteny	Cp4.1LG01g21900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCCATTCAAGCTTGGATTTCTGAACACAAACTCACCAGCATTGGTTTGTCTCCTCCTTTCAAGCATCCTCTGTTTTCCTTCTATGTTCTTTCCCATAACATTATATATGAATTTTTTCGTGTAGGAGCTCTGTGGGTGTCTGGGATTGGAGCCTCGCTGGTGTACACAAGATCAAGAACTCCCCTGAAGCCAAGTCTCCGGCTTATCCATGCCAGGTAAACACACGATATCATTCAATGGAGACCATGATATCCATTTTTTTCGTTAAAACTGAAATGGGTTATCTTATTTTATAGGATGCATGCTCAGGCTTTGACATTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGAGAAGGAGAAGAAATCCGTCGCCGACCGAACCGAGGTTTCCGCTTCCGCCGTGCCGGGGAAGTAG

mRNA sequence

ATGGAAGCCATTCAAGCTTGGATTTCTGAACACAAACTCACCAGCATTGGAGCTCTGTGGGTGTCTGGGATTGGAGCCTCGCTGGTGTACACAAGATCAAGAACTCCCCTGAAGCCAAGTCTCCGGCTTATCCATGCCAGGATGCATGCTCAGGCTTTGACATTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGAGAAGGAGAAGAAATCCGTCGCCGACCGAACCGAGGTTTCCGCTTCCGCCGTGCCGGGGAAGTAG

Coding sequence (CDS)

ATGGAAGCCATTCAAGCTTGGATTTCTGAACACAAACTCACCAGCATTGGAGCTCTGTGGGTGTCTGGGATTGGAGCCTCGCTGGTGTACACAAGATCAAGAACTCCCCTGAAGCCAAGTCTCCGGCTTATCCATGCCAGGATGCATGCTCAGGCTTTGACATTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGAGAAGGAGAAGAAATCCGTCGCCGACCGAACCGAGGTTTCCGCTTCCGCCGTGCCGGGGAAGTAG

Protein sequence

MEAIQAWISEHKLTSIGALWVSGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYEKEKKSVADRTEVSASAVPGK

Homology

[Close]

BLAST of Cp4.1LG01g21900 vs. NCBI nr
Match: KAG7033273.1 (hypothetical protein SDJN02_07327, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 168 bits (425), Expect = 2.78e-52
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MEAIQAWISEHKLTSIGALWVSGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWISEHKLTSIGALW SGIGASLVYT+SRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWISEHKLTSIGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKEKKSVADRTEVSASAVPGK 88
          AAVYHYYEKEKK VADRT+VSASAVPGK
Sbjct: 61 AAVYHYYEKEKKGVADRTKVSASAVPGK 88

[Close]

BLAST of Cp4.1LG01g21900 vs. NCBI nr
Match: KAG6578469.1 (hypothetical protein SDJN03_22917, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137 bits (344), Expect = 6.33e-40
Identity = 72/88 (81.82%), Postives = 75/88 (85.23%), Query Frame = 0


Query: 1  MEAIQAWISEHKLTSIGALWVSGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAW+S+HKLTSIGALW SGIGASL YTRS TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSQHKLTSIGALWASGIGASLAYTRSTTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKEKKSVADRTEVSASAV-PG 87
          AAVYHYYE   KS   R+E   SAV PG
Sbjct: 61 AAVYHYYEN--KSAGVRSEAPTSAVVPG 86

[Close]

BLAST of Cp4.1LG01g21900 vs. NCBI nr
Match: KAG6602595.1 (hypothetical protein SDJN03_07828, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135 bits (340), Expect = 2.50e-39
Identity = 68/72 (94.44%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 17 GALWVSGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYEKEKKSVAD 76
          GALW SGIGASLVYT+SRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYEKEKK VAD
Sbjct: 16 GALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYEKEKKGVAD 75

Query: 77 RTEVSASAVPGK 88
          RT+VSASAVPGK
Sbjct: 76 RTKVSASAVPGK 87

[Close]

BLAST of Cp4.1LG01g21900 vs. NCBI nr
Match: XP_004138401.1 (uncharacterized protein LOC101218681 [Cucumis sativus] >KGN45820.1 hypothetical protein Csa_005574 [Cucumis sativus])

HSP 1 Score: 134 bits (336), Expect = 9.91e-39
Identity = 69/88 (78.41%), Postives = 74/88 (84.09%), Query Frame = 0


