Cp4.1LG01g14720 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g14720
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	glycine-rich RNA-binding protein RZ1C-like isoform X1
Location	Cp4.1LG01: 7499637 .. 7504925 (+)
RNA-Seq Expression	Cp4.1LG01g14720
Synteny	Cp4.1LG01g14720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGGGAGAGAGGAGTACCGAATATTTGTGGGAGGATTGTCGTGGGACATCACGGAGCGTCTGCTTGAGAATGCCTTCAGTCGATTCGGCAAAATTATCGATTCTCAGGTTACCATTTTTATGTATGTTAGTTGATTTGTGGTTTGATCTGTATGGCTGAAAACTGGAGCAATTGGACTTCGTTTTAACCTAACACGTTGGAATAAGAAATCCATTTGTTTCTTATATGAGAAGAAAATAGATTAGATTGGTATCATTCTGGTTCATTGTTCATATGGAGAATATAATTTCTCAAATTCCACTCCCTTCCCTCTAATTAACATTTCCCTCTGATGATAGCATGAAAAATAGAAAAAACCACAGATGAATTGCAAGATTAACTTTTATCATCGAAAGCCATAATTTTGTGTTTTTTCTGCATTGGTTTGTGGCACCTGTAATTTTTCAACAACCTCTTCTCTTTCTGATGATGTTTTTTTTGCCCTTGTGAATGAGGATGCTGTTAATGAACTTTTTGGGAAGCGGTTTCTCTATCCACGTAAGAATGCACCAAGATGCTGGTCATAGGCTTGTATGTGCTTAACTATTATCTGATTTAAGATCTGCTAGCAAAGAAAAAGTGCTACTGTCTGGAAATTGGGAATATGGTCGCCTGCCTAGCTGATTGGGGTTTGGTAGGATTTTAATACGCAAATTCAGCGACTAATTGTTTCTGTGGGTTAAAAGAACTTGTCACTTTTTCGCGACAGATAAATGATTTAAAACCGGAGGAACTCTTAACAAGTGCTGTGCTGATGCCTGCTTCAGCAGACCTTTATTGTTTTATTGTTCGTTGATGTTTTTGATGACGAAACTGAAGTCGCTAAAATGTTTCAGCATCTGACTAATAAACGTTCTAGTATTTGCTCGGAGAATTTTATCTTGCTTGGGATGATTATGAAACCGTATCTTATCCTTGGCTTACCGCACTTACCAATAGTATGACTAAAATTTATGATGAAGGTTATGTGGTTATATGAGATGATGTACATGGGGCAGAAGGTTTGGGATAGATTGCCATATTGACTCAGATAATGAGTTTGCTAAGTCCTCTAATCTCAGAAAATCTTCAGAAGCTGTATGTTATTGGATGGAAAGTTATGTTGTATGAAGATGGTTTCTTACTAGTGGCTGCTTCTTTGCAATGCTTTCTTCGTTTTCCTATCTATAACTGTAATTATTACCAAAGTGAGAGATAGCCGGTTTTCTCATTTGCTAGTTTCACCGGTGTTGAGAGTTGTCAGTTTGATTCTAAGATGGAGAATACGTAAAAGTGGTGCGTCCTTTTTGGCTAAGATTTATGGTAGTGTGCAAAAGTACAATTTTTGGAAATCAATAACCATTTCATCCTTTTGAGTGGACACTGCATTGTTGAATTTCATTTTGCTGGGATGAAGTTGTCAGAGTCCCTTACTTTCCCAGGCACGCTCCGAAAGTTGTTTGTACTGGTTTCTGTTTAGCAGCTAATGTGGCTAGAATGGCACTAGCGATGCCAGGCTTAGCAGCTCAGACATTTTTGTGAAGAATTGGCCAAACTGCATCGGTAGTCTTTAGTTTGACATGTATTCGACATTGTATGATGTCAGCTGAATTGTAAATGTCAGTATGAGGGCCTATTCTGATCAGTTGTCTTCTGTGGCGAGCATGTTAAGATACTATGTGGTGGACAGAACAGTGGACATTGATGTGGATATTTTTGTCATTCAAAGCTTCCAGAGCTCTTAAGGCCCCTGATGTTGGACTCCGTTTTCTGTTATGACCGAGCATTATGAATGTCTGTTTGTTGGGTATAGTACTGGATCGGAGCAATTGGATTTGAAGTTAAATTTGAGTTCCTATAGGTGCAGTGTTGCAGGTTGGGGTTTTTTTTGATGAGCTATTTAGATGAATGGATTTAGGTTGTGGCAACCTGTGAAATTATGGAGCTGTAGTTTTCCATTCATTTGTTTACATCCTTTTCTCGTTGTTTGAAGTTGTTCCTGAAGATTGGTCAAGAATGCTCTGCTATTTTGTTTTCCTTTTTTATGGTGTTGATGTGCTAGTTCCCTCATATTATACTCATTGACAGTCTTTGTCATTCCTTGAATATGAATATGTTCCTAGTTAAGTATGGTTGCCATGCAAGATTTATCGTCATCAAGTTTTCCAGTACAGCCTCTTGTCCACAAACTGAAGGGATCTCAATTACGGAATAAGTTGGCATCTCCATTGCTTGAAATTTTACTGTTTTAGTGAACCTTGCCTTCGTCTCCTAGAGCATTCATCCTGGAAGATGTGTTGTTTTAAGTATTCGTCTTTCTTTTTTGAGATTTATGTCACCATCTCTTTCACATCACATCCTAATATGATTGATCATGTGACCGCTTTGTTGAGGTTAACAAATCCCATAGTTGGAGTAATACACATATCCAGTGAAGTGTTTGTACTGGGTTTTTTTGAGTTAACATTGACTTTGAGTGCCATTTTGGATGCCGGACTGCACAGAAGAAGTCCATGTAGCCACTTTTTTAATGGAATTGTTTCTTTAAATAAAAGGGGACTAGAGAGGTCTAAGAGATTCCCACTTCAGAACATAGAGATAAAGACGTACAGGCTCTTTTGTTTTGTTAAGGAATTATGTAACATGTTGCAATGAGTTCTTCATAAATGGAAGAAAAATGTAAGTTGTCCGACTGTTAGTTATATATTTTAAAACATATTTATGCTGTTATTATCAATTGCTATAAGTTTAAACTTTGAACAACTTCTCTTTGATGTTGTACTTTTTATAGTGTATACCATCACCAGCTTGTACCTAACTTATTCTATTATTCTGCATTCTCTTAATGCAATGTAGGCTTGTAACCATGTTTTATGATAATTTGGAGTTTGAAACCTCCAACTTGTAGGTCATGTCAACTGTATGGTATCGAATTTATACATCTTGACTCTGTCACAATTGTATTTGTGGGCTTCAAGCCCAAGAGTGGGTATAGTATTCCATGCTCTTAGATTAACTCCATGTCTATTAACTCCAAGGTTGTCAACTAGGATCTTAAATACCAAAACAAAGCCTCCTTATATTAGTGGTTAGGCTATAGCCTGTCATCTTTGAATATGAGGTGGGAATTTTGGCTGTTTATTTATCTTTAATTGTGATGGTCTTCATCCCTGTTTCTTTGATGCCGGTTTTAATTGTGATGGTCTTCATCCCTGTTTCTTTGATGCCGGTTTTTGTTACATTAGACAAATTTACTTCATAGTCTAGGTTTAGACTAAGTTTATGGCAGGTAGGTCACTTGTATACATTATTAGTATGAGATGTTCTTTAGCTCTGGTTTAATGACTTGATTTAAGTTATATTGGCTGTTCAATTGATTGGCGTAAACTACCTCTTTGATGTTCCTGTAGATCATGTTGGAAAAGAATACTGGCCGCCCACGTGGCTTTGGGTTTATTACATTTTCAGATCGCCGGGGAATGGATGATGCCATCAGAGAGATGCATGGACGAGAATTTGGAGAACGAATCATTTCAGTGAACAAGGCTGAACCTAAAATGGGAGAAGATATAGACCATGGTTACAGGGGGGGAGGAGATAGATCTGCGAGGCAAGATGAATGCTTCAAATGTGGGCGTCATGGACACTGGGCTAGAGATTGTCCTTCAGTGGGTGGTGGCCGAGGAAGGGGAGGAGACTCATTTCTTACACGTTCTCGGCTTGGAGATAGTGATCGTGGGGATCGCTTTGCTGGAGATAATAATCGATATGTGGATGATCGTTATGAAGGTGGCGGGCGCTTTGGAGATCGGGATCGTTTTGATAACAGCAGGGACAGTAAATATGGAACTCGTGATCGCTATGTCAGTGAAAGGTACTGACTGATATTATTTTCTGTGCATAATATATTCTTAAAATTTTTGCTTTAAAGTAATGTTCACTAGGAATTGATAAATGGGCAGAATGGAGATCCTATGTCATTTCTTTTGCTGATTAATCTGAGTCACTGCTCAATTATTTCCTTGCACCATCATATAGTTGATCCATCCTTGCATTCCTGATCTTATATGTAAATCTGCAGATACCCACCTGGTGGAGATCGCTTTGGTAGCAGTAGGTACAATAACGATTCTGATCGATTTCCCACAAATGGCTATGGCAAAGATAGGGGGTATTATAGAGATGGTGGACCTCGTGGGGTTGATAAGTATGGAAGTGGCGGTCCAGCACGTGACGAGGGAAGAAGCTACAGGAACAGACCAACTCCTTATGATCGCCCTAGCCGAGGTGGGCGACCATCCTCATTTGATCGCTATTGAATGTTTTGTTAGAAGATAGCACATTTTCTGGTTTATCTAGTAAAAGTGTACTACATGCTGGGTGTTGTGCTGTTAGTTATCTAGGATCTAGTTGCAGTACCGTGGCCCGAACCGACCGACAGACAGATTGTTGCGGTTTCGTCTAGCTTTCATGTATCTGAGTTTTTGTTCAGAGACAAGATAAATGCTCTGAAGAACGATGAATGGACAGAGACAGATTTAAGTTGACAATTTTGTGATTCCTAAAATGTTGAGCTGATTGTCGTACTGAGCTGACATATGAAGGTCGAGTCGGGGGGCCCCGAGGCTCGTTTGAATCGTAAGCCACAAAACAGATTAGTAAATACAATTCTAGAAGCAAGAGGCTCCTCTCCATATTTGTGTATTGAGCAGCACCTAGTTCTCTGCCGGATAGAGCTATCATAGAGGAAGTATGAAGCTTGAAATTGGCCTCTCTCGATCTGAGCATTGGTCAATTAGTTAAGATTTACGTCAATTTACGTCTTCTATCGATCAGAAACTCAAATAATATCTCGTTTGGATGATCTGTCATTATGAAGCTAGTCTCTCGATAAGCACCAAGAACTCTCCTGGCGATCTGAACATTGGTCAATTAAGATTTACGTCATTTACGTCATCTATAGATCAGAAATTCAAATAATATCTTGTTTGGATGATCGGGCAATAAAGCAGCTGTCGTTTTTGGAAAAACTCCCACGAGTCCAATGGTGTGAGAGTTGAATTCCAAATCATTGACAATGGGCAAATATGATGACCATAAAACAATATTGAATGTATTGATATCATCTTTATCTTATGGTTGAATCTTCGCTTGTTGGAACGAAATTAATTGAAAACCATACTCTCAGGCTGTCCATCTTCTGGCCTCATTTTCACAAGTCAACCTCCATGTTCTTGGGAAAATAAAAACATTTATATTTAATTATG

