Cp4.1LG01g19710 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g19710
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Pre-mRNA-splicing factor 38
Location	Cp4.1LG01: 16893746 .. 16903503 (-)
RNA-Seq Expression	Cp4.1LG01g19710
Synteny	Cp4.1LG01g19710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAGGCGTATTACCATTTGGGTTTCTTAAATTTAATCCTGTGTATGAAAGATTTTGTGTGAAAATGGAGTTCCTGGATCCTAATTGTTTGGGTTTTTCAAACTTCAATTGTTATTGGAAGTTCTAGATGTAGTAAATGTTAAGCATCTAAATGAATAAACTAGGAAGGTTGTATTGAGTAGAATGTCAGTTGAAGGTAAGAAACAAGGTGTACTTAAGGACCTCCAACTTGATGATGGCATGGGTTGTTTTGTTCTATCAAAGAGGAGTCTTTTTCACCCCCTCAGATTATTTGAAGCGTCCTCGGGTATTGAGATTATTATCAATAGAAGTAATATTACCATTATCATCTAATCATCGAATAATTAGAAATATTTGCTGAATGGATTTTTCTGCAATTAGTGATTTATTGACTGGTCCATTATCAAGTAACCTGTACAAGTTTGGTAAGGGTTTTTTTTAAGCATAGCACACATTTTTGCAACTTTTGGATGTAGGCTTCAAGTAGGGATGTTCTAGTAACCCGCCGAACAACCCAACTCAAGTTCTAAGGATTGGGTCGGGTTATTTTTATGCATGATTGAAATAGTCATAAGAGTTGTAAATGAATGTAATCTGTGGAGGAAAATTCTGAACAACATAAGTTGATGAAATTGGACATCGAAATATTGTAGTGAAGGTTGAAGGCTTTTTCTGCTTTAAGATTTTGATAGCTAATAATAGTTGAAAACAAGAAGCGAATGAAGGCAGCCTTTCCTGGCTGCTGACTTGAGGAGGATGTCTAGCTTTTTTTTGCTAGCTTGCACCACTTGAAATATTTTTACACATCAGTTCAATGTCACTTGTGGAAAAAAGAAAAATGTTCTTTTGTAGGTGTCTTTCGTTGTTGGTTCCTTTCTTTTTGTATGCAGACCATGTATGTTTCTCATATGCTATCAGATTAGGGTGACTTAATTTGTGTTTGTCTTCTCCAGACTATATCTTCAGGCTTCCTGTTAAAAGTATCAAATTTTCTTTTCATATTATTTTTTAATTACTGAATTTAAATGTAGTATATTCTTGTCCCTGCAGGTAGATGTCTAGTTGATTTATAATGGAGATTAAGACTTGTGGCAAGGCAATTGATTCTTTGCTGGAGAAGGTTTTATGTATGAACATTCTTTCTTCTGATTACTTTAAGGAGCTTTATCGTTTGAAGACATTCCATGAAGTGGTTGATGAAATTTATAACCAAGTTGATCATGTGGAGCCATGGATGACTGGGAACTGCCGTGGTCCTTCAACAGCATTCTGCCTTCTGTACAAGTTTTTCACCATGAAACTTACAGTGAAGCAAATGCATGGGCTATTAAAGCACGAGGATTCTCCTTACATCAGAGCGGTAGGTAGAATCCCTTTGACCCTTAATTATTATTAAATAATAATGAATTGACATGTTATATTCTTGAACTTTTGTTTTTACTCCTTTTGTGAATTCCATATTATTTATTCATTTTCTTTTGTAAATATATTATGGACATTAAGACTGAAAGCTTGCAGTGGGCATATTTTTAAAAATTAATATTCTTCATGTTGCATGTACTTTTACAATCTTTATTGGAACTTTGATTAATAGTGTAGAACTTGGGTCAAATATTGCTGTTGTAAATGGATTACTATGATAATTTAGTTAACTTAACTGGACGTAGATTTGTTAGTGTATTCTTGAAGGTTTCTGTTTCTATAGCATGAAATTTTCTTGTGGGCATTTTAGGAATAATTAATTCTTTCTTTTCATCGTATTTACGTTACAAAGCATTTCAGCTATATCTCTGTTTGTTAGTATGTAGTGATCCATAGATCTTTGAAGAATCTGCATTGCTATATGTTTCTGCTTTTGTTATGTTATATTTTTTAAAAAATAACTTTCTGTTGCTTTTCTTTTCTGATTGGTAGTTGTATATATGTGCTTCTAGATATTTAGTCCTCCCTCAACTGTGGGATGTTGAAGAAGCATCGTATTTTTGTTTGAATTTTGTTATTGTCACCTAGAATAGACTACTAATCTAAACTAGTATGCTTCTTCAAAATAGATTGGAGATTAGCTCTTGGTATATTTATGCGTTAGGCTGCTCCTTTCTAAGTTCTACCTTCATTCCATCTCAATTCTGTTCTGCCAGAACAGTATTGGTTCGGGATAATTGAATAAATAAATAAATAAATAAAAATAACATAAAGCTGCATGTTGTATTTTGATTTAATTATGAACATTCTTTCTCCATAATTTGCTTTCTTACCTTATTATTATGATGCCCTTAGTTGTCCGATGTTTAAGAAATTTTGGGTGTAGCTGTATGATTCGGTTCTGCTACCATTTGACGTTATTTCTTTAATTAATTTTTCCAGATTGGATTCCTCTACTTGAGATATGTTGCAGATACGAAAACTCTGTGGAATTGGTTTGAACCTTATGTTAAAGATGAAGAGGTATATGATACATATGGGTGCTTGTTTTTTGTTTTTATTATTATGAGAACTGGTGCTAAAGATAACAGTTAGCATGCATGTGTTTGGCTTAGAATTTTCCTTAATGTGACTGTAAGTTGTTTTTTGTCGTTTGTATCATTGTTTTCTGCTGCCTTCAATGTAATTGTATTGATAATTGATTAAGCACAGACCTATTTTCAATATTATAGAGAGGTCATATATGCTTGTGAAGAATGGTAGACATTCAAATTTAAAATAACGGCTGTTGATACTTACTAATCCAGTTATTACTCTGTTCTTTTAATTGACTTTCTACTGCAACCCCTCCCTTTGGAGAATGCATTTGTAACCTCCTTTTGTACTACAACGGATGCCTTGCCCCTTTGTATGTGAGGCCATTTTGGCTTGGTTGGTGCGTTTTGAATGAAGTTTCAACTGTTTCTTATCAAGTGAAGACGAATTTTGGCTTGGTTGGTACCAACACCCACCCTAGTTGAATTCTGATTTTGTTCTTTTGCGAGTGGAAGTGAAGATGAATACTGAAGCTCCTTTCTCTTACACTTTATTAGTTATACAAGTGGATCACTTCGTAAGAAACAGTAAAGAGAAGGTGTGGGCAGACACAGGACCTGATTTTTGTATGTTTTTCGTTAAGTTTGAGATCACTCTAACATGTAGAAGTAAAAGAATACTATTTTTCAAAGCTGGAATGGATGAGATTGCAAAGTTCCTTTGAGGAGTCTGCAAACAACTTCTACCAAATGACTCCCCACGAGTTATGATCTAAAAAAATTCAAAACTAGGATTAAAGCTGTAACAACCCAAGCCCAAGCTCACCGCTAGCAGATATTGTTCTCTTTGGGCTTTCCTTTCCAAGCTTCCCTTCAAGGTTCATCCACTAGGGTGATTAAAGCTGTAACAACCCAAGCCCAAGCTCACTGCTAGCAGATATTGTTCTCTTTGGGCTTTCCTTTCCAAGCTTCCCTTCAAGGTTCATCCACTAGGGAGATTAAAGCTGTAACAACCCAAGCCCAAGCTCACTGCTAGCAGATATTGTTCTCTTTGGGCTTTCCTTTCCAAGCTTCCCTTCAAGGTTCATCCACTAGGGAGATTAAAGCTGTAACAACCCAAGCCCAAGCTCACTGCTAGCAGATATTGTTCTCTTTGGGCTTTCCTTTCCAAGCTTCCCTTCAAGGTTCATCCACTAGGGAGAAGTTTCACACCCTTATAAGGGATGTTTTGTTCCCCTCTCCAACTGGTGTGGGATCAATCCACCCTCCTCGAGGGGCCCAGCGTCCTTACTGGCACACTGCCTGGTGTCTGGTTCGAATACCATTTGTAACAGCCCAAGCCCACTGCTAGCAGATATTGTCCTTTTTAGGTTTCCCTTTTTGGGCTTCCCTCAAGGTTTTAAAACGCATCCACTAGGGAGAGTTTTCCACACCCTTATAGGGAGTGCTCTATTCCCCTGTCCAACCAATGTGGGATCTCACAAAAGCTTTCCCCTGATTGAAACATGGTTAATGTCCTCTCACAAACACATTTGTTGTTTTAGGAAATTACCAAGTTGAGTTTTATTGATCTTGTATTGGTGTTGGTTCTTATAAGACTGAGACAAAATAAATATTCGATATCTTCTTGGGTGCTTTTGATTTTGAACGAAGACTAGTGAATTATTTAGTAAGGACGATACAAGTTTTGCACAGCTCCAATTGCAAGTAAATAAATGAGAGGGTTAAACTTCCACCCTCCCTTTGAATTTATTTCTTGGACCAAAATCTCTAAGGAATTCATGAAGTTCAAGAAGATATGGCCACTTGCCATCTGGTTACCTCCCTTGTTCAGCCAACTCCTAAATCTTATATACCAAAGATGATTTAGAAATTTAATACTTTGTTGGAACATATGTTGCATGTTAGAGAGGTTTGAGATCCCATTTTTTGATCTGGCTATGTTTTTTTCACTATTACTAACAAAAGCGTCTCCAAGGGAGAAGTGATTCGCTTACCGGTTGCAAAGTATGGGGGGCGACCATGAGATTGAAGTCCCATCCTTCCATATGAAATTTTTTTTGGTCTAGTTGTTACTATCTCAAAGGTGAGAGCTTATGTTCAAAGTGGACAATATCATATCATTGTGGAAGTTCGTTGTTCCCAACCATTGGTATCAAAGCCCAATTTTAGAATTCTGTTGATTACTTACATCGTGATCTGTAAAGAGTTGCCCATGATGGAGCTGTAAACCCTCGTCACTTCCTGGTATTAGCTGTAGATCATATGATGATTCACTGTTATTGACTTGATTGATTATAATATGTGAACTATGCATTTGTAATTTAAAATAGAGAATAATACAGGCTGGATTAGGAATTTACAATATAGTAAATTGTAGGAACTGAAAGGAAAAATGATGTCCTAACTGGGAAGAGGATGGGGAAGGAGGCAGTCGAAGTGGCCTACAAGGGCATAAAAAGACCTAGCTTTAGAAGCCCCACCCCTGGTGCAGTTAGTAAATGCAACTATGAATTCAGCGATAGGGGTGGACAATAGGGTGCAAACCCAAATGCTCCAAGAATGCCAGACATTGCTGTAATGATGGGAGTGATGCAACCCCTAACACAAATGACTGGACAAATGGTTCCTGAACCTAAATCTTGTGCAAAATGTTGGGTTGGGCTAATGGTTCCTGAACCTAAATCTTGTGCAAAATGTTGGGTAGGTATCCCAACCCAACAATGACAATGTCAACACGATACAGGAAAGCAAGTGTCTTCAGGGACTTCAAAATGATGGGATCTTGAAGTGTTCAAAGTGGTAGCCGAACTGTGGATGTCTTTATTGACGAGATTTTTAGGTGCATGAAGTGTTCGAAAGGACATAGGTCGAGTTGTGCCTTTCATGTTGTGTAGTGATGCTTAACTATGATGGCAATTAGCCTCCACAGTGATTGTTGCGGGCGAAGACCAAATCACGTCAATTTAGTTTAAAGAGGCATTCCTTTGGAAATACTTCAAATTGGTGGTGTGATACAAGAAACAATGAGAATTTTTTAGTATAGAGGAAGGAGACAGATCGATAGATGAGTATGAGTGTGTCTTGGTTGGGCTGGGCAAGGAGAATTTTTTAGTATAGAGCAAGTAGATGAGTATGAGAAAGGAGACACTTGAGGATCTCATCATTTGAAGTACTTGCTCTCTAATGTCGTGTTGACATTGCCCTGGTTGGGCTAGGCCACTTGCCTAGCATTTTGCACTAAATTTGGGGTCGTTTGTGAGGATTGCATCACTCCTATCATTGTAGCAATGTTTGACATTCCTGGAGCGTTTTGGGTTTGCACCTTGTTGTCTCGGTGGGGCTTCCAAAATGGGGTCCTTTTGTTACCTCGTAGGCCTTCTTCGACTACCTGTCATTCTTTGTCCTCTTTTCAGCCGGAAGATCATTTTGATTCTTAGTCTGCAATTTGCCATATAAATTCACAAGTGGGTTTAACAAACATGCTTTATTCTCTATTTTATTTTAAATTACAAATGCGTATCACTTCACTTATTATAATGGTTGTCTAAACTGCCGTCTTTCTTATTAATTTTTAGAGAATTATAGAAAAGGTAACTAAATCTAAATTAAATCTCTAGATATTGATACTAGGTAGCTAAATCTAAATAATAATACCTAGATATCAAGTAACTAAATTTAAATAAATCCAAGATAAATTGGGGAGGTCAACCACTTCGAGATTACACAAATTTCCTTCGACACTCCCTTCAAGCTAAATATCCTTCAACACTCCCCCTGAGTTTGAGTAATAGATTTATTTTTCTCAACTTAAGGGGGAGCGACAATGAATGATATCTATTAGTCAACTTGGAGGAGAGTGTAGAAGGATATTTGTGTGATTAGTTGGCCTGCTTAATGTATCTGGTTGGATTTATTTAGATTTAGTTACCTAATATCTTGTGATTATTATTTAGATTTAGTTAACTAGTATCTAGGGACTATTATTATTATTTAGATTCACTGTTACCTAGTATTTAGGGTATTCAGATTATCTAAAGATTTAGATTTAGTTAATCTTTCTCCTTTATAAAAGGGACATATAATTCTGACAACCATCTAATTTAGACTTGCAACAATAATCAATCAAAATAATTCTAACAGTGAATCATCATACGACCTACAGCTAGGTTTATAGCTTGGTCATGGGCAACTCTCTATAGCTTGTATGTAGTCACAAAGTCTAAAAACTAAGCTATGATACCAACGGTTAGGGACAACGGATCTTCACAATAGTATGATGTTGTCTACTTAATGTTCTAATTTCTTTGCTTTTGGTTCCCCATTTTAAAAAAAGGTTATCTTGACTTCATTTGCATTTTAGTTCCGATGCCAATATTGCAGAGACTCGTGTACCTTGGCTTTTTATCCATTTATGTGTGTACTTCTATCTTAACTTTATAGAAGAGCTTCATGTTCTTTTGTGTTGATTTACTTGGAAGTTGTGGCATATTTGTGTTTCAGCTCTTGGATTCCTTCTATTTCCTCCCAAGTCAACGGGAGATTTTATTTAAGTTCCAAGTCTTCGGACCCTCTGTATAAAATTATTGCTTACCTATGCCAATTGTATCTTAGGCACTTTTTTTTTAAGATACAGAAAGAGAGATGTAGATGGATTTTAAGGATAGGGATGGTGTGGGTTAAGTAGGAATTAGAAGTACCTACATATCGACTACCTGTCATGCACATACATTTCATTTTATGCCAAGTGTCTCTGTCAGACATAGATACGTCTGGACACACTCAAAACACATGTCGACATACTATTTTACGTGTCTTATATACATATATATATTATGTACATCCAATAATTTAAAAGGAACTAACAGACTGTGTTTCAGGAATTTTCACCAGAATCCCATGGACGAATGACTACAATGGGTGTTTATGTGCGTGATTTGCTCCTTGGACAGGTCAGGTTATACACCAACATTTCCCTTCAAATATCATGTTGTTGGGTTATATTTTTCTTGTTTCTTTTTAACGTCTTTGCCTCAAAAACTTGATAAATTGTGTGTATATGTACAGTTGGTTTGTGAATCTTGTGACAACCTGCTGTTGACATTGCTCTATGATCTAACCATGGAATGAAAATGCTTCTTTGTTAGAGCTTTTTTTGTTGTTTCTGGGAACTGATATCCTGTATAAGCTCTGTGCACATTGCAGATCCCGGATGTTACTCTGTCGGGTTCGAAGATTAAGAATTAAATATATATATATATACACAGTATAATAGAGTCGAAGACTCTCACTAAGAGATGAGGAGGTGCAAAAAAGATCAGGAAAAGAAGAACTACCGGATAACGTAACCTCCTCCCTCCCCCTTTCAACTTATTAGGAAATTCTCTGTCCATTAAAACATCTCGTATATTGTCGATTTATCATGGTGACTCAATGCCATGTTCTCTGTTTTTAGAAGGTACTTCTTAGCTTTGAAGGCATGCACGTGCAAAGTGAAGTTGAATTTACAATGTGCCTTTGGTGTCTTGTTCAGTTAGTAGTATTGTCCATTTTTTTGTTTGCTTTTTCTGATTCATTCAAGACTTTTCTTTTAGGTAGATTGGAGGGGACCTTTGACCTAAAGTATCGGTTGTGTTACCTTTTACCTGTCAAAAGATATACCTATTAGAGCTGCCCCTTCATGAACTTTCTTAACTATTCATTCTTGTCACATTATTTCAAGGAATGTTCTTGAAATAATTGAATAAATTCGTTGTTTGGATTTAATTGTTTCTGTTATAGTGGTGAAAAGAGATGAATCAAGTGTATAAGATGGATAGAATGCGTGTAATTAGTGACTTCACTAAATTTGATGATTGAGGAGAGGAATGGAGACTAAATTTGGAGGTGGAAGTGATTTAAATCATATGAAGAACACTCTCTCTGTTCACAACGAATGGAGACTAGAAGGAACAAACTAAAGTGGTTTGTGTATTAATGCTTTATCAGTACAAAGCTGATTAAATCCTGATATCATATCTATATATAGGTTTGCATTTGGCTAGAGAGGATTTCACTTTTGGTTGGCAGTCTTTGTGTTCCAAATGTTCTATATTGGTATTAAGTGATTGTATTGTGTTAGCCATTGAATCCTTGTATTTGTAGTTTGAAAATACTCTCATTTTGTTTTCCCATTGCAGTATTACTTCGATACCCTTTTCCCTCGTATTCCAGTTTCTGTCTTGCGGCAAGTTGCAGCTAATCTTGAAAAGTTGAAGCTTCCCAGCAAACATTCTGGTGTGACAGGGGAAACCCATCGAATAGGGTCTGAAGATACCGCACGGCGGCCACCTTCTGTAAAAGCGTCGCTTTCAGTTTCCTTTGGACAACGAGCCCCACATCGTGCCTCAACTAGGGACTCATCCCCAGTTCGTTGTACACTACCACCATCAGTTAGTGACAGAGATAACAAGGATGATCTACAAAGATCTCCAAGCAGTCGTCATCCTGATAACAGGGAGAGGAGCAGGGATAGAGATCATGACAGGGAGAGGAGCTCGGATAGAGATCACGGTAGGAAGAGGAGCAGGGATAGTAGGGGAAAGGATAGGGACAGAGATCGTGATCGAGACAGAGAGAGGTATAGAAATCGGGAGAGGGATCGAGATAGAGATAGAGAAAGAGAGAAAGGTAGGGGTAGAGATAGGGAGAGGGAGCGAGACAGAGAACGAAGTTATGATTATGATCGGAGGACTCATTATGCTGATAGTAGAAGGGACTACAAAAGGAGTAGTCGTGATAGTGTCACCCGGCATTACCGAAGGAGTCGGAGCCGAAGTAGGAGCAGGAGCAGAAGTCAAAGTTTACTACAAACAGGGAATGATGGCTACCACAAGCGAGAGGCAAGTCCTGTAAGAGGTGGGACTACAGAGAAGACGTCTATTAACCTGGCAAAACTCAAAGATATTTATGGCGATGTGAGGGAGGAGAAAGGGGATTTGAGCAAAGAAAGGTTTAATAATAGAAGGGATAGCAGTGGTGAAGAGGTGATTAGATTGGGAGGTTCCTGGAAATAGTGAGTGATGATATGCTCTAATACAACAAGTTCACTACTCTGTTCAATCTTGTCACTTGAGTTTTTAGTATTCATCTCTCCCAAATCAATCTATTTCATCAGTTGAATGCCCGGACTTGGGCTAAATGTAATACAACCATGTGGTGGTGTGTATAAGATCTTTCACGAAACATTCTTTGAAGGTGTGAAAATTTCTCGCTATTACATAATTAGCCAAAACGAATAAT

