Cp4.1LG01g17600 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g17600
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	zinc finger protein WIP6-like
Location	Cp4.1LG01: 13483454 .. 13483843 (+)
RNA-Seq Expression	Cp4.1LG01g17600
Synteny	Cp4.1LG01g17600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTACGACTTCCATGCTATTGCTGTGCAGAAGGGTGCAAAAACAACATAGAGCATCCAAGGTCAAGGCCATTGAAAGACTTCAGGACTCTTCAGACCCATTACAAGAGAAAGCATGGAGCAAAGCCTTTCAGTTGTAGGAAATGTGGGAAGCCCTTTGCAGTCCGAGGGGATTGGAGGACACATGAGAAGAACTGTGGAAAGCTTTGGTTTTGCATTTGTGGGTCTGATTTTAAGCACAAAAGATCCCTTAAAGACCATGTTCGAGCCTTTGGAGATGGGCATGCACCTCATACGGTCCAACTTTGTGAGGTTGAAGATGATGATTGGGATGATAATGATGATCATGAACATGTAAATGGATCTCAACCCTGGTCAATTTATCATTAA

mRNA sequence

ATGCTACGACTTCCATGCTATTGCTGTGCAGAAGGGTGCAAAAACAACATAGAGCATCCAAGGTCAAGGCCATTGAAAGACTTCAGGACTCTTCAGACCCATTACAAGAGAAAGCATGGAGCAAAGCCTTTCAGTTGTAGGAAATGTGGGAAGCCCTTTGCAGTCCGAGGGGATTGGAGGACACATGAGAAGAACTGTGGAAAGCTTTGGTTTTGCATTTGTGGGTCTGATTTTAAGCACAAAAGATCCCTTAAAGACCATGTTCGAGCCTTTGGAGATGGGCATGCACCTCATACGGTCCAACTTTGTGAGGTTGAAGATGATGATTGGGATGATAATGATGATCATGAACATGTAAATGGATCTCAACCCTGGTCAATTTATCATTAA

Coding sequence (CDS)

ATGCTACGACTTCCATGCTATTGCTGTGCAGAAGGGTGCAAAAACAACATAGAGCATCCAAGGTCAAGGCCATTGAAAGACTTCAGGACTCTTCAGACCCATTACAAGAGAAAGCATGGAGCAAAGCCTTTCAGTTGTAGGAAATGTGGGAAGCCCTTTGCAGTCCGAGGGGATTGGAGGACACATGAGAAGAACTGTGGAAAGCTTTGGTTTTGCATTTGTGGGTCTGATTTTAAGCACAAAAGATCCCTTAAAGACCATGTTCGAGCCTTTGGAGATGGGCATGCACCTCATACGGTCCAACTTTGTGAGGTTGAAGATGATGATTGGGATGATAATGATGATCATGAACATGTAAATGGATCTCAACCCTGGTCAATTTATCATTAA

Protein sequence

MLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDDNDDHEHVNGSQPWSIYH

Homology

[Close]

BLAST of Cp4.1LG01g17600 vs. ExPASy Swiss-Prot
Match: Q9FX68 (Zinc finger protein WIP6 OS=Arabidopsis thaliana OX=3702 GN=WIP6 PE=2 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.4e-55
Identity = 97/120 (80.83%), Postives = 106/120 (88.33%), Query Frame = 0


Query: 1   MLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCR-KCGKPFAVRGDW 60
           +LRLPCYCCAEGCKNNI+HPRS+PLKDFRTLQTHYKRKHGAKPF CR KC K FAVRGDW
Sbjct: 143 ILRLPCYCCAEGCKNNIDHPRSKPLKDFRTLQTHYKRKHGAKPFRCRKKCEKTFAVRGDW 202

Query: 61  RTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTV--QLCEVEDDDWDDNDDHE 118
           RTHEKNCGKLWFC+CGSDFKHKRSLKDHVRAFGDGHA HTV  ++  + D D DD ++ E
Sbjct: 203 RTHEKNCGKLWFCVCGSDFKHKRSLKDHVRAFGDGHAAHTVSDRVVGIGDADEDDEEEEE 262

[Close]

BLAST of Cp4.1LG01g17600 vs. ExPASy Swiss-Prot
Match: Q9SGD1 (Zinc finger protein WIP3 OS=Arabidopsis thaliana OX=3702 GN=WIP3 PE=2 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.1e-52
Identity = 86/109 (78.90%), Postives = 97/109 (88.99%), Query Frame = 0