mRNA sequence

ATGGCTGGGAGAGAGGAGTACCGAATATTTGTGGGAGGATTGTCGTGGGACATCACGGAGCGTCTGCTTGAGAATGCCTTCAGTCGATTCGGCAAAATTATCGATTCTCAGGTTACCATTTTTATAAGGTTTGGGATAGATTGCCATATTGACTCAGATAATGAGTTTGCTAAGTCCTCTAATCTCAGAAAATCTTCAGAAGCTATCATGTTGGAAAAGAATACTGGCCGCCCACGTGGCTTTGGGTTTATTACATTTTCAGATCGCCGGGGAATGGATGATGCCATCAGAGAGATGCATGGACGAGAATTTGGAGAACGAATCATTTCAGTGAACAAGGCTGAACCTAAAATGGGAGAAGATATAGACCATGGTGGCGGGCGCTTTGGAGATCGGGATCGTTTTGATAACAGCAGGGACAGTAAATATGGAACTCGTGATCGCTATGTCAGTGAAAGATACCCACCTGGTGGAGATCGCTTTGGTAGCAGTAGGTACAATAACGATTCTGATCGATTTCCCACAAATGGCTATGGCAAAGATAGGGGGTATTATAGAGATGGTGGACCTCGTGGGGTTGATAAGTATGGAAGTGGCGGTCCAGCACGTGACGAGGGAAGAAGCTACAGGAACAGACCAACTCCTTATGATCGCCCTAGCCGAGGTGGGCGACCATCCTCATTTGATCGCTATTGAATGTTTTGTTAGAAGATAGCACATTTTCTGGTTTATCTAGTAAAAGTGTACTACATGCTGGGTGTTGTGCTGTTAGTTATCTAGGATCTAGTTGCAGTACCGTGGCCCGAACCGACCGACAGACAGATTGTTGCGGTTTCGTCTAGCTTTCATGTATCTGAGTTTTTGTTCAGAGACAAGATAAATGCTCTGAAGAACGATGAATGGACAGAGACAGATTTAAGTTGACAATTTTGTGATTCCTAAAATGTTGAGCTGATTGTCGTACTGAGCTGACATATGAAGGTCGAGTCGGGGGGCCCCGAGGCTCGTTTGAATCGTAAGCCACAAAACAGATTAGTAAATACAATTCTAGAAGCAAGAGGCTCCTCTCCATATTTGTGTATTGAGCAGCACCTAGTTCTCTGCCGGATAGAGCTATCATAGAGGAAGTATGAAGCTTGAAATTGGCCTCTCTCGATCTGAGCATTGGTCAATTAGTTAAGATTTACGTCAATTTACGTCTTCTATCGATCAGAAACTCAAATAATATCTCGTTTGGATGATCTGTCATTATGAAGCTAGTCTCTCGATAAGCACCAAGAACTCTCCTGGCGATCTGAACATTGGTCAATTAAGATTTACGTCATTTACGTCATCTATAGATCAGAAATTCAAATAATATCTTGTTTGGATGATCGGGCAATAAAGCAGCTGTCGTTTTTGGAAAAACTCCCACGAGTCCAATGGTGTGAGAGTTGAATTCCAAATCATTGACAATGGGCAAATATGATGACCATAAAACAATATTGAATGTATTGATATCATCTTTATCTTATGGTTGAATCTTCGCTTGTTGGAACGAAATTAATTGAAAACCATACTCTCAGGCTGTCCATCTTCTGGCCTCATTTTCACAAGTCAACCTCCATGTTCTTGGGAAAATAAAAACATTTATATTTAATTATG

Coding sequence (CDS)

ATGGCTGGGAGAGAGGAGTACCGAATATTTGTGGGAGGATTGTCGTGGGACATCACGGAGCGTCTGCTTGAGAATGCCTTCAGTCGATTCGGCAAAATTATCGATTCTCAGGTTACCATTTTTATAAGGTTTGGGATAGATTGCCATATTGACTCAGATAATGAGTTTGCTAAGTCCTCTAATCTCAGAAAATCTTCAGAAGCTATCATGTTGGAAAAGAATACTGGCCGCCCACGTGGCTTTGGGTTTATTACATTTTCAGATCGCCGGGGAATGGATGATGCCATCAGAGAGATGCATGGACGAGAATTTGGAGAACGAATCATTTCAGTGAACAAGGCTGAACCTAAAATGGGAGAAGATATAGACCATGGTGGCGGGCGCTTTGGAGATCGGGATCGTTTTGATAACAGCAGGGACAGTAAATATGGAACTCGTGATCGCTATGTCAGTGAAAGATACCCACCTGGTGGAGATCGCTTTGGTAGCAGTAGGTACAATAACGATTCTGATCGATTTCCCACAAATGGCTATGGCAAAGATAGGGGGTATTATAGAGATGGTGGACCTCGTGGGGTTGATAAGTATGGAAGTGGCGGTCCAGCACGTGACGAGGGAAGAAGCTACAGGAACAGACCAACTCCTTATGATCGCCCTAGCCGAGGTGGGCGACCATCCTCATTTGATCGCTATTGA