mRNA sequence

AGAAGGCGTATTACCATTTGGGTTTCTTAAATTTAATCCTGTGTATGAAAGATTTTGTGTGAAAATGGAGTTCCTGGATCCTAATTGTTTGGGTTTTTCAAACTTCAATTGTTATTGGAAGTTCTAGATGTAGTAAATGTTAAGCATCTAAATGAATAAACTAGGAAGGTTGTATTGAGTAGAATGTCAGTTGAAGGTAAGAAACAAGGTGTACTTAAGGACCTCCAACTTGATGATGGCATGGGTTGTTTTGTTCTATCAAAGAGGAGTCTTTTTCACCCCCTCAGATTATTTGAAGCGTCCTCGGGTAGATGTCTAGTTGATTTATAATGGAGATTAAGACTTGTGGCAAGGCAATTGATTCTTTGCTGGAGAAGGTTTTATGTATGAACATTCTTTCTTCTGATTACTTTAAGGAGCTTTATCGTTTGAAGACATTCCATGAAGTGGTTGATGAAATTTATAACCAAGTTGATCATGTGGAGCCATGGATGACTGGGAACTGCCGTGGTCCTTCAACAGCATTCTGCCTTCTGTACAAGTTTTTCACCATGAAACTTACAGTGAAGCAAATGCATGGGCTATTAAAGCACGAGGATTCTCCTTACATCAGAGCGATTGGATTCCTCTACTTGAGATATGTTGCAGATACGAAAACTCTGTGGAATTGGTTTGAACCTTATGTTAAAGATGAAGAGGAATTTTCACCAGAATCCCATGGACGAATGACTACAATGGGTGTTTATGTGCGTGATTTGCTCCTTGGACAGAGTCGAAGACTCTCACTAAGAGATGAGGAGGTGCAAAAAAGATCAGGAAAAGAAGAACTACCGGATAACTATTACTTCGATACCCTTTTCCCTCGTATTCCAGTTTCTGTCTTGCGGCAAGTTGCAGCTAATCTTGAAAAGTTGAAGCTTCCCAGCAAACATTCTGGTGTGACAGGGGAAACCCATCGAATAGGGTCTGAAGATACCGCACGGCGGCCACCTTCTGTAAAAGCGTCGCTTTCAGTTTCCTTTGGACAACGAGCCCCACATCGTGCCTCAACTAGGGACTCATCCCCAGTTCGTTGTACACTACCACCATCAGTTAGTGACAGAGATAACAAGGATGATCTACAAAGATCTCCAAGCAGTCGTCATCCTGATAACAGGGAGAGGAGCAGGGATAGAGATCATGACAGGGAGAGGAGCTCGGATAGAGATCACGGTAGGAAGAGGAGCAGGGATAGTAGGGGAAAGGATAGGGACAGAGATCGTGATCGAGACAGAGAGAGGTATAGAAATCGGGAGAGGGATCGAGATAGAGATAGAGAAAGAGAGAAAGGTAGGGGTAGAGATAGGGAGAGGGAGCGAGACAGAGAACGAAGTTATGATTATGATCGGAGGACTCATTATGCTGATAGTAGAAGGGACTACAAAAGGAGTAGTCGTGATAGTGTCACCCGGCATTACCGAAGGAGTCGGAGCCGAAGTAGGAGCAGGAGCAGAAGTCAAAGTTTACTACAAACAGGGAATGATGGCTACCACAAGCGAGAGGCAAGTCCTGTAAGAGGTGGGACTACAGAGAAGACGTCTATTAACCTGGCAAAACTCAAAGATATTTATGGCGATGTGAGGGAGGAGAAAGGGGATTTGAGCAAAGAAAGGTTTAATAATAGAAGGGATAGCAGTGGTGAAGAGGTGATTAGATTGGGAGGTTCCTGGAAATAGTGAGTGATGATATGCTCTAATACAACAAGTTCACTACTCTGTTCAATCTTGTCACTTGAGTTTTTAGTATTCATCTCTCCCAAATCAATCTATTTCATCAGTTGAATGCCCGGACTTGGGCTAAATGTAATACAACCATGTGGTGGTGTGTATAAGATCTTTCACGAAACATTCTTTGAAGGTGTGAAAATTTCTCGCTATTACATAATTAGCCAAAACGAATAAT

Coding sequence (CDS)

ATGGAGATTAAGACTTGTGGCAAGGCAATTGATTCTTTGCTGGAGAAGGTTTTATGTATGAACATTCTTTCTTCTGATTACTTTAAGGAGCTTTATCGTTTGAAGACATTCCATGAAGTGGTTGATGAAATTTATAACCAAGTTGATCATGTGGAGCCATGGATGACTGGGAACTGCCGTGGTCCTTCAACAGCATTCTGCCTTCTGTACAAGTTTTTCACCATGAAACTTACAGTGAAGCAAATGCATGGGCTATTAAAGCACGAGGATTCTCCTTACATCAGAGCGATTGGATTCCTCTACTTGAGATATGTTGCAGATACGAAAACTCTGTGGAATTGGTTTGAACCTTATGTTAAAGATGAAGAGGAATTTTCACCAGAATCCCATGGACGAATGACTACAATGGGTGTTTATGTGCGTGATTTGCTCCTTGGACAGAGTCGAAGACTCTCACTAAGAGATGAGGAGGTGCAAAAAAGATCAGGAAAAGAAGAACTACCGGATAACTATTACTTCGATACCCTTTTCCCTCGTATTCCAGTTTCTGTCTTGCGGCAAGTTGCAGCTAATCTTGAAAAGTTGAAGCTTCCCAGCAAACATTCTGGTGTGACAGGGGAAACCCATCGAATAGGGTCTGAAGATACCGCACGGCGGCCACCTTCTGTAAAAGCGTCGCTTTCAGTTTCCTTTGGACAACGAGCCCCACATCGTGCCTCAACTAGGGACTCATCCCCAGTTCGTTGTACACTACCACCATCAGTTAGTGACAGAGATAACAAGGATGATCTACAAAGATCTCCAAGCAGTCGTCATCCTGATAACAGGGAGAGGAGCAGGGATAGAGATCATGACAGGGAGAGGAGCTCGGATAGAGATCACGGTAGGAAGAGGAGCAGGGATAGTAGGGGAAAGGATAGGGACAGAGATCGTGATCGAGACAGAGAGAGGTATAGAAATCGGGAGAGGGATCGAGATAGAGATAGAGAAAGAGAGAAAGGTAGGGGTAGAGATAGGGAGAGGGAGCGAGACAGAGAACGAAGTTATGATTATGATCGGAGGACTCATTATGCTGATAGTAGAAGGGACTACAAAAGGAGTAGTCGTGATAGTGTCACCCGGCATTACCGAAGGAGTCGGAGCCGAAGTAGGAGCAGGAGCAGAAGTCAAAGTTTACTACAAACAGGGAATGATGGCTACCACAAGCGAGAGGCAAGTCCTGTAAGAGGTGGGACTACAGAGAAGACGTCTATTAACCTGGCAAAACTCAAAGATATTTATGGCGATGTGAGGGAGGAGAAAGGGGATTTGAGCAAAGAAAGGTTTAATAATAGAAGGGATAGCAGTGGTGAAGAGGTGATTAGATTGGGAGGTTCCTGGAAATAG

Protein sequence

MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTFHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVKDEEEFSPESHGRMTTMGVYVRDLLLGQSRRLSLRDEEVQKRSGKEELPDNYYFDTLFPRIPVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNKDDLQRSPSSRHPDNRERSRDRDHDRERSSDRDHGRKRSRDSRGKDRDRDRDRDRERYRNRERDRDRDREREKGRGRDRERERDRERSYDYDRRTHYADSRRDYKRSSRDSVTRHYRRSRSRSRSRSRSQSLLQTGNDGYHKREASPVRGGTTEKTSINLAKLKDIYGDVREEKGDLSKERFNNRRDSSGEEVIRLGGSWK

Homology

[Close]

BLAST of Cp4.1LG01g19710 vs. ExPASy Swiss-Prot
Match: Q8RWB1 (Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis thaliana OX=3702 GN=SRL1 PE=1 SV=1)

HSP 1 Score: 437.6 bits (1124), Expect = 1.8e-121
Identity = 277/466 (59.44%), Postives = 321/466 (68.88%), Query Frame = 0


Query: 2   EIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTFHEVVDEIYNQVDHVEPWMTGNCRG 61
           EI++ G+A +SLLEKVL MNILSSDYFKELY LKT+HEV+DEIYNQV+HVEPWM GNCRG
Sbjct: 3   EIQSNGRAYESLLEKVLSMNILSSDYFKELYGLKTYHEVIDEIYNQVNHVEPWMGGNCRG 62

Query: 62  PSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVKD 121
           PSTA+CLLYKFFTMKLTVKQMHGLLKH DSPYIRA+GFLYLRYVAD KTLW W+EPY+KD
Sbjct: 63  PSTAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYLRYVADAKTLWTWYEPYIKD 122

Query: 122 EEEFSPESHGRMTTMGVYVRDLLLGQSRRLSLRDEEVQKRSGKEELPDNYYFDTLFPRIP 181
           +EEFSP S+GRMTTMGVYVRDLLLG                        YYFDTLFPRIP
Sbjct: 123 DEEFSPGSNGRMTTMGVYVRDLLLGL-----------------------YYFDTLFPRIP 182

Query: 182 VSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAST 241
           V V+RQ+ +NLEK+ LP+K SG TG+  R GSEDTARRPPSVKASLSVSFGQRAPHRAST
Sbjct: 183 VPVMRQIVSNLEKMNLPTKPSGSTGDMTR-GSEDTARRPPSVKASLSVSFGQRAPHRAST 242

Query: 242 RDSSPVRCTLPPSVSDRDNKDDLQRSPSSRHPDNRERSRDRDHDRERSSDRDHGRKRSRD 301
           R SSPVR   PP+  DR+  D++Q           +RS  R   R+  SDR         
Sbjct: 243 RGSSPVR-RPPPTGYDRNGGDEVQ-----------QRSPRRSQSRDYYSDR--------- 302

Query: 302 SRGKDRDRDRDRDRERYRNRERDRDRDREREKGRGRDRERERDRERSYDYDRRTHYADSR 361
               D DR R+R+RE+ R RER RDR RERE+  G DR   R      DYD R+     R
Sbjct: 303 ----DSDRQREREREKDRERERGRDRYRERERDYGNDRRSRR------DYDSRSR----R 362

Query: 362 RDYKRSSRDSVTRHYRRSRSRSRSRSRSQSLLQTGNDGYHKREASPVRGGTT-EKTSI-- 421
            DY+    D  +RH RRSRSRSRSRSRS  +         +RE +P R  +  EK+++  
Sbjct: 363 NDYE----DDRSRHDRRSRSRSRSRSRSVQI---------EREPTPKRDSSNKEKSAVTV 393

Query: 422 --NLAKLKDIYGDVREEKGDLSKERFNNRRDSSGEEVIRLGG-SWK 462
             NLAKLKD+YGD   +K D   E F  R+DSS EEVI+LGG SW+
Sbjct: 423 NSNLAKLKDLYGDASSQKRD---EGFGTRKDSSSEEVIKLGGSSWR 393

[Close]

BLAST of Cp4.1LG01g19710 vs. ExPASy Swiss-Prot
Match: Q80SY5 (Pre-mRNA-splicing factor 38B OS=Mus musculus OX=10090 GN=Prpf38b PE=1 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 6.7e-44
Identity = 181/503 (35.98%), Postives = 246/503 (48.91%), Query Frame = 0