Query: 1  MEAIQAWISEHKLTSIGALWVSGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAW+SEHKLT+IGALW SGIGASL YTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKEKKSVADRTEVSASAVPGK 88
          AAVYHYY+   K   DR+E    +  GK
Sbjct: 61 AAVYHYYDN--KIGRDRSEAPPVSGGGK 86

[Close]

BLAST of Cp4.1LG01g21900 vs. NCBI nr
Match: KAG6670327.1 (hypothetical protein CIPAW_01G303900 [Carya illinoinensis] >KAG6735126.1 hypothetical protein I3842_01G306100 [Carya illinoinensis])

HSP 1 Score: 132 bits (332), Expect = 3.59e-38
Identity = 67/86 (77.91%), Postives = 74/86 (86.05%), Query Frame = 0


Query: 1  MEAIQAWISEHKLTSIGALWVSGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+W+SEHKLTSIGALW SGIGASL YTR+ +PLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQSWVSEHKLTSIGALWASGIGASLAYTRTTSPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKEKKSVADRTEVSASAVP 86
          AAVYHYYEK      + TE +A+A P
Sbjct: 61 AAVYHYYEKR-----NCTEQAANASP 81

[Close]

BLAST of Cp4.1LG01g21900 vs. ExPASy TrEMBL
Match: A0A0A0K7T4 (HIG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013920 PE=4 SV=1)

HSP 1 Score: 134 bits (336), Expect = 4.80e-39
Identity = 69/88 (78.41%), Postives = 74/88 (84.09%), Query Frame = 0


Query: 1  MEAIQAWISEHKLTSIGALWVSGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAW+SEHKLT+IGALW SGIGASL YTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKEKKSVADRTEVSASAVPGK 88
          AAVYHYY+   K   DR+E    +  GK
Sbjct: 61 AAVYHYYDN--KIGRDRSEAPPVSGGGK 86

[Close]

BLAST of Cp4.1LG01g21900 vs. ExPASy TrEMBL
Match: A0A5A7UEZ1 (Respiratory supercomplex factor 2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001530 PE=4 SV=1)

HSP 1 Score: 132 bits (332), Expect = 1.95e-38
Identity = 67/88 (76.14%), Postives = 75/88 (85.23%), Query Frame = 0


Query: 1  MEAIQAWISEHKLTSIGALWVSGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAW+SEHKLT+IGALW SG+GASL YTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKEKKSVADRTEVSASAVPGK 88
          AAVYHYY+ +  +  DR+E    +  GK
Sbjct: 61 AAVYHYYDNKFGN--DRSEAPPVSRGGK 86

[Close]

BLAST of Cp4.1LG01g21900 vs. ExPASy TrEMBL
Match: A0A067JNW4 (HIG1 domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_03356 PE=4 SV=1)

HSP 1 Score: 128 bits (322), Expect = 6.17e-37
Identity = 57/75 (76.00%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 1  MEAIQAWISEHKLTSIGALWVSGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          ME +Q+W+S+HKLTSIGALW + +G SL YTR+RTPLKPSLRLIHARMHAQA+TLAVLSG
Sbjct: 1  MEGLQSWVSKHKLTSIGALWATAVGGSLAYTRTRTPLKPSLRLIHARMHAQAITLAVLSG 60

Query: 61 AAVYHYYEKEKKSVA 75
          AA+YHYYEK++++VA
Sbjct: 61 AAIYHYYEKQEENVA 75

[Close]

BLAST of Cp4.1LG01g21900 vs. ExPASy TrEMBL
Match: A0A7J7I509 (HIG1 domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_000926 PE=4 SV=1)

HSP 1 Score: 129 bits (324), Expect = 7.47e-37
Identity = 60/69 (86.96%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1   MEAIQAWISEHKLTSIGALWVSGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
           MEA+Q+W+SEHKLTSIG LW SGIGASL Y+R++TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 38  MEALQSWVSEHKLTSIGTLWASGIGASLAYSRAKTPLKPSLRLIHARMHAQALTLAVLSG 97

Query: 61  AAVYHYYEK 69
           AAVYHYYEK
Sbjct: 98  AAVYHYYEK 106

[Close]

BLAST of Cp4.1LG01g21900 vs. ExPASy TrEMBL
Match: A0A5E4EUD8 (HIG1 domain-containing protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B003756 PE=4 SV=1)