Protein sequence

MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQVTIFIRFGIDCHIDSDNEFAKSSNLRKSSEAIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDSDRFPTNGYGKDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRPTPYDRPSRGGRPSSFDRY

Homology

[Close]

BLAST of Cp4.1LG01g14720 vs. ExPASy Swiss-Prot
Match: O22703 (Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE=2 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.1e-42
Identity = 125/316 (39.56%), Postives = 146/316 (46.20%), Query Frame = 0


Query: 3   GREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQVTIFIRFGIDCHIDSDNEFAKSSNL 62
           G  E RIFVGGLSWD+TER LE+ F R+GKI + Q                         
Sbjct: 8   GNLESRIFVGGLSWDVTERQLESTFDRYGKITECQ------------------------- 67

Query: 63  RKSSEAIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKM-GED 122
                 IM+ ++TGRPRGFGFITF+DRRG DDAI+ MHGRE G ++ISVNKAEPK+ GED
Sbjct: 68  ------IMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPKVGGED 127

Query: 123 IDH---GGG--------------------------------------------------- 182
           +D    GGG                                                   
Sbjct: 128 VDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDCPSTGDDRERFRVPLAMRSRIGDIDGH 187

Query: 183 --RFGDRD---------RFDNSRD-------------------SKYGTRDRYVSERYPPG 232
             R+GDRD          FD   D                    KY  RD Y  ERY P 
Sbjct: 188 RDRYGDRDLEREREREREFDRYMDGRRDRDGGRYSYRDRFDSGDKYEPRDHYPFERYAPP 247

[Close]

BLAST of Cp4.1LG01g14720 vs. ExPASy Swiss-Prot
Match: Q8RWN5 (Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana OX=3702 GN=RZ1C PE=1 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.2e-36
Identity = 126/343 (36.73%), Postives = 156/343 (45.48%), Query Frame = 0


Query: 1   MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQVTIFIRFGIDCHIDSDNEFAKSS 60
           MA +E  RIFVGGLS ++T+R LE AFSRFG I+D Q                       
Sbjct: 1   MAAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQ----------------------- 60

Query: 61  NLRKSSEAIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGE 120
                   IMLE++TGR RGFGFITF+DRR MD++IREMHGR+FG+R+ISVN+AEPK+G 
Sbjct: 61  --------IMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAEPKLGR 120

Query: 121 D-------------------------------------------IDH--------GGG-- 180
           D                                           + H        GGG  
Sbjct: 121 DDGESHGSRGGRDSGYSIAGKGSFGGGGGGGGRVGEDECFKCGRVGHWARDCPSAGGGRG 180

Query: 181 --------------------------------------------RFGDRDRFDNSRDSKY 232
                                                       R+G RDRFD SR++ Y
Sbjct: 181 GPVGGFSSRASAYGGSDGRVDRYADRDRYVDRERYIDDRYDGAARYGARDRFD-SREA-Y 240

[Close]

BLAST of Cp4.1LG01g14720 vs. ExPASy Swiss-Prot
Match: Q9LIN3 (Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana OX=3702 GN=RZ1A PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 9.8e-20
Identity = 83/281 (29.54%), Postives = 124/281 (44.13%), Query Frame = 0


Query: 1   MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQVTIFIRFGIDCHIDSDNEFAKSS 60
           M+   EYR F+GGL+W  ++R L +AF ++G +++++V                      
Sbjct: 1   MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKV---------------------- 60

Query: 61  NLRKSSEAIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMG- 120
                    +L+K +GR RGFGFITF +++ MD+AI  M+G +   R I+V+KA+P  G 
Sbjct: 61  ---------VLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQPHQGG 120

Query: 121 ----------------------------------------------EDIDHGGGRFGDRD 180
                                                         E    GGGRF  +D
Sbjct: 121 AGRDNDGDRGRDRGYDRDRSRPSGGRGGGDCFKCGKPGHFARECPSESSRDGGGRFSSKD 180

Query: 181 RFDNSRDSKYGTRDRYVSERYPPGGDRFGS--SRYNNDSDRFPTNGYGKDRGYYRDGGPR 224
              +S+D +YG +D    +RY    DR+G+   RY++  DR+ +     DR   RDGG  
Sbjct: 181 DRYSSKDDRYGAKD----DRYGAKEDRYGAKDDRYSSKDDRYSSK---DDRYGSRDGGGS 240

[Close]

BLAST of Cp4.1LG01g14720 vs. ExPASy Swiss-Prot
Match: Q05966 (Glycine-rich RNA-binding protein 10 OS=Brassica napus OX=3708 GN=GRP10 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 8.6e-16
Identity = 72/205 (35.12%), Postives = 90/205 (43.90%), Query Frame = 0


Query: 6   EYRIFVGGLSWDITERLLENAFSRFGKIIDSQVTIFIRFGIDCHIDSDNEFAKSSNLRKS 65
           EYR FVGGL+W   +  LE  FS+FG++IDS+                            
Sbjct: 5   EYRCFVGGLAWATGDAELERTFSQFGEVIDSK---------------------------- 64

Query: 66  SEAIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHG 125
              I+ ++ TGR RGFGF+TF D + M DAI EM+G+E   R I+VN+A+ + G     G
Sbjct: 65  ---IINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQSRGG---GGG 124

Query: 126 GGRFGDRDRFDNSRDSKYGTRDRYVSERYPPG----GDRFGSSRYNNDSDRFPTNGYGKD 185
           GGR G            YG R       Y  G    GDR G   Y +        GYG  
Sbjct: 125 GGRGG----------GGYGGRG---GGGYGGGGGGYGDRRGGGGYGSGGGGRGGGGYGSG 162