Query: 14  LEKVLCMNILSSDYFK-ELYRLKTFHEVVDEIYNQVDHVEPW---------MTGNCRG-- 73
           L  ++  NILSS YFK +LY LKT+HEVVDEIY +V HVEPW          TG C G  
Sbjct: 59  LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR 118

Query: 74  -------PSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNW 133
                   STAFCLLYK FT+KLT KQ+ GL+ H DSPYIRA+GF+Y+RY      LW+W
Sbjct: 119 GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDW 178

Query: 134 FEPYVKDEEEFSPESHGR-MTTMGVYVRDLLLGQSRRLSLRDEEVQKRSGKEELPDNYYF 193
           FE ++ DEE+   ++ G  + T+G  +R  L                   K E     +F
Sbjct: 179 FESFLDDEEDLDVKAGGGCVMTIGEMLRSFLT------------------KLE-----WF 238

Query: 194 DTLFPRIPVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQ 253
            TLFPRIPV V + +   ++      K  G  G    I      RR  S + SLS    +
Sbjct: 239 STLFPRIPVPVQKNIDQQIKTRPRKIKKDGKEG-IEEIDRHVERRRSRSPRRSLS---PR 298

Query: 254 RAPHRASTRDSSPVRCTLPPSVSDRDNKDDLQRSPSSRHPDNRERSRDR--------DHD 313
           R+P R+ +R  S  R     S  DR+ + + +R    R    RE+ R R        D  
Sbjct: 299 RSPRRSRSR--SHHREGHGSSSFDRELEREKERQRLEREAKEREKERRRSRSIDRGLDRR 358

Query: 314 RERSSDRDHGRKRSRDSRGKDRDRDRDRDRERYRNRERDRDRDREREKGRGRDRERERDR 373
           R RS +R   R RSRD +G  RDRDR+R++E  R R RDRD D+ER   R RDRER R+R
Sbjct: 359 RSRSRERHRSRSRSRDRKGDRRDRDREREKENERGRRRDRDYDKERGSDRERDRERSRER 418

Query: 374 -----------ERSYDYDR-----------------------RTHYADSRRDYKRS---S 433
                      E+ +  D+                       R H + SR   KRS   S
Sbjct: 419 SKEQRSRGDGEEKKHKEDKEDRRHRDDKKESKKKHSRSRSRERKHRSRSRNAGKRSRSRS 478

Query: 434 RDSVTRHYRRSRSRSRSRSRSQSLLQTGNDGYHKREASPVRGGTTEKTSINLAKLKDIYG 452
           +D  +RH   S+ ++  RSRS S  +TG+    KRE SP R  + +++       K  + 
Sbjct: 479 KDKSSRHKNESKEKANKRSRSGSQGRTGSVEKRKREHSPSREKSRKRSRSQDRSHKREHN 527

[Close]

BLAST of Cp4.1LG01g19710 vs. ExPASy Swiss-Prot
Match: Q6AXY7 (Pre-mRNA-splicing factor 38B OS=Rattus norvegicus OX=10116 GN=Prpf38b PE=1 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.5e-43
Identity = 176/485 (36.29%), Postives = 235/485 (48.45%), Query Frame = 0


Query: 14  LEKVLCMNILSSDYFK-ELYRLKTFHEVVDEIYNQVDHVEPW---------MTGNCRG-- 73
           L  ++  NILSS YFK +LY LKT+HEVVDEIY +V HVEPW          TG C G  
Sbjct: 58  LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR 117

Query: 74  -------PSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNW 133
                   STAFCLLYK FT+KLT KQ+ GL+ H DSPYIRA+GF+Y+RY      LW+W
Sbjct: 118 GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDW 177

Query: 134 FEPYVKDEEEFSPESHGR-MTTMGVYVRDLLLGQSRRLSLRDEEVQKRSGKEELPDNYYF 193
           FE ++ DEE+   ++ G  + T+G  +R  L                   K E     +F
Sbjct: 178 FESFLDDEEDLDVKAGGGCVMTIGEMLRSFLT------------------KLE-----WF 237

Query: 194 DTLFPRIPVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQ 253
            TLFPRIPV V + +   ++      K  G  G    I      RR  S + SLS    +
Sbjct: 238 STLFPRIPVPVQKNIDQQIKTRPRKIKKDGKEG-VEEIDRHIERRRSRSPRRSLS---PR 297

Query: 254 RAPHRASTRDSSPVRCTLPPSVSDRDNKDDLQRSPSSRHPDNRERSRDR--------DHD 313
           R+P R+ +R  S  R     S  DR+ + + +R    R    RE+ R R        D  
Sbjct: 298 RSPRRSRSR--SHHRDGHGSSSFDRELEREKERQRLEREAKEREKERRRSRSLDRGLDRR 357

Query: 314 RERSSDRDHGRKRSRDSRGKDRDRDRDRDRERYRNRERDRDRDREREKGRGRDRERERDR 373
           R RS +R   R RSRD +G  RDRDR+R++E  R R RDRD D++R   R RDRER R+R
Sbjct: 358 RSRSRERHRSRSRSRDRKGDRRDRDREREKENERGRRRDRDYDKDRGNDRERDRERSRER 417

Query: 374 ERSY-------------DYDRRTHYADSRRDYKRSSRDSVTRHYRRSRSRS-----RSRS 433
            +               D + R H  D +   K+ SR        RSRSRS     RSRS
Sbjct: 418 SKEQRSRGEGEEKKHKEDKEDRRHRDDKKESKKKHSRSRSRERKHRSRSRSRNAGKRSRS 477

Query: 434 RSQSLLQTGNDGYHKREASPVRGGTTEKTSINLAKLKDIYGDVREEKGDLSKERFNNRRD 453
           RS+       +   ++     R G+  +T           G V + K + S  R  +R+ 
Sbjct: 478 RSKDKASKHKNESKEKSNKRSRSGSQGRT-----------GSVEKRKREHSPSREKSRKR 502

[Close]

BLAST of Cp4.1LG01g19710 vs. ExPASy Swiss-Prot
Match: Q5VTL8 (Pre-mRNA-splicing factor 38B OS=Homo sapiens OX=9606 GN=PRPF38B PE=1 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.9e-43
Identity = 183/492 (37.20%), Postives = 246/492 (50.00%), Query Frame = 0


Query: 14  LEKVLCMNILSSDYFK-ELYRLKTFHEVVDEIYNQVDHVEPW---------MTGNCRG-- 73
           L  ++  NILSS YFK +LY LKT+HEVVDEIY +V HVEPW          TG C G  
Sbjct: 58  LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR 117

Query: 74  -------PSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNW 133
                   STAFCLLYK FT+KLT KQ+ GL+ H DSPYIRA+GF+Y+RY      LW+W
Sbjct: 118 GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDW 177

Query: 134 FEPYVKDEEEFSPESHGR-MTTMGVYVRDLLLGQSRRLSLRDEEVQKRSGKEELPDNYYF 193
           FE ++ DEE+   ++ G  + T+G  +R  L                   K E     +F
Sbjct: 178 FESFLDDEEDLDVKAGGGCVMTIGEMLRSFLT------------------KLE-----WF 237

Query: 194 DTLFPRIPVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQ 253
            TLFPRIPV V + +   ++      K  G  G    I      RR  S + SLS    +
Sbjct: 238 STLFPRIPVPVQKNIDQQIKTRPRKIKKDGKEG-AEEIDRHVERRRSRSPRRSLS---PR 297

Query: 254 RAPHRASTRDSSPVRCTLPPSVSDRDNKDDLQRSPSSRHPDNRERSRDR--------DHD 313
           R+P R+ +R  S  R     S  DR+ + + +R    R    RE+ R R        +  
Sbjct: 298 RSPRRSRSR--SHHREGHGSSSFDRELEREKERQRLEREAKEREKERRRSRSIDRGLERR 357

Query: 314 RERSSDRDHGRKRSRDSRGKDRDRDRDRDRERYRNRERDRDRDREREKGRGRDRERERDR 373
           R RS +R   R RSRD +G  RDRDR+R++E  R R RDRD D+ER  G  R++ERER R
Sbjct: 358 RSRSRERHRSRSRSRDRKGDRRDRDREREKENERGRRRDRDYDKER--GNEREKERERSR 417

Query: 374 ERS---------------YDYDRRTHYADSRRDYKRSSRDSVTR-----HYRRSRSRS-- 433
           ERS                D D R H  D +RD K+  + S +R     H  RSRSR+  
Sbjct: 418 ERSKEQRSRGEVEEKKHKEDKDDRRH-RDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAG 477

Query: 434 -RSRSRSQSLLQTGNDGYHKREASPVRGGTTEKT-SINLAKLKD-IYGDVREEKGDLSKE 453
            RSRSRS+       +   ++     R G+  +T S+  +K ++      +  K   SKE
Sbjct: 478 KRSRSRSKEKSSKHKNESKEKSNKRSRSGSQGRTDSVEKSKKREHSPSKEKSRKRSRSKE 517

[Close]

BLAST of Cp4.1LG01g19710 vs. ExPASy Swiss-Prot
Match: Q6P7Y3 (Pre-mRNA-splicing factor 38B OS=Danio rerio OX=7955 GN=prpf38b PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.5e-38
Identity = 173/491 (35.23%), Postives = 237/491 (48.27%), Query Frame = 0


Query: 14  LEKVLCMNILSSDYFK-ELYRLKTFHEVVDEIYNQVDHVEPW---------MTGNCRG-- 73
           L  ++  N+LSS YFK +LY LKT+HEVVDEIY +V+HVEPW          TG C G  
Sbjct: 36  LNPMILTNVLSSPYFKVQLYELKTYHEVVDEIYFKVNHVEPWEKGSRKTAGQTGMCGGVR 95

Query: 74  -------PSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNW 133
                   STAFCLLYK FT+KLT KQ+ GL+ H DSP IRA+GF+Y+RY      L +W
Sbjct: 96  GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHSDSPDIRALGFMYIRYTQPPPDLVDW 155

Query: 134 FEPYVKDEEEFSPESHGR-MTTMGVYVRDLLLGQSRRLSLRDEEVQKRSGKEELPDNYYF 193
           ++ ++ DEEE   ++ G  + T+G  +R  L                   K E     +F
Sbjct: 156 YDEFLDDEEELDVKAGGGCVMTVGEMLRSFLT------------------KLE-----WF 215

Query: 194 DTLFPRIPVSVLRQVAANL------------------EKLKLPSKHSGVTGETHRIGSED 253
            TLFPRIPV V + +  ++                  E    P+  +G  G+  R     
Sbjct: 216 STLFPRIPVPVQKAIDQHMKSRPRKPPQKDEQEEEEEEATAAPAADTGRHGDKRR---SR 275

Query: 254 TARRPPSVKASLSVSFGQRAPHRASTRDSSPVRCTLPPSVSDRDNKDDLQRSPSSRHPDN 313
           T RR PS + S + S   R+ HR     S              D + + +R    +  + 
Sbjct: 276 TPRRSPSPRKSQNRS-RSRSHHRERHGASF-------------DYELERERDRQRKEREG 335