Query: 1   MLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWR 60
           +LRLPCYCCAEGCKNNI HPRS+PLKDFRTLQTHYKRKHG+KPFSC KCGK  AV+GDWR
Sbjct: 222 ILRLPCYCCAEGCKNNINHPRSKPLKDFRTLQTHYKRKHGSKPFSCGKCGKALAVKGDWR 281

Query: 61  THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDD 110
           THEKNCGKLW+C CGSDFKHKRSLKDH+R+FG GH+PH   L +  ++D
Sbjct: 282 THEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGSGHSPHPSLLFDGFEED 330

[Close]

BLAST of Cp4.1LG01g17600 vs. ExPASy Swiss-Prot
Match: Q9SVY1 (Zinc finger protein WIP2 OS=Arabidopsis thaliana OX=3702 GN=WIP2 PE=1 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.4e-52
Identity = 88/121 (72.73%), Postives = 103/121 (85.12%), Query Frame = 0


Query: 1   MLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWR 60
           MLRLPCYCCA GC+NNI+HPR++PLKDFRTLQTHYKRKHG KPF CRKCGK FAVRGDWR
Sbjct: 258 MLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWR 317

Query: 61  THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDD----NDDH 118
           THEKNCGKLW+CICGSDFKHKRSLKDH++AFG+GH  + +   + ED+   +    ++DH
Sbjct: 318 THEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHGAYGIDGFDEEDEPASEVEQLDNDH 377

[Close]

BLAST of Cp4.1LG01g17600 vs. ExPASy Swiss-Prot
Match: Q8W031 (Zinc finger protein WIP5 OS=Arabidopsis thaliana OX=3702 GN=WIP5 PE=2 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 3.5e-51
Identity = 84/112 (75.00%), Postives = 98/112 (87.50%), Query Frame = 0


Query: 1   MLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWR 60
           MLRLPC+CCA GCKNNI+HPR++PLKDFRTLQTHYKRKHG+KPF+CR CGK FAV+GDWR
Sbjct: 219 MLRLPCFCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGSKPFACRMCGKAFAVKGDWR 278

Query: 61  THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDD 113
           THEKNCGKLW+C CGSDFKHKRSLKDHV+AFG+GH P  +     + +D+ D
Sbjct: 279 THEKNCGKLWYCSCGSDFKHKRSLKDHVKAFGNGHVPCGIDSFGGDHEDYYD 330

[Close]

BLAST of Cp4.1LG01g17600 vs. ExPASy Swiss-Prot
Match: Q8W030 (Zinc finger protein WIP4 OS=Arabidopsis thaliana OX=3702 GN=WIP4 PE=2 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 6.0e-51
Identity = 85/117 (72.65%), Postives = 100/117 (85.47%), Query Frame = 0


Query: 1   MLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWR 60
           ML+LPCYCCA GCKNNI+HPR+RPLKDFRTLQTHYKRKHG +PF+CR+CGK FAV+GDWR
Sbjct: 297 MLKLPCYCCAPGCKNNIDHPRARPLKDFRTLQTHYKRKHGVRPFACRRCGKAFAVKGDWR 356

Query: 61  THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDDNDDHE 118
           THEKNCGKLW+C CGSDFKHKRSLKDHV+AFG+GH P     C ++ ++ +   D E
Sbjct: 357 THEKNCGKLWYCSCGSDFKHKRSLKDHVKAFGNGHVP----CCGIDHEEEEAASDVE 409

[Close]

BLAST of Cp4.1LG01g17600 vs. NCBI nr
Match: XP_023546764.1 (zinc finger protein WIP6-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023546773.1 zinc finger protein WIP6-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 297 bits (760), Expect = 1.27e-99
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWR 60
           MLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWR
Sbjct: 167 MLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWR 226

Query: 61  THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDDNDDHEHVN 120
           THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDDNDDHEHVN
Sbjct: 227 THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDDNDDHEHVN 286

Query: 121 GSQPWSIYH 129
           GSQPWSIYH
Sbjct: 287 GSQPWSIYH 295

[Close]

BLAST of Cp4.1LG01g17600 vs. NCBI nr
Match: KAG6601746.1 (Zinc finger protein WIP6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 296 bits (757), Expect = 3.17e-99
Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWR 60
           MLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWR
Sbjct: 163 MLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWR 222

Query: 61  THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDDNDDHEHVN 120
           THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDDNDDHEHVN
Sbjct: 223 THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDDNDDHEHVN 282

Query: 121 GSQPWSIYH 129
           G+QPWSIYH
Sbjct: 283 GAQPWSIYH 291

[Close]

BLAST of Cp4.1LG01g17600 vs. NCBI nr
Match: XP_022973621.1 (zinc finger protein WIP6-like [Cucurbita maxima])