Query: 186 RGYY------RDGGPRGVDKYGSGG 201
            G Y      RDGG  G    G GG
Sbjct: 185 GGGYGGGGGRRDGGGYGGGDGGYGG 162

[Close]

BLAST of Cp4.1LG01g14720 vs. ExPASy Swiss-Prot
Match: Q99070 (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.1e-15
Identity = 71/210 (33.81%), Postives = 93/210 (44.29%), Query Frame = 0


Query: 6   EYRIFVGGLSWDITERLLENAFSRFGKIIDSQVTIFIRFGIDCHIDSDNEFAKSSNLRKS 65
           EYR FVGGL+W      LE AF+ FG++IDS+V                           
Sbjct: 7   EYRCFVGGLAWATNNETLEQAFANFGQVIDSKV--------------------------- 66

Query: 66  SEAIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHG 125
               + ++ TGR RGFGF+TFS  + M DAI  M+G+E   R I+VN+A+ + G     G
Sbjct: 67  ----ITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSRGG---GGG 126

Query: 126 GGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDSDRFPTNGYGKDRGYY 185
           GG +G            YG R+      Y  GG  +G  R       +   GYG   G Y
Sbjct: 127 GGGYG-------GGGGGYGGRE---GGGYGGGGGGYGGRREGGGG--YGGGGYGGGGGGY 168

Query: 186 RDGGPRGVDKYGS----GGPARDEGRSYRN 212
             GG  G   YG     GG   D G ++RN
Sbjct: 187 --GGREGGGGYGGGGGYGGNRGDSGGNWRN 168

[Close]

BLAST of Cp4.1LG01g14720 vs. NCBI nr
Match: XP_023535688.1 (glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 363 bits (933), Expect = 1.61e-124
Identity = 200/301 (66.45%), Postives = 200/301 (66.45%), Query Frame = 0


Query: 1   MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQVTIFIRFGIDCHIDSDNEFAKSS 60
           MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQ                       
Sbjct: 1   MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQ----------------------- 60

Query: 61  NLRKSSEAIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGE 120
                   IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGE
Sbjct: 61  --------IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGE 120

Query: 121 DIDHG------------------------------------------------------- 180
           DIDHG                                                       
Sbjct: 121 DIDHGYRGGGDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDR 180

Query: 181 ---------------GGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDS 231
                          GGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDS
Sbjct: 181 FAGDNNRYVDDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDS 240

[Close]

BLAST of Cp4.1LG01g14720 vs. NCBI nr
Match: XP_022956605.1 (glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 360 bits (923), Expect = 5.36e-123
Identity = 198/301 (65.78%), Postives = 198/301 (65.78%), Query Frame = 0


Query: 1   MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQVTIFIRFGIDCHIDSDNEFAKSS 60
           MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQ                       
Sbjct: 1   MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQ----------------------- 60

Query: 61  NLRKSSEAIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGE 120
                   IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGE
Sbjct: 61  --------IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGE 120

Query: 121 DIDHG------------------------------------------------------- 180
           DIDHG                                                       
Sbjct: 121 DIDHGYRGGGDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDR 180

Query: 181 ---------------GGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDS 231
                          GGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDS
Sbjct: 181 FAGDNNRYVDDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDS 240

[Close]

BLAST of Cp4.1LG01g14720 vs. NCBI nr
Match: XP_023003387.1 (glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 359 bits (922), Expect = 7.61e-123
Identity = 198/301 (65.78%), Postives = 198/301 (65.78%), Query Frame = 0


Query: 1   MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQVTIFIRFGIDCHIDSDNEFAKSS 60
           MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQ                       
Sbjct: 1   MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQ----------------------- 60

Query: 61  NLRKSSEAIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGE 120
                   IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGE
Sbjct: 61  --------IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGE 120

Query: 121 DIDHG------------------------------------------------------- 180
           DIDHG                                                       
Sbjct: 121 DIDHGYRGGGDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDR 180

Query: 181 ---------------GGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDS 231
                          GGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDS
Sbjct: 181 FAGDNNRYVDDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDS 240

[Close]

BLAST of Cp4.1LG01g14720 vs. NCBI nr
Match: KAG6601184.1 (Glycine-rich RNA-binding protein RZ1C, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 343 bits (880), Expect = 7.38e-116
Identity = 195/308 (63.31%), Postives = 201/308 (65.26%), Query Frame = 0


Query: 1   MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQVTIF-IRFG--IDCHID------ 60
           MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQ   + +  G  + C  D      
Sbjct: 1   MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQKKCYCLEIGNMVACLADRGLIND 60

Query: 61  -SDNEFAKSSNLRKSS-------EAIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGRE 120
               E   S+ L  +S       + IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGRE
Sbjct: 61  LKPEELLTSAVLMPASADLDCFIKNIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGRE 120

Query: 121 FGERIISVNKAEPKMGEDIDHG-------------------------------------- 180
           FGERIISVNKAEPKMGEDIDHG                                      
Sbjct: 121 FGERIISVNKAEPKMGEDIDHGYRGGGDRSARQDECFKCGRHGHWARDCPSVGGGRGRGG 180

Query: 181 --------------------------------GGRFGDRDRFDNSRDSKYGTRDRYVSER 221
                                           GGRFGDRDRFDNSRDSKYGTRDRYVSER
Sbjct: 181 DSFLTRSRLGDSDRGDRFAGDNNRYVDDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSER 240

[Close]

BLAST of Cp4.1LG01g14720 vs. NCBI nr
Match: XP_038892830.1 (glycine-rich RNA-binding protein RZ1C-like isoform X1 [Benincasa hispida])

HSP 1 Score: 336 bits (862), Expect = 1.84e-113
Identity = 190/318 (59.75%), Postives = 197/318 (61.95%), Query Frame = 0


Query: 1   MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQVTIFIRFGIDCHIDSDNEFAKSS 60
           MAGREEYRIFVGGLSWDITER LENAF+RFGKIIDSQ                       
Sbjct: 1   MAGREEYRIFVGGLSWDITERQLENAFNRFGKIIDSQ----------------------- 60

Query: 61  NLRKSSEAIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGE 120
                   IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHG+EFGERIISVNKAEPKMGE
Sbjct: 61  --------IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGE 120

Query: 121 DIDHG------------------------------------------------------- 180
           D+DHG                                                       
Sbjct: 121 DMDHGYRGGGYSTGGRGSYGGGGGGGDRSARQDECFKCGRLGHWARDCPSVGGGRGRGGD 180

Query: 181 -------------------------------GGRFGDRDRFDNS-RDSKYGTRDRYVSER 231
                                          GGRFGDRDRFD+S RD+KYG+RDRYVSER
Sbjct: 181 SFLARARLGDSDRGDRFAGDNNRYVDDRYEGGGRFGDRDRFDSSSRDNKYGSRDRYVSER 240

[Close]

BLAST of Cp4.1LG01g14720 vs. ExPASy TrEMBL
Match: A0A6J1GY86 (glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458292 PE=4 SV=1)

HSP 1 Score: 360 bits (923), Expect = 2.59e-123
Identity = 198/301 (65.78%), Postives = 198/301 (65.78%), Query Frame = 0


Query: 1   MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQVTIFIRFGIDCHIDSDNEFAKSS 60
           MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQ                       
Sbjct: 1   MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQ----------------------- 60

Query: 61  NLRKSSEAIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGE 120
                   IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGE
Sbjct: 61  --------IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGE 120

Query: 121 DIDHG------------------------------------------------------- 180
           DIDHG                                                       
Sbjct: 121 DIDHGYRGGGDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDR 180

Query: 181 ---------------GGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDS 231
                          GGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDS
Sbjct: 181 FAGDNNRYVDDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDS 240

[Close]

BLAST of Cp4.1LG01g14720 vs. ExPASy TrEMBL
Match: A0A6J1KMD7 (glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496986 PE=4 SV=1)

HSP 1 Score: 359 bits (922), Expect = 3.68e-123
Identity = 198/301 (65.78%), Postives = 198/301 (65.78%), Query Frame = 0


Query: 1   MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQVTIFIRFGIDCHIDSDNEFAKSS 60
           MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQ                       
Sbjct: 1   MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQ----------------------- 60

Query: 61  NLRKSSEAIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGE 120
                   IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGE
Sbjct: 61  --------IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGE 120

Query: 121 DIDHG------------------------------------------------------- 180
           DIDHG                                                       
Sbjct: 121 DIDHGYRGGGDRSARQDECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDR 180

Query: 181 ---------------GGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDS 231
                          GGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDS
Sbjct: 181 FAGDNNRYVDDRYEGGGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDS 240

[Close]

BLAST of Cp4.1LG01g14720 vs. ExPASy TrEMBL
Match: A0A1S3BGN5 (glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489439 PE=4 SV=1)

HSP 1 Score: 330 bits (846), Expect = 2.17e-111
Identity = 188/316 (59.49%), Postives = 195/316 (61.71%), Query Frame = 0


Query: 1   MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQVTIFIRFGIDCHIDSDNEFAKSS 60
           MAGREEYRIFVGGLSWDITER LENAF+RFGKIIDSQ                       
Sbjct: 1   MAGREEYRIFVGGLSWDITERQLENAFNRFGKIIDSQ----------------------- 60

Query: 61  NLRKSSEAIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGE 120
                   IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHG+EFGERIISVNKAEPKMGE
Sbjct: 61  --------IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGE 120

Query: 121 DIDHG------------------------------------------------------- 180
           D+DHG                                                       
Sbjct: 121 DMDHGYRGGGYSTGGRGSYGGGGGDRSARQDECFKCGRLGHWARDCPSVGGGRGRGGDSF 180

Query: 181 -----------------------------GGRFGDRDRFDNS-RDSKYGTRDRYVSERYP 231
                                        GGRFGDRDRFD+S RD+KYG+RDRYVS+RYP
Sbjct: 181 LARSRLGDGDRGDRFAGDTNRYVDDRYEGGGRFGDRDRFDSSSRDNKYGSRDRYVSDRYP 240

[Close]

BLAST of Cp4.1LG01g14720 vs. ExPASy TrEMBL
Match: A0A5D3CG30 (Glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002430 PE=4 SV=1)

HSP 1 Score: 330 bits (846), Expect = 2.17e-111
Identity = 188/316 (59.49%), Postives = 195/316 (61.71%), Query Frame = 0


Query: 1   MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQVTIFIRFGIDCHIDSDNEFAKSS 60
           MAGREEYRIFVGGLSWDITER LENAF+RFGKIIDSQ                       
Sbjct: 1   MAGREEYRIFVGGLSWDITERQLENAFNRFGKIIDSQ----------------------- 60

Query: 61  NLRKSSEAIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGE 120
                   IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHG+EFGERIISVNKAEPKMGE
Sbjct: 61  --------IMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGE 120

Query: 121 DIDHG------------------------------------------------------- 180
           D+DHG                                                       
Sbjct: 121 DMDHGYRGGGYSTGGRGSYGGGGGDRSARQDECFKCGRLGHWARDCPSVGGGRGRGGDSF 180