Query: 314 RERSRDRDHDRERSSDRDHGRKRSR-DSRGKDRDRDRDRDRERYRNRER-------DRDR 373
           ++R RDRD DRER  +RD  R+RSR   R  +R R R R+R R R+  R       DRD+
Sbjct: 336 KDRDRDRDRDRERDRERDRDRRRSRTPDRNAERRRSRSRERRRSRSTSRDKRTERKDRDK 395

Query: 374 DR----EREKGRGRDRERERDRERSYDYDRRTHYADSRRDYKRSSRDSVTRHYRRS-RSR 433
           DR    ERE+ R +DRE  +DRERS   D+R+      R +K    +   R  +RS RSR
Sbjct: 396 DREAESERERSRKKDREHHKDRERS--KDKRSKGEGEERRHKDDKEEKKHREEKRSKRSR 455

Query: 434 SRSRSRSQSLLQTGNDGYHKREASPVRGGTTEKTSINLAKLKDIYGDVREEKGDLSKERF 454
           SRSR R     ++          S    G  +      +  KD     R+ K   SKER 
Sbjct: 456 SRSRDRKHKAERSSKKRSRSGSRSRQEAGEEKNRKRERSHSKD-----RQHKRSRSKER- 478

[Close]

BLAST of Cp4.1LG01g19710 vs. NCBI nr
Match: XP_023548529.1 (pre-mRNA splicing factor SR-like 1 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 821 bits (2120), Expect = 1.17e-298
Identity = 438/461 (95.01%), Postives = 438/461 (95.01%), Query Frame = 0


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTFHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTFHEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTFHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120

Query: 121 DEEEFSPESHGRMTTMGVYVRDLLLGQSRRLSLRDEEVQKRSGKEELPDNYYFDTLFPRI 180
           DEEEFSPESHGRMTTMGVYVRDLLLGQ                       YYFDTLFPRI
Sbjct: 121 DEEEFSPESHGRMTTMGVYVRDLLLGQ-----------------------YYFDTLFPRI 180

Query: 181 PVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS 240
           PVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS
Sbjct: 181 PVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS 240

Query: 241 TRDSSPVRCTLPPSVSDRDNKDDLQRSPSSRHPDNRERSRDRDHDRERSSDRDHGRKRSR 300
           TRDSSPVRCTLPPSVSDRDNKDDLQRSPSSRHPDNRERSRDRDHDRERSSDRDHGRKRSR
Sbjct: 241 TRDSSPVRCTLPPSVSDRDNKDDLQRSPSSRHPDNRERSRDRDHDRERSSDRDHGRKRSR 300

Query: 301 DSRGKDRDRDRDRDRERYRNRERDRDRDREREKGRGRDRERERDRERSYDYDRRTHYADS 360
           DSRGKDRDRDRDRDRERYRNRERDRDRDREREKGRGRDRERERDRERSYDYDRRTHYADS
Sbjct: 301 DSRGKDRDRDRDRDRERYRNRERDRDRDREREKGRGRDRERERDRERSYDYDRRTHYADS 360

Query: 361 RRDYKRSSRDSVTRHYRRSRSRSRSRSRSQSLLQTGNDGYHKREASPVRGGTTEKTSINL 420
           RRDYKRSSRDSVTRHYRRSRSRSRSRSRSQSLLQTGNDGYHKREASPVRGGTTEKTSINL
Sbjct: 361 RRDYKRSSRDSVTRHYRRSRSRSRSRSRSQSLLQTGNDGYHKREASPVRGGTTEKTSINL 420

Query: 421 AKLKDIYGDVREEKGDLSKERFNNRRDSSGEEVIRLGGSWK 461
           AKLKDIYGDVREEKGDLSKERFNNRRDSSGEEVIRLGGSWK
Sbjct: 421 AKLKDIYGDVREEKGDLSKERFNNRRDSSGEEVIRLGGSWK 438

[Close]

BLAST of Cp4.1LG01g19710 vs. NCBI nr
Match: XP_022955756.1 (pre-mRNA splicing factor SR-like 1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 776 bits (2004), Expect = 7.71e-281
Identity = 424/471 (90.02%), Postives = 430/471 (91.30%), Query Frame = 0


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTFHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKT+HEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120

Query: 121 DEEEFSPESHGRMTTMGVYVRDLLLGQSRRLSLRDEEVQKRSGKEELPDNYYFDTLFPRI 180
           DEEEFSPESHGRMTTMG YVRDLLLGQ                       YYFDTLFPRI
Sbjct: 121 DEEEFSPESHGRMTTMGAYVRDLLLGQ-----------------------YYFDTLFPRI 180

Query: 181 PVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS 240
           PVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS
Sbjct: 181 PVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS 240

Query: 241 TRDSSPVRCTLPPSVSDRDNKDDLQRSPSSRHPDNRERSRDRDHDRERSSDRDHGRKRSR 300
           TRDSSPVRCTLPPSVSDRDN+DDLQRSPSSRHPDN ERSRDRDHDRERSSDRDHGRKRSR
Sbjct: 241 TRDSSPVRCTLPPSVSDRDNRDDLQRSPSSRHPDNGERSRDRDHDRERSSDRDHGRKRSR 300

Query: 301 D------SRGKDRDRDRDRDRERYRNRERDRDRDREREKGRGRDRERERDR----ERSYD 360
           D      SR KDRDRDRDRDRERYRNRERDRDRD EREKGRGRD ERERDR    ERSYD
Sbjct: 301 DRDHNRDSRRKDRDRDRDRDRERYRNRERDRDRDGEREKGRGRDMERERDRDRDRERSYD 360

Query: 361 YDRRTHYADSRRDYKRSSRDSVTRHYRRSRSRSRSRSRSQSLLQTGNDGYHKREASPVRG 420
           YDRRTHYADSRRDYKRSSRDSV +HY+RS SRSRSRSRSQSL QTGNDGYHKREASPVRG
Sbjct: 361 YDRRTHYADSRRDYKRSSRDSVAQHYQRSFSRSRSRSRSQSL-QTGNDGYHKREASPVRG 420

Query: 421 GTTEKTSINLAKLKDIYGDVREEKGDLSKERFNNRRDSSGEEVIRLGGSWK 461
           GTTEKTS+NLAKLKDIYGDVREEKGDLSKERF+NRRDSSGEEVIRLGGSWK
Sbjct: 421 GTTEKTSMNLAKLKDIYGDVREEKGDLSKERFDNRRDSSGEEVIRLGGSWK 447

[Close]

BLAST of Cp4.1LG01g19710 vs. NCBI nr
Match: KAG7032708.1 (Pre-mRNA splicing factor SR-like 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 775 bits (2000), Expect = 3.64e-280
Identity = 426/474 (89.87%), Postives = 431/474 (90.93%), Query Frame = 0


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTFHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKT+HEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120

Query: 121 DEEEFSPESHGRMTTMGVYVRDLLLGQSRRLSLRDEEVQKRSGKEELPDNYYFDTLFPRI 180
           DEEEFSPESHGRMTTMG YVRDLLLGQ                       YYFDTLFPRI
Sbjct: 121 DEEEFSPESHGRMTTMGAYVRDLLLGQ-----------------------YYFDTLFPRI 180

Query: 181 PVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS 240
           PVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS
Sbjct: 181 PVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS 240

Query: 241 TRDSSPVRCTLPPSVSDRDNKDDLQRSPSSRHPDNRERSRDRDHDRERSSDRDHGRKRS- 300
           TRDSSPVRCTLPPSVSDRDN+DDLQRSPSSRHPDN ERSRDRDHDRERSSDRDHGRK S 
Sbjct: 241 TRDSSPVRCTLPPSVSDRDNRDDLQRSPSSRHPDNGERSRDRDHDRERSSDRDHGRKMSK 300

Query: 301 -----RDSRGKDRDRDRDRDRERYRNRERDRDRDR--EREKGRGRDRERERDR--ERSYD 360
                RDSR KDRDRDRDRDRER RNRERDRDRDR  EREKGRGRDRERERDR  ERSYD
Sbjct: 301 DRDHNRDSRRKDRDRDRDRDRERSRNRERDRDRDRDREREKGRGRDRERERDRDRERSYD 360

Query: 361 YDRRTHYADSRRDYKRSSRDSVTRHYRRSRSRSRSRSRSQSL---LQTGNDGYHKREASP 420
           YDRRTH+ADSRRDYKRSSRDSV RHYRRSRSRSRSRSRS+S    LQTGNDGYHKREASP
Sbjct: 361 YDRRTHHADSRRDYKRSSRDSVARHYRRSRSRSRSRSRSRSRSQSLQTGNDGYHKREASP 420

Query: 421 VRGGTTEKTSINLAKLKDIYGDVREEKGDLSKERFNNRRDSSGEEVIRLGGSWK 461
           VRGGTTEKTS+NLAKLKDIYGDVREEKGDLSKERFNNRRDSSGEEVIRLGGSWK
Sbjct: 421 VRGGTTEKTSMNLAKLKDIYGDVREEKGDLSKERFNNRRDSSGEEVIRLGGSWK 451

[Close]

BLAST of Cp4.1LG01g19710 vs. NCBI nr
Match: XP_038875168.1 (pre-mRNA splicing factor SR-like 1 isoform X1 [Benincasa hispida] >XP_038875169.1 pre-mRNA splicing factor SR-like 1 isoform X1 [Benincasa hispida])

HSP 1 Score: 677 bits (1747), Expect = 1.29e-241
Identity = 388/481 (80.67%), Postives = 408/481 (84.82%), Query Frame = 0


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTFHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGK IDSLLEKVLCMNILSSDYFKELYRLKT+HEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVAD KTLW WFEPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWTWFEPYVK 120

Query: 121 DEEEFSPESHGRMTTMGVYVRDLLLGQSRRLSLRDEEVQKRSGKEELPDNYYFDTLFPRI 180
           DEEEFSP SHGRMTTMGVYVRDLLLGQ                       YYFDTLFPRI
Sbjct: 121 DEEEFSPGSHGRMTTMGVYVRDLLLGQ-----------------------YYFDTLFPRI 180

Query: 181 PVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS 240
           PV VLRQV ANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS
Sbjct: 181 PVPVLRQVVANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS 240

Query: 241 TRDSSPVRCTLPPSVSDRDNKDDLQRSPSSR------HPDNRERSRDRDHDRERSSDRDH 300
           TRDSSPVR TLPPS +DRDN DDL+RSPSSR      HPD+RERSRDRD+DRERS DRD+
Sbjct: 241 TRDSSPVRRTLPPSANDRDNSDDLRRSPSSRRSQSREHPDSRERSRDRDYDRERSRDRDY 300

Query: 301 GRKRSRD-------SRGKDRDRDR--DRDRERYRNRERDRDRDREREKGRGRDRERERDR 360
            R+RSRD        RG+DRDRDR  DRDRE+YR+RERDRDR  ERE+ R R+R+RERDR
Sbjct: 301 DRERSRDRDHDRDRDRGRDRDRDREYDRDREKYRDRERDRDR--ERERARDRERDRERDR 360