HSP 1 Score: 296 bits (757), Expect = 3.28e-99
Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWR 60
           MLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWR
Sbjct: 164 MLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWR 223

Query: 61  THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDDNDDHEHVN 120
           THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDDNDDHEHVN
Sbjct: 224 THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDDNDDHEHVN 283

Query: 121 GSQPWSIYH 129
           G+QPWSIYH
Sbjct: 284 GAQPWSIYH 292

[Close]

BLAST of Cp4.1LG01g17600 vs. NCBI nr
Match: XP_022930100.1 (zinc finger protein WIP6-like [Cucurbita moschata])

HSP 1 Score: 296 bits (757), Expect = 3.28e-99
Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWR 60
           MLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWR
Sbjct: 164 MLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWR 223

Query: 61  THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDDNDDHEHVN 120
           THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDDNDDHEHVN
Sbjct: 224 THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDDNDDHEHVN 283

Query: 121 GSQPWSIYH 129
           G+QPWSIYH
Sbjct: 284 GAQPWSIYH 292

[Close]

BLAST of Cp4.1LG01g17600 vs. NCBI nr
Match: XP_038875923.1 (zinc finger protein WIP6-like [Benincasa hispida])

HSP 1 Score: 279 bits (713), Expect = 1.01e-92
Identity = 125/132 (94.70%), Postives = 127/132 (96.21%), Query Frame = 0


Query: 1   MLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWR 60
           MLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWR
Sbjct: 147 MLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWR 206

Query: 61  THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDD-WDDNDD--HE 120
           THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDD WDD+DD  H+
Sbjct: 207 THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDDWDDHDDTDHQ 266

Query: 121 HVNGSQPWSIYH 129
           HVNG Q WSIYH
Sbjct: 267 HVNGPQGWSIYH 278

[Close]

BLAST of Cp4.1LG01g17600 vs. ExPASy TrEMBL
Match: A0A6J1I950 (zinc finger protein WIP6-like OS=Cucurbita maxima OX=3661 GN=LOC111472204 PE=3 SV=1)

HSP 1 Score: 296 bits (757), Expect = 1.59e-99
Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWR 60
           MLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWR
Sbjct: 164 MLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWR 223

Query: 61  THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDDNDDHEHVN 120
           THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDDNDDHEHVN
Sbjct: 224 THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDDNDDHEHVN 283

Query: 121 GSQPWSIYH 129
           G+QPWSIYH
Sbjct: 284 GAQPWSIYH 292

[Close]

BLAST of Cp4.1LG01g17600 vs. ExPASy TrEMBL
Match: A0A6J1EW22 (zinc finger protein WIP6-like OS=Cucurbita moschata OX=3662 GN=LOC111436584 PE=3 SV=1)

HSP 1 Score: 296 bits (757), Expect = 1.59e-99
Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWR 60
           MLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWR
Sbjct: 164 MLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWR 223

Query: 61  THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDDNDDHEHVN 120
           THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDDNDDHEHVN
Sbjct: 224 THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDDNDDHEHVN 283

Query: 121 GSQPWSIYH 129
           G+QPWSIYH
Sbjct: 284 GAQPWSIYH 292

[Close]

BLAST of Cp4.1LG01g17600 vs. ExPASy TrEMBL
Match: A0A6J1DR05 (zinc finger protein WIP6 OS=Momordica charantia OX=3673 GN=LOC111022346 PE=3 SV=1)

HSP 1 Score: 263 bits (672), Expect = 1.24e-86
Identity = 119/146 (81.51%), Postives = 124/146 (84.93%), Query Frame = 0


Query: 1   MLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWR 60
           MLRLPCYCCAEGC+NNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWR
Sbjct: 145 MLRLPCYCCAEGCRNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWR 204

Query: 61  THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDDNDD----- 120
           THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQ+CEV+DDD DD DD     
Sbjct: 205 THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQVCEVDDDDEDDVDDDWDID 264

Query: 121 ------------HEHVNGSQPWSIYH 129
                       H+ VNG Q WSI+H
Sbjct: 265 KNNNDNNDILHHHQRVNGGQGWSIFH 290

[Close]

BLAST of Cp4.1LG01g17600 vs. ExPASy TrEMBL
Match: A0A5A7VHR3 (Zinc finger protein WIP6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119G00270 PE=3 SV=1)

HSP 1 Score: 262 bits (669), Expect = 3.42e-86
Identity = 119/135 (88.15%), Postives = 125/135 (92.59%), Query Frame = 0


Query: 1   MLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWR 60
           MLR+PCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGK FAVRGDWR
Sbjct: 155 MLRVPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKSFAVRGDWR 214