Query: 181 -----------------------------GGRFGDRDRFDNS-RDSKYGTRDRYVSERYP 231
                                        GGRFGDRDRFD+S RD+KYG+RDRYVS+RYP
Sbjct: 181 LARSRLGDGDRGDRFAGDTNRYVDDRYEGGGRFGDRDRFDSSSRDNKYGSRDRYVSDRYP 240

[Close]

BLAST of Cp4.1LG01g14720 vs. ExPASy TrEMBL
Match: A0A6J1CFE7 (glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111010282 PE=4 SV=1)

HSP 1 Score: 319 bits (817), Expect = 9.23e-107
Identity = 185/330 (56.06%), Postives = 191/330 (57.88%), Query Frame = 0


Query: 1   MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQVTIFIRFGIDCHIDSDNEFAKSS 60
           MAGREEYRIFVGGLSWDITER LENAFSRFGKIIDSQ                       
Sbjct: 1   MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQ----------------------- 60

Query: 61  NLRKSSEAIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGE 120
                   IMLEKNTGR RGFGFITFSDRRGMDDAIREMHG+E GERIISVNKAEPKMGE
Sbjct: 61  --------IMLEKNTGRRRGFGFITFSDRRGMDDAIREMHGQELGERIISVNKAEPKMGE 120

Query: 121 DIDHG------------------------------------------------------- 180
           DIDHG                                                       
Sbjct: 121 DIDHGYRGAGYSTGGRGGSYGGGGGDKSARQDECFKCGRLGHWARDCHSVGGGRGRGDSF 180

Query: 181 ----------------------------GGRFGDRDRFDNSRDSKYGTRDRYVSERYPPG 231
                                       GGRFGDRDRFD+SRD+KY +RDRYVS+RYPP 
Sbjct: 181 LARSRLGDSDRGDRFAGDNNRYVDDRYEGGRFGDRDRFDSSRDNKYASRDRYVSDRYPPS 240

[Close]

BLAST of Cp4.1LG01g14720 vs. TAIR 10
Match: AT1G60650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 174.9 bits (442), Expect = 7.7e-44
Identity = 125/316 (39.56%), Postives = 146/316 (46.20%), Query Frame = 0


Query: 3   GREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQVTIFIRFGIDCHIDSDNEFAKSSNL 62
           G  E RIFVGGLSWD+TER LE+ F R+GKI + Q                         
Sbjct: 8   GNLESRIFVGGLSWDVTERQLESTFDRYGKITECQ------------------------- 67

Query: 63  RKSSEAIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKM-GED 122
                 IM+ ++TGRPRGFGFITF+DRRG DDAI+ MHGRE G ++ISVNKAEPK+ GED
Sbjct: 68  ------IMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPKVGGED 127

Query: 123 IDH---GGG--------------------------------------------------- 182
           +D    GGG                                                   
Sbjct: 128 VDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDCPSTGDDRERFRVPLAMRSRIGDIDGH 187

Query: 183 --RFGDRD---------RFDNSRD-------------------SKYGTRDRYVSERYPPG 232
             R+GDRD          FD   D                    KY  RD Y  ERY P 
Sbjct: 188 RDRYGDRDLEREREREREFDRYMDGRRDRDGGRYSYRDRFDSGDKYEPRDHYPFERYAPP 247

[Close]

BLAST of Cp4.1LG01g14720 vs. TAIR 10
Match: AT1G60650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 174.9 bits (442), Expect = 7.7e-44
Identity = 125/316 (39.56%), Postives = 146/316 (46.20%), Query Frame = 0


Query: 3   GREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQVTIFIRFGIDCHIDSDNEFAKSSNL 62
           G  E RIFVGGLSWD+TER LE+ F R+GKI + Q                         
Sbjct: 8   GNLESRIFVGGLSWDVTERQLESTFDRYGKITECQ------------------------- 67

Query: 63  RKSSEAIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKM-GED 122
                 IM+ ++TGRPRGFGFITF+DRRG DDAI+ MHGRE G ++ISVNKAEPK+ GED
Sbjct: 68  ------IMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPKVGGED 127

Query: 123 IDH---GGG--------------------------------------------------- 182
           +D    GGG                                                   
Sbjct: 128 VDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDCPSTGDDRERFRVPLAMRSRIGDIDGH 187

Query: 183 --RFGDRD---------RFDNSRD-------------------SKYGTRDRYVSERYPPG 232
             R+GDRD          FD   D                    KY  RD Y  ERY P 
Sbjct: 188 RDRYGDRDLEREREREREFDRYMDGRRDRDGGRYSYRDRFDSGDKYEPRDHYPFERYAPP 247

[Close]

BLAST of Cp4.1LG01g14720 vs. TAIR 10
Match: AT5G04280.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 154.8 bits (390), Expect = 8.2e-38
Identity = 126/343 (36.73%), Postives = 156/343 (45.48%), Query Frame = 0


Query: 1   MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQVTIFIRFGIDCHIDSDNEFAKSS 60
           MA +E  RIFVGGLS ++T+R LE AFSRFG I+D Q                       
Sbjct: 1   MAAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQ----------------------- 60

Query: 61  NLRKSSEAIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGE 120
                   IMLE++TGR RGFGFITF+DRR MD++IREMHGR+FG+R+ISVN+AEPK+G 
Sbjct: 61  --------IMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAEPKLGR 120

Query: 121 D-------------------------------------------IDH--------GGG-- 180
           D                                           + H        GGG  
Sbjct: 121 DDGESHGSRGGRDSGYSIAGKGSFGGGGGGGGRVGEDECFKCGRVGHWARDCPSAGGGRG 180