Query: 361 ERSYDYDRRTHYAD--SRRDYKRSSRDSVTRHYRRSRSRSRSRSRSQSLLQTGNDGYHKR 420
           ERSYDYDRRTHY D  SRRD++RSSRD  +RHYRRSRSRSRSRSRS+SL QTGN  +H+R
Sbjct: 361 ERSYDYDRRTHYNDRESRRDFERSSRDGGSRHYRRSRSRSRSRSRSRSL-QTGN-AHHER 420

Query: 421 EASPVRGGTTEKTSI---NLAKLKDIYGDVREEKGDLSKERFNNRRDSSGEEVIRLGGSW 461
           E SP RGGTTEKTS    NLAKLKDIYGDV E+KGD SKER N RRDSSGEEVIRLGG W
Sbjct: 421 EPSPARGGTTEKTSSISSNLAKLKDIYGDVSEQKGDSSKERVN-RRDSSGEEVIRLGGYW 453

[Close]

BLAST of Cp4.1LG01g19710 vs. NCBI nr
Match: XP_022993767.1 (pre-mRNA splicing factor SR-like 1 [Cucurbita maxima])

HSP 1 Score: 669 bits (1725), Expect = 3.44e-238
Identity = 385/483 (79.71%), Postives = 407/483 (84.27%), Query Frame = 0


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTFHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGK IDSLLEKVLCMNILSSDYFKELYRLKT+HEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVAD KTLWNW EPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWVEPYVK 120

Query: 121 DEEEFSPESHGRMTTMGVYVRDLLLGQSRRLSLRDEEVQKRSGKEELPDNYYFDTLFPRI 180
           DEEEFSP SHGRMTTMGVYVRDLLLGQ                       YYFDTLFPRI
Sbjct: 121 DEEEFSPGSHGRMTTMGVYVRDLLLGQ-----------------------YYFDTLFPRI 180

Query: 181 PVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS 240
           PV VLRQV ANLEKLKLPSKHSGVTGETHR+GSEDTARRPPSVKASLSVSFGQRAPHRAS
Sbjct: 181 PVPVLRQVVANLEKLKLPSKHSGVTGETHRLGSEDTARRPPSVKASLSVSFGQRAPHRAS 240

Query: 241 TRDSSPVRCTLPPSVSDRDNKDDLQRSPSSR------HPDNRERSRDRDHDRERSSDRDH 300
           TRDSSPVR TLP S  DRDN DDL+RSPSSR      HPD RERSRDRD+DRERS DRD+
Sbjct: 241 TRDSSPVRRTLPTSAIDRDNSDDLRRSPSSRRSQSREHPDTRERSRDRDYDRERSRDRDY 300

Query: 301 GRKRSRD-----SRGKDRDRDR--DRDRERYRNRERDRDRDREREKGRGRDRERERDRER 360
            R+RSRD      RG+DRDR+R  DRDRE+YR+RERDR+RDREREK R R+R+RERDRER
Sbjct: 301 DRERSRDREYDRDRGRDRDREREHDRDREKYRDRERDRERDREREKARDRERDRERDRER 360

Query: 361 SYDYDRRTHYAD--SRRDYKRSSRDSVTRHYRRSRSRSRSRSRSQSLLQTGND--GYHKR 420
           SYDYDRRTHY D   RRD++RSSRD  TRHYRRSRSRSRSRS S+SL QTG +  G+H+R
Sbjct: 361 SYDYDRRTHYTDREGRRDFERSSRDGGTRHYRRSRSRSRSRSSSRSL-QTGVNAHGHHER 420

Query: 421 EASPVRGGTTEKTSI---NLAKLKDIYGDVREEKG--DLSKERFNNRRDSSGEEVIRLGG 461
           E SP RG T+EKTSI   NLAKLKD+YGDV E+KG  D SKER N RRDSSGEEVIRLGG
Sbjct: 421 EPSPARGRTSEKTSIISSNLAKLKDMYGDVSEQKGGGDPSKERIN-RRDSSGEEVIRLGG 458

[Close]

BLAST of Cp4.1LG01g19710 vs. ExPASy TrEMBL
Match: A0A6J1GUQ9 (Pre-mRNA-splicing factor 38 OS=Cucurbita moschata OX=3662 GN=LOC111457654 PE=3 SV=1)

HSP 1 Score: 776 bits (2004), Expect = 3.73e-281
Identity = 424/471 (90.02%), Postives = 430/471 (91.30%), Query Frame = 0


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTFHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKT+HEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120

Query: 121 DEEEFSPESHGRMTTMGVYVRDLLLGQSRRLSLRDEEVQKRSGKEELPDNYYFDTLFPRI 180
           DEEEFSPESHGRMTTMG YVRDLLLGQ                       YYFDTLFPRI
Sbjct: 121 DEEEFSPESHGRMTTMGAYVRDLLLGQ-----------------------YYFDTLFPRI 180

Query: 181 PVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS 240
           PVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS
Sbjct: 181 PVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS 240

Query: 241 TRDSSPVRCTLPPSVSDRDNKDDLQRSPSSRHPDNRERSRDRDHDRERSSDRDHGRKRSR 300
           TRDSSPVRCTLPPSVSDRDN+DDLQRSPSSRHPDN ERSRDRDHDRERSSDRDHGRKRSR
Sbjct: 241 TRDSSPVRCTLPPSVSDRDNRDDLQRSPSSRHPDNGERSRDRDHDRERSSDRDHGRKRSR 300

Query: 301 D------SRGKDRDRDRDRDRERYRNRERDRDRDREREKGRGRDRERERDR----ERSYD 360
           D      SR KDRDRDRDRDRERYRNRERDRDRD EREKGRGRD ERERDR    ERSYD
Sbjct: 301 DRDHNRDSRRKDRDRDRDRDRERYRNRERDRDRDGEREKGRGRDMERERDRDRDRERSYD 360

Query: 361 YDRRTHYADSRRDYKRSSRDSVTRHYRRSRSRSRSRSRSQSLLQTGNDGYHKREASPVRG 420
           YDRRTHYADSRRDYKRSSRDSV +HY+RS SRSRSRSRSQSL QTGNDGYHKREASPVRG
Sbjct: 361 YDRRTHYADSRRDYKRSSRDSVAQHYQRSFSRSRSRSRSQSL-QTGNDGYHKREASPVRG 420

Query: 421 GTTEKTSINLAKLKDIYGDVREEKGDLSKERFNNRRDSSGEEVIRLGGSWK 461
           GTTEKTS+NLAKLKDIYGDVREEKGDLSKERF+NRRDSSGEEVIRLGGSWK
Sbjct: 421 GTTEKTSMNLAKLKDIYGDVREEKGDLSKERFDNRRDSSGEEVIRLGGSWK 447

[Close]

BLAST of Cp4.1LG01g19710 vs. ExPASy TrEMBL
Match: A0A6J1JTS5 (Pre-mRNA-splicing factor 38 OS=Cucurbita maxima OX=3661 GN=LOC111489677 PE=3 SV=1)

HSP 1 Score: 669 bits (1725), Expect = 1.67e-238
Identity = 385/483 (79.71%), Postives = 407/483 (84.27%), Query Frame = 0


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTFHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGK IDSLLEKVLCMNILSSDYFKELYRLKT+HEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVAD KTLWNW EPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWVEPYVK 120

Query: 121 DEEEFSPESHGRMTTMGVYVRDLLLGQSRRLSLRDEEVQKRSGKEELPDNYYFDTLFPRI 180
           DEEEFSP SHGRMTTMGVYVRDLLLGQ                       YYFDTLFPRI
Sbjct: 121 DEEEFSPGSHGRMTTMGVYVRDLLLGQ-----------------------YYFDTLFPRI 180

Query: 181 PVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS 240
           PV VLRQV ANLEKLKLPSKHSGVTGETHR+GSEDTARRPPSVKASLSVSFGQRAPHRAS
Sbjct: 181 PVPVLRQVVANLEKLKLPSKHSGVTGETHRLGSEDTARRPPSVKASLSVSFGQRAPHRAS 240

Query: 241 TRDSSPVRCTLPPSVSDRDNKDDLQRSPSSR------HPDNRERSRDRDHDRERSSDRDH 300
           TRDSSPVR TLP S  DRDN DDL+RSPSSR      HPD RERSRDRD+DRERS DRD+
Sbjct: 241 TRDSSPVRRTLPTSAIDRDNSDDLRRSPSSRRSQSREHPDTRERSRDRDYDRERSRDRDY 300

Query: 301 GRKRSRD-----SRGKDRDRDR--DRDRERYRNRERDRDRDREREKGRGRDRERERDRER 360
            R+RSRD      RG+DRDR+R  DRDRE+YR+RERDR+RDREREK R R+R+RERDRER
Sbjct: 301 DRERSRDREYDRDRGRDRDREREHDRDREKYRDRERDRERDREREKARDRERDRERDRER 360

Query: 361 SYDYDRRTHYAD--SRRDYKRSSRDSVTRHYRRSRSRSRSRSRSQSLLQTGND--GYHKR 420
           SYDYDRRTHY D   RRD++RSSRD  TRHYRRSRSRSRSRS S+SL QTG +  G+H+R
Sbjct: 361 SYDYDRRTHYTDREGRRDFERSSRDGGTRHYRRSRSRSRSRSSSRSL-QTGVNAHGHHER 420

Query: 421 EASPVRGGTTEKTSI---NLAKLKDIYGDVREEKG--DLSKERFNNRRDSSGEEVIRLGG 461
           E SP RG T+EKTSI   NLAKLKD+YGDV E+KG  D SKER N RRDSSGEEVIRLGG
Sbjct: 421 EPSPARGRTSEKTSIISSNLAKLKDMYGDVSEQKGGGDPSKERIN-RRDSSGEEVIRLGG 458

[Close]

BLAST of Cp4.1LG01g19710 vs. ExPASy TrEMBL
Match: A0A6J1CK04 (Pre-mRNA-splicing factor 38 OS=Momordica charantia OX=3673 GN=LOC111011867 PE=3 SV=1)

HSP 1 Score: 661 bits (1705), Expect = 2.13e-235
Identity = 381/488 (78.07%), Postives = 405/488 (82.99%), Query Frame = 0


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTFHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGK IDSLLEKVLCMNILSSDYFKELYRLKT+HEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVAD KTLWNWFEPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWFEPYVK 120

Query: 121 DEEEFSPESHGRMTTMGVYVRDLLLGQSRRLSLRDEEVQKRSGKEELPDNYYFDTLFPRI 180
           DEEEFSP SHGRMTTMGVYVRDLLLGQ                       YYFDTLFPRI
Sbjct: 121 DEEEFSPGSHGRMTTMGVYVRDLLLGQ-----------------------YYFDTLFPRI 180