HSP 1 Score: 127 bits (320), Expect = 1.05e-36
Identity = 59/71 (83.10%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 1  MEAIQAWISEHKLTSIGALWVSGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+W++EHKL +IGA+WVSGIGASL Y+R+RTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQSWVAEHKLKAIGAIWVSGIGASLAYSRARTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKEK 71
          AA YHYYEK +
Sbjct: 61 AAAYHYYEKHE 71

[Close]

BLAST of Cp4.1LG01g21900 vs. TAIR 10
Match: AT3G05550.1 (Hypoxia-responsive family protein )

HSP 1 Score: 84.0 bits (206), Expect = 6.8e-17
Identity = 37/72 (51.39%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 2  EAIQAWISEHKLTSIGALWVSGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSGA 61
          E I+ W+S+HKL ++G LW+SGI  S+ Y  S+  +K S+++IHAR+HAQALTLA L+GA
Sbjct: 9  EEIRKWVSDHKLRTVGCLWLSGITGSIAYNWSQPAMKTSVKIIHARLHAQALTLAALAGA 68

Query: 62 AVYHYYEKEKKS 74
          AV  YY+ + ++
Sbjct: 69 AVVEYYDHKTEA 80

[Close]

BLAST of Cp4.1LG01g21900 vs. TAIR 10
Match: AT5G27760.1 (Hypoxia-responsive family protein )

HSP 1 Score: 83.2 bits (204), Expect = 1.2e-16
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 4  IQAWISEHKLTSIGALWVSGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAV 63
          I+ WI EHKL ++G LW+SGI  S+ Y  S+  +K S+R+IHAR+HAQALTLA L+GAA 
Sbjct: 11 IREWIIEHKLRTVGCLWLSGISGSIAYNWSKPAMKTSVRIIHARLHAQALTLAALAGAAA 70

Query: 64 YHYYEKEKKSVADR 78
            YY+  K    DR
Sbjct: 71 VEYYD-HKSGATDR 83

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g21900 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g21900 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033273.1	2.78e-52	95.45	hypothetical protein SDJN02_07327, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6578469.1	6.33e-40	81.82	hypothetical protein SDJN03_22917, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6602595.1	2.50e-39	94.44	hypothetical protein SDJN03_07828, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_004138401.1	9.91e-39	78.41	uncharacterized protein LOC101218681 [Cucumis sativus] >KGN45820.1 hypothetical ...	[more]
KAG6670327.1	3.59e-38	77.91	hypothetical protein CIPAW_01G303900 [Carya illinoinensis] >KAG6735126.1 hypothe...	[more]

BLAST of Cp4.1LG01g21900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7T4	4.80e-39	78.41	HIG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013920 PE=4 S...	[more]
A0A5A7UEZ1	1.95e-38	76.14	Respiratory supercomplex factor 2-like protein OS=Cucumis melo var. makuwa OX=11...	[more]
A0A067JNW4	6.17e-37	76.00	HIG1 domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_03356 PE=4 S...	[more]
A0A7J7I509	7.47e-37	86.96	HIG1 domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_000926 PE=4...	[more]
A0A5E4EUD8	1.05e-36	83.10	HIG1 domain-containing protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B003756 PE=4 ...	[more]

BLAST of Cp4.1LG01g21900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05550.1	6.8e-17	51.39	Hypoxia-responsive family protein	[more]
AT5G27760.1	1.2e-16	54.05	Hypoxia-responsive family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007667	Hypoxia induced protein, domain	PFAM	PF04588	HIG_1_N	coord: 10..59 e-value: 1.2E-8 score: 35.0
IPR007667	Hypoxia induced protein, domain	PROSITE	PS51503	HIG1	coord: 1..76 score: 19.712286
None	No IPR available	GENE3D	6.10.140.1320		coord: 13..72 e-value: 1.2E-6 score: 30.2
None	No IPR available	PANTHER	PTHR28018:SF3	RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIAL	coord: 4..76
IPR040153	Respiratory supercomplex factor 2, mitochondrial	PANTHER	PTHR28018	RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIAL	coord: 4..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g21900.1	Cp4.1LG01g21900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0033617	mitochondrial cytochrome c oxidase assembly
cellular_component	GO:0031305	integral component of mitochondrial inner membrane
cellular_component	GO:0005746	mitochondrial respirasome