Query: 61  THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDD----DWD-DNDD 120
           THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDD    +W+ D+  
Sbjct: 215 THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDNDDDEWESDHHH 274

Query: 121 HEHVNGS-QPWSIYH 129
           H+H+NGS Q WSIYH
Sbjct: 275 HQHLNGSPQTWSIYH 289

[Close]

BLAST of Cp4.1LG01g17600 vs. ExPASy TrEMBL
Match: A0A1S3CR84 (zinc finger protein WIP6-like OS=Cucumis melo OX=3656 GN=LOC103503431 PE=3 SV=1)

HSP 1 Score: 262 bits (669), Expect = 3.42e-86
Identity = 119/135 (88.15%), Postives = 125/135 (92.59%), Query Frame = 0


Query: 1   MLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWR 60
           MLR+PCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGK FAVRGDWR
Sbjct: 155 MLRVPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKSFAVRGDWR 214

Query: 61  THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDD----DWD-DNDD 120
           THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDD    +W+ D+  
Sbjct: 215 THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDNDDDEWESDHHH 274

Query: 121 HEHVNGS-QPWSIYH 129
           H+H+NGS Q WSIYH
Sbjct: 275 HQHLNGSPQTWSIYH 289

[Close]

BLAST of Cp4.1LG01g17600 vs. TAIR 10
Match: AT1G13290.1 (C2H2-like zinc finger protein )

HSP 1 Score: 216.1 bits (549), Expect = 1.7e-56
Identity = 97/120 (80.83%), Postives = 106/120 (88.33%), Query Frame = 0


Query: 1   MLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCR-KCGKPFAVRGDW 60
           +LRLPCYCCAEGCKNNI+HPRS+PLKDFRTLQTHYKRKHGAKPF CR KC K FAVRGDW
Sbjct: 143 ILRLPCYCCAEGCKNNIDHPRSKPLKDFRTLQTHYKRKHGAKPFRCRKKCEKTFAVRGDW 202

Query: 61  RTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTV--QLCEVEDDDWDDNDDHE 118
           RTHEKNCGKLWFC+CGSDFKHKRSLKDHVRAFGDGHA HTV  ++  + D D DD ++ E
Sbjct: 203 RTHEKNCGKLWFCVCGSDFKHKRSLKDHVRAFGDGHAAHTVSDRVVGIGDADEDDEEEEE 262

[Close]

BLAST of Cp4.1LG01g17600 vs. TAIR 10
Match: AT1G08290.1 (WIP domain protein 3 )

HSP 1 Score: 207.2 bits (526), Expect = 7.8e-54
Identity = 86/109 (78.90%), Postives = 97/109 (88.99%), Query Frame = 0


Query: 1   MLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWR 60
           +LRLPCYCCAEGCKNNI HPRS+PLKDFRTLQTHYKRKHG+KPFSC KCGK  AV+GDWR
Sbjct: 222 ILRLPCYCCAEGCKNNINHPRSKPLKDFRTLQTHYKRKHGSKPFSCGKCGKALAVKGDWR 281

Query: 61  THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDD 110
           THEKNCGKLW+C CGSDFKHKRSLKDH+R+FG GH+PH   L +  ++D
Sbjct: 282 THEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGSGHSPHPSLLFDGFEED 330

[Close]

BLAST of Cp4.1LG01g17600 vs. TAIR 10
Match: AT3G57670.1 (C2H2-type zinc finger family protein )

HSP 1 Score: 206.1 bits (523), Expect = 1.7e-53
Identity = 88/121 (72.73%), Postives = 103/121 (85.12%), Query Frame = 0


Query: 1   MLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWR 60
           MLRLPCYCCA GC+NNI+HPR++PLKDFRTLQTHYKRKHG KPF CRKCGK FAVRGDWR
Sbjct: 258 MLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWR 317

Query: 61  THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDD----NDDH 118
           THEKNCGKLW+CICGSDFKHKRSLKDH++AFG+GH  + +   + ED+   +    ++DH
Sbjct: 318 THEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHGAYGIDGFDEEDEPASEVEQLDNDH 377

[Close]

BLAST of Cp4.1LG01g17600 vs. TAIR 10
Match: AT1G51220.1 (WIP domain protein 5 )

HSP 1 Score: 202.2 bits (513), Expect = 2.5e-52
Identity = 84/112 (75.00%), Postives = 98/112 (87.50%), Query Frame = 0


Query: 1   MLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWR 60
           MLRLPC+CCA GCKNNI+HPR++PLKDFRTLQTHYKRKHG+KPF+CR CGK FAV+GDWR
Sbjct: 219 MLRLPCFCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGSKPFACRMCGKAFAVKGDWR 278