Query: 181 PVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS 240
           PV VLRQV ANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS
Sbjct: 181 PVPVLRQVVANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS 240

Query: 241 TRDSSPVRCTLPPSVSDRDNKDDLQRSPSSR------HPDNRERSRDRDHDRERSSDRDH 300
           TRDSSPVR TLPPS +D+DN DD++RSPSSR      HPDN ERSRDRD+DRERS DRDH
Sbjct: 241 TRDSSPVRRTLPPSANDKDNGDDVRRSPSSRRSQSREHPDNGERSRDRDYDRERSRDRDH 300

Query: 301 GRKRSRD-----SRGKDRDRDRDRDRERYRNRERDRDRDREREKGRGRDRERER------ 360
            R RSRD      RG+DRDRDRDRDRE+YR+RERDRDRDR+R++ R R+RERER      
Sbjct: 301 DRDRSRDRDHDRDRGRDRDRDRDRDREKYRDRERDRDRDRDRDRDRDRERERERERVRER 360

Query: 361 ----DRERSYDYDRRTHYAD--SRRDYKRSSRDSVTRHYRRSRSRSRSRSRSQSLLQTGN 420
               DRERSYDYDRR+HYAD  SRRDY++SSRD  +RHYRRSRSRSRSRSRS+SL QT N
Sbjct: 361 ERDRDRERSYDYDRRSHYADRDSRRDYEKSSRDDGSRHYRRSRSRSRSRSRSRSL-QTVN 420

Query: 421 DGYHKREASPVRGGTTEKTS---INLAKLKDIYGDVREEKGDLSKERFNNRRDSSGEEVI 461
             +H+R  SPVR G T+KTS    NLAKLKDIYGDV ++KGD SKER   +RD SGEEV 
Sbjct: 421 -AHHERVPSPVRDGNTDKTSNISSNLAKLKDIYGDVSDQKGDCSKERVP-KRDGSGEEVF 462

[Close]

BLAST of Cp4.1LG01g19710 vs. ExPASy TrEMBL
Match: A0A6J1FF63 (Pre-mRNA-splicing factor 38 OS=Cucurbita moschata OX=3662 GN=LOC111444923 PE=3 SV=1)

HSP 1 Score: 658 bits (1697), Expect = 3.38e-234
Identity = 382/490 (77.96%), Postives = 405/490 (82.65%), Query Frame = 0


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTFHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGK IDSLLEKVLCMNILSSDYFKELYRLKT+HEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVAD KTLWNW EPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWVEPYVK 120

Query: 121 DEEEFSPESHGRMTTMGVYVRDLLLGQSRRLSLRDEEVQKRSGKEELPDNYYFDTLFPRI 180
           DEEEFSP SHGRMTTMGVYVRDLLLGQ                       YYFDTLFPRI
Sbjct: 121 DEEEFSPGSHGRMTTMGVYVRDLLLGQ-----------------------YYFDTLFPRI 180

Query: 181 PVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS 240
           PV VLRQV ANLEKLKLPSKHSGVTGETHR+GSEDTARRPPSVKASLSVSFGQRAPHRAS
Sbjct: 181 PVPVLRQVVANLEKLKLPSKHSGVTGETHRLGSEDTARRPPSVKASLSVSFGQRAPHRAS 240

Query: 241 TRDSSPVRCTLPPSVSDRDNKDDLQRSPSSR------HPDNRERSRDRDHDRERSSDRDH 300
           TRDSSPVR TLP S  DRDN DDL+RSPSSR      HPD RERSRDRD+DRERS DRD+
Sbjct: 241 TRDSSPVRRTLPTSAIDRDNNDDLRRSPSSRRSQSREHPDTRERSRDRDYDRERSRDRDY 300

Query: 301 GRKRSRD---------SRGKDRDRDR--DRDRERYRNRERDRDRDREREKGRGRDRERER 360
            R+RSRD          RG+DRDR++  DRDRE+YR+RERDR+RDREREK R    +RER
Sbjct: 301 DRERSRDREYDRDRDRDRGRDRDREQEHDRDREKYRDRERDRERDREREKAR----DRER 360

Query: 361 DRERSYDYDRRTHYAD--SRRDYKRSSRDSVTRHYRRSRSRSRSRSRSQSLLQTGND--G 420
           DRERSYDYDRRTHY D   RRD++RSSRD  TRHYRRSRSRSRSRSRS+SL QTG +  G
Sbjct: 361 DRERSYDYDRRTHYTDRDGRRDFERSSRDGGTRHYRRSRSRSRSRSRSRSL-QTGVNAHG 420

Query: 421 YHKREASPVRGGTTEKTSI---NLAKLKDIYGDVREEKG-----DLSKERFNNRRDSSGE 461
           +H+RE SP RG T+EKTSI   NLAKLKD+YGDV E+KG     D SKER N RRDSSGE
Sbjct: 421 HHEREPSPARGRTSEKTSIISSNLAKLKDMYGDVSEQKGGGGGGDSSKERIN-RRDSSGE 461

[Close]

BLAST of Cp4.1LG01g19710 vs. ExPASy TrEMBL
Match: A0A5D3D5T6 (Pre-mRNA-splicing factor 38 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00040 PE=3 SV=1)

HSP 1 Score: 654 bits (1686), Expect = 2.05e-232
Identity = 380/501 (75.85%), Postives = 405/501 (80.84%), Query Frame = 0


Query: 1   MEIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTFHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGK IDSLLEKVLCMNILSSDYFKELYRLKT+HEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVAD KTLWNWFEPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWFEPYVK 120

Query: 121 DEEEFSPESHGRMTTMGVYVRDLLLGQSRRLSLRDEEVQKRSGKEELPDNYYFDTLFPRI 180
           D+EEFSP SHGRMTTMGVYVRDLLLGQ                       YYFDTLFPRI
Sbjct: 121 DDEEFSPGSHGRMTTMGVYVRDLLLGQ-----------------------YYFDTLFPRI 180

Query: 181 PVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS 240
           PV VLRQV +NLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS
Sbjct: 181 PVPVLRQVVSNLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAS 240

Query: 241 TRDSSPVRCTLPPSVSDRDNKDDLQRSPSSR------HPDNRERSRDRDHDRERSSDRDH 300
           TRDSSPVR TLP SV+DRD  DDL+RSPS+R      HPD+RERSRDR++DRERS DR++
Sbjct: 241 TRDSSPVRRTLPSSVNDRDINDDLRRSPSNRRSQSREHPDSRERSRDREYDRERSRDREY 300

Query: 301 GRKRSRD---------------------------SRGKDRDRDR--DRDRERYRNRERDR 360
            R+RSRD                            RG+DRDRDR  DRDRE+YR+RERDR
Sbjct: 301 DRERSRDRDYDRERSRDRDYDRERSRDRDYDRDRDRGRDRDRDRELDRDREKYRDRERDR 360

Query: 361 DRDREREKGRGRDRERERDRERSYDYDRRTHYAD--SRRDYKRSSRDSVTRHYRRSRSRS 420
           DR  EREK R R+R+RERDRERSYDYDRRTHY+D  SRRD++RSSRD  TRHYRRSRSRS
Sbjct: 361 DR--EREKARDRERDRERDRERSYDYDRRTHYSDRESRRDFERSSRDGGTRHYRRSRSRS 420

Query: 421 RSRSRSQSLLQTGNDGYHKREASPVRGGTTEKTSI---NLAKLKDIYGDVREEKGDLSKE 461
           RSRSR +SL QT    +H+RE SP RGGTTEK S+   NLAKLKDIYGDV E+KGD SK 
Sbjct: 421 RSRSRGRSL-QT----HHEREQSPARGGTTEKASVISSNLAKLKDIYGDVSEQKGDSSKI 468

[Close]

BLAST of Cp4.1LG01g19710 vs. TAIR 10
Match: AT5G37370.1 (PRP38 family protein )

HSP 1 Score: 437.6 bits (1124), Expect = 1.3e-122
Identity = 277/466 (59.44%), Postives = 321/466 (68.88%), Query Frame = 0


Query: 2   EIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTFHEVVDEIYNQVDHVEPWMTGNCRG 61
           EI++ G+A +SLLEKVL MNILSSDYFKELY LKT+HEV+DEIYNQV+HVEPWM GNCRG
Sbjct: 3   EIQSNGRAYESLLEKVLSMNILSSDYFKELYGLKTYHEVIDEIYNQVNHVEPWMGGNCRG 62

Query: 62  PSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVKD 121
           PSTA+CLLYKFFTMKLTVKQMHGLLKH DSPYIRA+GFLYLRYVAD KTLW W+EPY+KD
Sbjct: 63  PSTAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYLRYVADAKTLWTWYEPYIKD 122

Query: 122 EEEFSPESHGRMTTMGVYVRDLLLGQSRRLSLRDEEVQKRSGKEELPDNYYFDTLFPRIP 181
           +EEFSP S+GRMTTMGVYVRDLLLG                        YYFDTLFPRIP
Sbjct: 123 DEEFSPGSNGRMTTMGVYVRDLLLGL-----------------------YYFDTLFPRIP 182

Query: 182 VSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAST 241
           V V+RQ+ +NLEK+ LP+K SG TG+  R GSEDTARRPPSVKASLSVSFGQRAPHRAST
Sbjct: 183 VPVMRQIVSNLEKMNLPTKPSGSTGDMTR-GSEDTARRPPSVKASLSVSFGQRAPHRAST 242

Query: 242 RDSSPVRCTLPPSVSDRDNKDDLQRSPSSRHPDNRERSRDRDHDRERSSDRDHGRKRSRD 301
           R SSPVR   PP+  DR+  D++Q           +RS  R   R+  SDR         
Sbjct: 243 RGSSPVR-RPPPTGYDRNGGDEVQ-----------QRSPRRSQSRDYYSDR--------- 302

Query: 302 SRGKDRDRDRDRDRERYRNRERDRDRDREREKGRGRDRERERDRERSYDYDRRTHYADSR 361
               D DR R+R+RE+ R RER RDR RERE+  G DR   R      DYD R+     R
Sbjct: 303 ----DSDRQREREREKDRERERGRDRYRERERDYGNDRRSRR------DYDSRSR----R 362

Query: 362 RDYKRSSRDSVTRHYRRSRSRSRSRSRSQSLLQTGNDGYHKREASPVRGGTT-EKTSI-- 421
            DY+    D  +RH RRSRSRSRSRSRS  +         +RE +P R  +  EK+++  
Sbjct: 363 NDYE----DDRSRHDRRSRSRSRSRSRSVQI---------EREPTPKRDSSNKEKSAVTV 393

Query: 422 --NLAKLKDIYGDVREEKGDLSKERFNNRRDSSGEEVIRLGG-SWK 462
             NLAKLKD+YGD   +K D   E F  R+DSS EEVI+LGG SW+
Sbjct: 423 NSNLAKLKDLYGDASSQKRD---EGFGTRKDSSSEEVIKLGGSSWR 393

[Close]

BLAST of Cp4.1LG01g19710 vs. TAIR 10
Match: AT5G37370.2 (PRP38 family protein )

HSP 1 Score: 422.5 bits (1085), Expect = 4.2e-118
Identity = 270/466 (57.94%), Postives = 314/466 (67.38%), Query Frame = 0


Query: 2   EIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTFHEVVDEIYNQVDHVEPWMTGNCRG 61
           EI++ G+A +SLLEKVL MNILSSDYFKELY LKT+HEV+DEIYNQV+HVEPWM GNCRG
Sbjct: 3   EIQSNGRAYESLLEKVLSMNILSSDYFKELYGLKTYHEVIDEIYNQVNHVEPWMGGNCRG 62

Query: 62  PSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNWFEPYVKD 121
           PSTA+CLLYKFFTMKLTVKQMHGLLKH DSPYIRA+GFLYLRYVAD KTLW W+EPY+KD
Sbjct: 63  PSTAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYLRYVADAKTLWTWYEPYIKD 122

Query: 122 EEEFSPESHGRMTTMGVYVRDLLLGQSRRLSLRDEEVQKRSGKEELPDNYYFDTLFPRIP 181
           +EEFSP S+GRMTTMGVY                               YYFDTLFPRIP
Sbjct: 123 DEEFSPGSNGRMTTMGVY-------------------------------YYFDTLFPRIP 182

Query: 182 VSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQRAPHRAST 241
           V V+RQ+ +NLEK+ LP+K SG TG+  R GSEDTARRPPSVKASLSVSFGQRAPHRAST
Sbjct: 183 VPVMRQIVSNLEKMNLPTKPSGSTGDMTR-GSEDTARRPPSVKASLSVSFGQRAPHRAST 242

Query: 242 RDSSPVRCTLPPSVSDRDNKDDLQRSPSSRHPDNRERSRDRDHDRERSSDRDHGRKRSRD 301
           R SSPVR   PP+  DR+  D++Q           +RS  R   R+  SDR         
Sbjct: 243 RGSSPVR-RPPPTGYDRNGGDEVQ-----------QRSPRRSQSRDYYSDR--------- 302

Query: 302 SRGKDRDRDRDRDRERYRNRERDRDRDREREKGRGRDRERERDRERSYDYDRRTHYADSR 361
               D DR R+R+RE+ R RER RDR RERE+  G DR   R      DYD R+     R
Sbjct: 303 ----DSDRQREREREKDRERERGRDRYRERERDYGNDRRSRR------DYDSRSR----R 362

Query: 362 RDYKRSSRDSVTRHYRRSRSRSRSRSRSQSLLQTGNDGYHKREASPVRGGTT-EKTSI-- 421
            DY+    D  +RH RRSRSRSRSRSRS  +         +RE +P R  +  EK+++  
Sbjct: 363 NDYE----DDRSRHDRRSRSRSRSRSRSVQI---------EREPTPKRDSSNKEKSAVTV 385

Query: 422 --NLAKLKDIYGDVREEKGDLSKERFNNRRDSSGEEVIRLGG-SWK 462
             NLAKLKD+YGD   +K D   E F  R+DSS EEVI+LGG SW+
Sbjct: 423 NSNLAKLKDLYGDASSQKRD---EGFGTRKDSSSEEVIKLGGSSWR 385

[Close]

BLAST of Cp4.1LG01g19710 vs. TAIR 10
Match: AT5G37370.4 (PRP38 family protein )

HSP 1 Score: 350.5 bits (898), Expect = 2.0e-96
Identity = 235/413 (56.90%), Postives = 272/413 (65.86%), Query Frame = 0


Query: 55  MTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADTKTLWNW 114
           M GNCRGPSTA+CLLYKFFTMKLTVKQMHGLLKH DSPYIRA+GFLYLRYVAD KTLW W
Sbjct: 1   MGGNCRGPSTAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYLRYVADAKTLWTW 60

Query: 115 FEPYVKDEEEFSPESHGRMTTMGVYVRDLLLGQSRRLSLRDEEVQKRSGKEELPDNYYFD 174
           +EPY+KD+EEFSP S+GRMTTMGVYVRDLLLG                        YYFD
Sbjct: 61  YEPYIKDDEEFSPGSNGRMTTMGVYVRDLLLGL-----------------------YYFD 120

Query: 175 TLFPRIPVSVLRQVAANLEKLKLPSKHSGVTGETHRIGSEDTARRPPSVKASLSVSFGQR 234
           TLFPRIPV V+RQ+ +NLEK+ LP+K SG TG+  R GSEDTARRPPSVKASLSVSFGQR
Sbjct: 121 TLFPRIPVPVMRQIVSNLEKMNLPTKPSGSTGDMTR-GSEDTARRPPSVKASLSVSFGQR 180

Query: 235 APHRASTRDSSPVRCTLPPSVSDRDNKDDLQRSPSSRHPDNRERSRDRDHDRERSSDRDH 294
           APHRASTR SSPVR   PP+  DR+  D++Q           +RS  R   R+  SDR  
Sbjct: 181 APHRASTRGSSPVR-RPPPTGYDRNGGDEVQ-----------QRSPRRSQSRDYYSDR-- 240

Query: 295 GRKRSRDSRGKDRDRDRDRDRERYRNRERDRDRDREREKGRGRDRERERDRERSYDYDRR 354
                      D DR R+R+RE+ R RER RDR RERE+  G DR   R      DYD R
Sbjct: 241 -----------DSDRQREREREKDRERERGRDRYRERERDYGNDRRSRR------DYDSR 300

Query: 355 THYADSRRDYKRSSRDSVTRHYRRSRSRSRSRSRSQSLLQTGNDGYHKREASPVRGGTT- 414
           +     R DY+    D  +RH RRSRSRSRSRSRS  +         +RE +P R  +  
Sbjct: 301 SR----RNDYE----DDRSRHDRRSRSRSRSRSRSVQI---------EREPTPKRDSSNK 338

Query: 415 EKTSI----NLAKLKDIYGDVREEKGDLSKERFNNRRDSSGEEVIRLGG-SWK 462
           EK+++    NLAKLKD+YGD   +K D   E F  R+DSS EEVI+LGG SW+
Sbjct: 361 EKSAVTVNSNLAKLKDLYGDASSQKRD---EGFGTRKDSSSEEVIKLGGSSWR 338

[Close]

BLAST of Cp4.1LG01g19710 vs. TAIR 10
Match: AT5G37370.3 (PRP38 family protein )

HSP 1 Score: 177.2 bits (448), Expect = 3.1e-44
Identity = 82/96 (85.42%), Postives = 90/96 (93.75%), Query Frame = 0


Query: 2  EIKTCGKAIDSLLEKVLCMNILSSDYFKELYRLKTFHEVVDEIYNQVDHVEPWMTGNCRG 61
          EI++ G+A +SLLEKVL MNILSSDYFKELY LKT+HEV+DEIYNQV+HVEPWM GNCRG
Sbjct: 3  EIQSNGRAYESLLEKVLSMNILSSDYFKELYGLKTYHEVIDEIYNQVNHVEPWMGGNCRG 62

Query: 62 PSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAI 98
          PSTA+CLLYKFFTMKLTVKQMHGLLKH DSPYIRAI
Sbjct: 63 PSTAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAI 98

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g19710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWB1	1.8e-121	59.44	Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis thaliana OX=3702 GN=SRL1 PE=1 ...	[more]
Q80SY5	6.7e-44	35.98	Pre-mRNA-splicing factor 38B OS=Mus musculus OX=10090 GN=Prpf38b PE=1 SV=1	[more]
Q6AXY7	1.5e-43	36.29	Pre-mRNA-splicing factor 38B OS=Rattus norvegicus OX=10116 GN=Prpf38b PE=1 SV=1	[more]
Q5VTL8	1.9e-43	37.20	Pre-mRNA-splicing factor 38B OS=Homo sapiens OX=9606 GN=PRPF38B PE=1 SV=1	[more]
Q6P7Y3	2.5e-38	35.23	Pre-mRNA-splicing factor 38B OS=Danio rerio OX=7955 GN=prpf38b PE=2 SV=1	[more]

BLAST of Cp4.1LG01g19710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023548529.1	1.17e-298	95.01	pre-mRNA splicing factor SR-like 1 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022955756.1	7.71e-281	90.02	pre-mRNA splicing factor SR-like 1 isoform X1 [Cucurbita moschata]	[more]
KAG7032708.1	3.64e-280	89.87	Pre-mRNA splicing factor SR-like 1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038875168.1	1.29e-241	80.67	pre-mRNA splicing factor SR-like 1 isoform X1 [Benincasa hispida] >XP_038875169....	[more]
XP_022993767.1	3.44e-238	79.71	pre-mRNA splicing factor SR-like 1 [Cucurbita maxima]	[more]

BLAST of Cp4.1LG01g19710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GUQ9	3.73e-281	90.02	Pre-mRNA-splicing factor 38 OS=Cucurbita moschata OX=3662 GN=LOC111457654 PE=3 S...	[more]
A0A6J1JTS5	1.67e-238	79.71	Pre-mRNA-splicing factor 38 OS=Cucurbita maxima OX=3661 GN=LOC111489677 PE=3 SV=...	[more]
A0A6J1CK04	2.13e-235	78.07	Pre-mRNA-splicing factor 38 OS=Momordica charantia OX=3673 GN=LOC111011867 PE=3 ...	[more]
A0A6J1FF63	3.38e-234	77.96	Pre-mRNA-splicing factor 38 OS=Cucurbita moschata OX=3662 GN=LOC111444923 PE=3 S...	[more]
A0A5D3D5T6	2.05e-232	75.85	Pre-mRNA-splicing factor 38 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of Cp4.1LG01g19710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G37370.1	1.3e-122	59.44	PRP38 family protein	[more]
AT5G37370.2	4.2e-118	57.94	PRP38 family protein	[more]
AT5G37370.4	2.0e-96	56.90	PRP38 family protein	[more]
AT5G37370.3	3.1e-44	85.42	PRP38 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005037	Pre-mRNA-splicing factor 38	PFAM	PF03371	PRP38	coord: 11..146 e-value: 1.2E-45 score: 155.6
IPR005037	Pre-mRNA-splicing factor 38	PANTHER	PTHR23142	UNCHARACTERIZED	coord: 306..459 coord: 164..324
IPR005037	Pre-mRNA-splicing factor 38	PANTHER	PTHR23142	UNCHARACTERIZED	coord: 1..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 226..251
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 200..416
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 371..385
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 428..452
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 255..370
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 428..461
None	No IPR available	PANTHER	PTHR23142:SF3	PRP38 FAMILY PROTEIN	coord: 306..459 coord: 164..324
None	No IPR available	PANTHER	PTHR23142:SF3	PRP38 FAMILY PROTEIN	coord: 1..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g19710.1	Cp4.1LG01g19710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0071011	precatalytic spliceosome