Query: 181 --------------------------------------------RFGDRDRFDNSRDSKY 232
                                                       R+G RDRFD SR++ Y
Sbjct: 181 GPVGGFSSRASAYGGSDGRVDRYADRDRYVDRERYIDDRYDGAARYGARDRFD-SREA-Y 240

[Close]

BLAST of Cp4.1LG01g14720 vs. TAIR 10
Match: AT3G26420.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 98.6 bits (244), Expect = 7.0e-21
Identity = 83/281 (29.54%), Postives = 124/281 (44.13%), Query Frame = 0


Query: 1   MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQVTIFIRFGIDCHIDSDNEFAKSS 60
           M+   EYR F+GGL+W  ++R L +AF ++G +++++V                      
Sbjct: 1   MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKV---------------------- 60

Query: 61  NLRKSSEAIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMG- 120
                    +L+K +GR RGFGFITF +++ MD+AI  M+G +   R I+V+KA+P  G 
Sbjct: 61  ---------VLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQPHQGG 120

Query: 121 ----------------------------------------------EDIDHGGGRFGDRD 180
                                                         E    GGGRF  +D
Sbjct: 121 AGRDNDGDRGRDRGYDRDRSRPSGGRGGGDCFKCGKPGHFARECPSESSRDGGGRFSSKD 180

Query: 181 RFDNSRDSKYGTRDRYVSERYPPGGDRFGS--SRYNNDSDRFPTNGYGKDRGYYRDGGPR 224
              +S+D +YG +D    +RY    DR+G+   RY++  DR+ +     DR   RDGG  
Sbjct: 181 DRYSSKDDRYGAKD----DRYGAKEDRYGAKDDRYSSKDDRYSSK---DDRYGSRDGGGS 240

[Close]

BLAST of Cp4.1LG01g14720 vs. TAIR 10
Match: AT4G39260.1 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 79.7 bits (195), Expect = 3.4e-15
Identity = 66/204 (32.35%), Postives = 89/204 (43.63%), Query Frame = 0


Query: 6   EYRIFVGGLSWDITERLLENAFSRFGKIIDSQVTIFIRFGIDCHIDSDNEFAKSSNLRKS 65
           EYR FVGGL+W   +  L+  FS+FG +IDS+                            
Sbjct: 5   EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSK---------------------------- 64

Query: 66  SEAIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGREFGERIISVNKAEPKMGEDIDHG 125
              I+ ++ +GR RGFGF+TF D + M DAI EM+G+E   R+I+VN+A+ +       G
Sbjct: 65  ---IINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSRGSG--GGG 124

Query: 126 GGRFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDSDRFPTNGYGKDRGYY 185
           GGR G    + +     Y             GG   G   Y+         GY +  G Y
Sbjct: 125 GGRGGSGGGYRSGGGGGYS------------GG---GGGGYSGGGG----GGYERRSGGY 154

Query: 186 RDGGPRGVDKYGSGGPARDEGRSY 210
             GG  G   YG GG  R EG  Y
Sbjct: 185 GSGGGGGGRGYGGGG--RREGGGY 154

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g14720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22703	1.1e-42	39.56	Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE...	[more]
Q8RWN5	1.2e-36	36.73	Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana OX=3702 GN=RZ1C PE...	[more]
Q9LIN3	9.8e-20	29.54	Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana OX=3702 GN=RZ1A PE...	[more]
Q05966	8.6e-16	35.12	Glycine-rich RNA-binding protein 10 OS=Brassica napus OX=3708 GN=GRP10 PE=2 SV=1	[more]
Q99070	1.1e-15	33.81	Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1	[more]

BLAST of Cp4.1LG01g14720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023535688.1	1.61e-124	66.45	glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucurbita pepo subsp. pep...	[more]
XP_022956605.1	5.36e-123	65.78	glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucurbita moschata]	[more]
XP_023003387.1	7.61e-123	65.78	glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucurbita maxima]	[more]
KAG6601184.1	7.38e-116	63.31	Glycine-rich RNA-binding protein RZ1C, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_038892830.1	1.84e-113	59.75	glycine-rich RNA-binding protein RZ1C-like isoform X1 [Benincasa hispida]	[more]

BLAST of Cp4.1LG01g14720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GY86	2.59e-123	65.78	glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucurbita moschata OX=3...	[more]
A0A6J1KMD7	3.68e-123	65.78	glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucurbita maxima OX=366...	[more]
A0A1S3BGN5	2.17e-111	59.49	glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucumis melo OX=3656 GN...	[more]
A0A5D3CG30	2.17e-111	59.49	Glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucumis melo var. makuw...	[more]
A0A6J1CFE7	9.23e-107	56.06	glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Momordica charantia OX=...	[more]

BLAST of Cp4.1LG01g14720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60650.1	7.7e-44	39.56	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT1G60650.2	7.7e-44	39.56	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT5G04280.1	8.2e-38	36.73	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT3G26420.1	7.0e-21	29.54	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT4G39260.1	3.4e-15	32.35	cold, circadian rhythm, and RNA binding 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 8..112 e-value: 2.6E-20 score: 83.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 9..38 e-value: 3.0E-5 score: 23.8 coord: 70..109 e-value: 7.7E-9 score: 35.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..116 score: 16.210192
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..152 e-value: 2.7E-27 score: 97.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..231
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 198..214
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..154
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 125..193
None	No IPR available	PANTHER	PTHR15241:SF294	GLYCINE-RICH RNA-BINDING PROTEIN RZ1B-LIKE	coord: 125..193 coord: 68..126 coord: 1..39
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 68..126 coord: 1..39
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 4..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g14720.1	Cp4.1LG01g14720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding