
Cp4.1LG01g19910 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGGAATTACGTTTCTTGTACACTTCCCACTCCAATCGGCCGGAAACCCTCAAGTTTTCCGGCGACGACGGTGGTTTTCCCAAGTGGGGAAGTTCGGCAGTTTCACGAACCGGTTAAGGCGGCGGAGCTGATGTTCGAGATGCCCAGTTTCTTCGTCGTGAATTCTCAATCGGTTCGTGTTGGCCGGAGATTTTCGGCTCTGATGGCGGATGAGGATCTGGAGATGGGGAATTTGTATGTTATGTTTCCGATGAAGAAGGTGAATTCGGTGGTGTCAGTGACGGATATGGGGGTGCTGCTTCTCGCTGCCGAGCGAGTCTCCGGCAGGAAGAAGCGGCGGATTGTCGGCGGTGGGGAATCTAATGTTTGTGTTTGCCCGAAGGTGGAAGCAGAGGAGTCGGAGATGAAGTTGAAAATGGATGATGATGTGGAGAGGTTTTCGCCGGTGCCGGAATTGGCTCATCGGAGGACTATGTGCAGGTTGAGGAAGCCATTGTTGGAGACCATAGTTGAAGAGCCCATGTGTTCATGA ATGGGGAATTACGTTTCTTGTACACTTCCCACTCCAATCGGCCGGAAACCCTCAAGTTTTCCGGCGACGACGGTGGTTTTCCCAAGTGGGGAAGTTCGGCAGTTTCACGAACCGGTTAAGGCGGCGGAGCTGATGTTCGAGATGCCCAGTTTCTTCGTCGTGAATTCTCAATCGGTTCGTGTTGGCCGGAGATTTTCGGCTCTGATGGCGGATGAGGATCTGGAGATGGGGAATTTGTATGTTATGTTTCCGATGAAGAAGGTGAATTCGGTGGTGTCAGTGACGGATATGGGGGTGCTGCTTCTCGCTGCCGAGCGAGTCTCCGGCAGGAAGAAGCGGCGGATTGTCGGCGGTGGGGAATCTAATGTTTGTGTTTGCCCGAAGGTGGAAGCAGAGGAGTCGGAGATGAAGTTGAAAATGGATGATGATGTGGAGAGGTTTTCGCCGGTGCCGGAATTGGCTCATCGGAGGACTATGTGCAGGTTGAGGAAGCCATTGTTGGAGACCATAGTTGAAGAGCCCATGTGTTCATGA ATGGGGAATTACGTTTCTTGTACACTTCCCACTCCAATCGGCCGGAAACCCTCAAGTTTTCCGGCGACGACGGTGGTTTTCCCAAGTGGGGAAGTTCGGCAGTTTCACGAACCGGTTAAGGCGGCGGAGCTGATGTTCGAGATGCCCAGTTTCTTCGTCGTGAATTCTCAATCGGTTCGTGTTGGCCGGAGATTTTCGGCTCTGATGGCGGATGAGGATCTGGAGATGGGGAATTTGTATGTTATGTTTCCGATGAAGAAGGTGAATTCGGTGGTGTCAGTGACGGATATGGGGGTGCTGCTTCTCGCTGCCGAGCGAGTCTCCGGCAGGAAGAAGCGGCGGATTGTCGGCGGTGGGGAATCTAATGTTTGTGTTTGCCCGAAGGTGGAAGCAGAGGAGTCGGAGATGAAGTTGAAAATGGATGATGATGTGGAGAGGTTTTCGCCGGTGCCGGAATTGGCTCATCGGAGGACTATGTGCAGGTTGAGGAAGCCATTGTTGGAGACCATAGTTGAAGAGCCCATGTGTTCATGA MGNYVSCTLPTPIGRKPSSFPATTVVFPSGEVRQFHEPVKAAELMFEMPSFFVVNSQSVRVGRRFSALMADEDLEMGNLYVMFPMKKVNSVVSVTDMGVLLLAAERVSGRKKRRIVGGGESNVCVCPKVEAEESEMKLKMDDDVERFSPVPELAHRRTMCRLRKPLLETIVEEPMCS Homology
BLAST of Cp4.1LG01g19910 vs. NCBI nr
Match: XP_023534199.1 (uncharacterized protein LOC111795830 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 350 bits (898), Expect = 1.49e-121 Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0
BLAST of Cp4.1LG01g19910 vs. NCBI nr
Match: XP_022959522.1 (uncharacterized protein LOC111460504 [Cucurbita moschata] >KAG6602038.1 hypothetical protein SDJN03_07271, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032732.1 hypothetical protein SDJN02_06782, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 340 bits (871), Expect = 1.95e-117 Identity = 173/177 (97.74%), Postives = 174/177 (98.31%), Query Frame = 0
BLAST of Cp4.1LG01g19910 vs. NCBI nr
Match: XP_022990804.1 (uncharacterized protein LOC111487586 [Cucurbita maxima]) HSP 1 Score: 334 bits (857), Expect = 2.66e-115 Identity = 171/177 (96.61%), Postives = 172/177 (97.18%), Query Frame = 0
BLAST of Cp4.1LG01g19910 vs. NCBI nr
Match: XP_038876498.1 (uncharacterized protein LOC120068930 [Benincasa hispida]) HSP 1 Score: 282 bits (721), Expect = 1.75e-94 Identity = 141/182 (77.47%), Postives = 160/182 (87.91%), Query Frame = 0
BLAST of Cp4.1LG01g19910 vs. NCBI nr
Match: XP_008460510.1 (PREDICTED: uncharacterized protein LOC103499309 [Cucumis melo]) HSP 1 Score: 274 bits (700), Expect = 3.18e-91 Identity = 138/186 (74.19%), Postives = 155/186 (83.33%), Query Frame = 0
BLAST of Cp4.1LG01g19910 vs. ExPASy TrEMBL
Match: A0A6J1H4S2 (uncharacterized protein LOC111460504 OS=Cucurbita moschata OX=3662 GN=LOC111460504 PE=4 SV=1) HSP 1 Score: 340 bits (871), Expect = 9.45e-118 Identity = 173/177 (97.74%), Postives = 174/177 (98.31%), Query Frame = 0
BLAST of Cp4.1LG01g19910 vs. ExPASy TrEMBL
Match: A0A6J1JT13 (uncharacterized protein LOC111487586 OS=Cucurbita maxima OX=3661 GN=LOC111487586 PE=4 SV=1) HSP 1 Score: 334 bits (857), Expect = 1.29e-115 Identity = 171/177 (96.61%), Postives = 172/177 (97.18%), Query Frame = 0
BLAST of Cp4.1LG01g19910 vs. ExPASy TrEMBL
Match: A0A1S3CCM8 (uncharacterized protein LOC103499309 OS=Cucumis melo OX=3656 GN=LOC103499309 PE=4 SV=1) HSP 1 Score: 274 bits (700), Expect = 1.54e-91 Identity = 138/186 (74.19%), Postives = 155/186 (83.33%), Query Frame = 0
BLAST of Cp4.1LG01g19910 vs. ExPASy TrEMBL
Match: A0A0A0KN52 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G416270 PE=4 SV=1) HSP 1 Score: 266 bits (681), Expect = 1.12e-88 Identity = 135/184 (73.37%), Postives = 154/184 (83.70%), Query Frame = 0
BLAST of Cp4.1LG01g19910 vs. ExPASy TrEMBL
Match: A0A5D3DT24 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G002630 PE=4 SV=1) HSP 1 Score: 266 bits (680), Expect = 1.47e-87 Identity = 135/183 (73.77%), Postives = 151/183 (82.51%), Query Frame = 0
BLAST of Cp4.1LG01g19910 vs. TAIR 10
Match: AT3G03280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17350.1); Has 137 Blast hits to 137 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 120.2 bits (300), Expect = 1.7e-27 Identity = 75/179 (41.90%), Postives = 101/179 (56.42%), Query Frame = 0
BLAST of Cp4.1LG01g19910 vs. TAIR 10
Match: AT5G17350.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 113.6 bits (283), Expect = 1.6e-25 Identity = 73/191 (38.22%), Postives = 111/191 (58.12%), Query Frame = 0
BLAST of Cp4.1LG01g19910 vs. TAIR 10
Match: AT4G37240.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 51.2 bits (121), Expect = 9.8e-07 Identity = 30/119 (25.21%), Postives = 56/119 (47.06%), Query Frame = 0
BLAST of Cp4.1LG01g19910 vs. TAIR 10
Match: AT3G50800.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66580.1); Has 249 Blast hits to 249 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 249; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 47.4 bits (111), Expect = 1.4e-05 Identity = 26/95 (27.37%), Postives = 45/95 (47.37%), Query Frame = 0
BLAST of Cp4.1LG01g19910 vs. TAIR 10
Match: AT2G23690.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37240.1); Has 243 Blast hits to 243 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 241; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). ) HSP 1 Score: 47.0 bits (110), Expect = 1.8e-05 Identity = 25/92 (27.17%), Postives = 45/92 (48.91%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|