Query: 61  THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDD 113
           THEKNCGKLW+C CGSDFKHKRSLKDHV+AFG+GH P  +     + +D+ D
Sbjct: 279 THEKNCGKLWYCSCGSDFKHKRSLKDHVKAFGNGHVPCGIDSFGGDHEDYYD 330

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BLAST of Cp4.1LG01g17600 vs. TAIR 10
Match: AT3G20880.1 (WIP domain protein 4 )

HSP 1 Score: 201.4 bits (511), Expect = 4.3e-52
Identity = 85/117 (72.65%), Postives = 100/117 (85.47%), Query Frame = 0


Query: 1   MLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWR 60
           ML+LPCYCCA GCKNNI+HPR+RPLKDFRTLQTHYKRKHG +PF+CR+CGK FAV+GDWR
Sbjct: 297 MLKLPCYCCAPGCKNNIDHPRARPLKDFRTLQTHYKRKHGVRPFACRRCGKAFAVKGDWR 356

Query: 61  THEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDWDDNDDHE 118
           THEKNCGKLW+C CGSDFKHKRSLKDHV+AFG+GH P     C ++ ++ +   D E
Sbjct: 357 THEKNCGKLWYCSCGSDFKHKRSLKDHVKAFGNGHVP----CCGIDHEEEEAASDVE 409

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g17600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FX68	2.4e-55	80.83	Zinc finger protein WIP6 OS=Arabidopsis thaliana OX=3702 GN=WIP6 PE=2 SV=1	[more]
Q9SGD1	1.1e-52	78.90	Zinc finger protein WIP3 OS=Arabidopsis thaliana OX=3702 GN=WIP3 PE=2 SV=1	[more]
Q9SVY1	2.4e-52	72.73	Zinc finger protein WIP2 OS=Arabidopsis thaliana OX=3702 GN=WIP2 PE=1 SV=1	[more]
Q8W031	3.5e-51	75.00	Zinc finger protein WIP5 OS=Arabidopsis thaliana OX=3702 GN=WIP5 PE=2 SV=1	[more]
Q8W030	6.0e-51	72.65	Zinc finger protein WIP4 OS=Arabidopsis thaliana OX=3702 GN=WIP4 PE=2 SV=1	[more]

BLAST of Cp4.1LG01g17600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023546764.1	1.27e-99	100.00	zinc finger protein WIP6-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023546...	[more]
KAG6601746.1	3.17e-99	99.22	Zinc finger protein WIP6, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022973621.1	3.28e-99	99.22	zinc finger protein WIP6-like [Cucurbita maxima]	[more]
XP_022930100.1	3.28e-99	99.22	zinc finger protein WIP6-like [Cucurbita moschata]	[more]
XP_038875923.1	1.01e-92	94.70	zinc finger protein WIP6-like [Benincasa hispida]	[more]

BLAST of Cp4.1LG01g17600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I950	1.59e-99	99.22	zinc finger protein WIP6-like OS=Cucurbita maxima OX=3661 GN=LOC111472204 PE=3 S...	[more]
A0A6J1EW22	1.59e-99	99.22	zinc finger protein WIP6-like OS=Cucurbita moschata OX=3662 GN=LOC111436584 PE=3...	[more]
A0A6J1DR05	1.24e-86	81.51	zinc finger protein WIP6 OS=Momordica charantia OX=3673 GN=LOC111022346 PE=3 SV=...	[more]
A0A5A7VHR3	3.42e-86	88.15	Zinc finger protein WIP6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3CR84	3.42e-86	88.15	zinc finger protein WIP6-like OS=Cucumis melo OX=3656 GN=LOC103503431 PE=3 SV=1	[more]

BLAST of Cp4.1LG01g17600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G13290.1	1.7e-56	80.83	C2H2-like zinc finger protein	[more]
AT1G08290.1	7.8e-54	78.90	WIP domain protein 3	[more]
AT3G57670.1	1.7e-53	72.73	C2H2-type zinc finger family protein	[more]
AT1G51220.1	2.5e-52	75.00	WIP domain protein 5	[more]
AT3G20880.1	4.3e-52	72.65	WIP domain protein 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 3..90 e-value: 2.4E-6 score: 29.6
None	No IPR available	PANTHER	PTHR45878:SF25	ZINC FINGER PROTEIN WIP6	coord: 1..118
IPR043584	Zinc finger protein WIP	PANTHER	PTHR45878	ZINC FINGER PROTEIN WIP2	coord: 1..118
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 30..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g17600.1	Cp4.1LG01g17600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048856	anatomical structure development
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0010468	regulation of gene expression
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity