Cp4.1LG01g14710 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g14710
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Nodulin-like domain-containing protein
Location	Cp4.1LG01: 7513181 .. 7513468 (+)
RNA-Seq Expression	Cp4.1LG01g14710
Synteny	Cp4.1LG01g14710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGTGGAGCACGAGGAGGATGAGCTGAGGGTTTTTTACAGGTTTTTGTATATCTCGTTGGGGCTGGCTGGGTTTTTGATGCTGATGATAATTTTGCAGCAGAAATTTAGTTTTGGGAGAGGGGAGTACGGTGGCAGTGCGGCGGTGGTTACTCTGTTGCTCCTTTTGCCGATTGTGGTTGTTGTTGCTCAGGAATTCAAGGCGTGGCGGCGCTTGAATAAGCCTCCGGTGATTGAGAATGGGCTTTCCTCCAAGCCGGTGAGTGAAAATTTAATCAATTTTTAA

mRNA sequence

ATGAAGGTGGAGCACGAGGAGGATGAGCTGAGGGTTTTTTACAGGTTTTTGTATATCTCGTTGGGGCTGGCTGGGTTTTTGATGCTGATGATAATTTTGCAGCAGAAATTTAGTTTTGGGAGAGGGGAGTACGGTGGCAGTGCGGCGGTGGTTACTCTGTTGCTCCTTTTGCCGATTGTGGTTGTTGTTGCTCAGGAATTCAAGGCGTGGCGGCGCTTGAATAAGCCTCCGGTGATTGAGAATGGGCTTTCCTCCAAGCCGGTGAGTGAAAATTTAATCAATTTTTAA

Coding sequence (CDS)

ATGAAGGTGGAGCACGAGGAGGATGAGCTGAGGGTTTTTTACAGGTTTTTGTATATCTCGTTGGGGCTGGCTGGGTTTTTGATGCTGATGATAATTTTGCAGCAGAAATTTAGTTTTGGGAGAGGGGAGTACGGTGGCAGTGCGGCGGTGGTTACTCTGTTGCTCCTTTTGCCGATTGTGGTTGTTGTTGCTCAGGAATTCAAGGCGTGGCGGCGCTTGAATAAGCCTCCGGTGATTGAGAATGGGCTTTCCTCCAAGCCGGTGAGTGAAAATTTAATCAATTTTTAA

Protein sequence

MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVTLLLLLPIVVVVAQEFKAWRRLNKPPVIENGLSSKPVSENLINF

Homology

[Close]

BLAST of Cp4.1LG01g14710 vs. NCBI nr
Match: XP_023535773.1 (uncharacterized protein LOC111797103 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 168 bits (426), Expect = 5.14e-47
Identity = 89/94 (94.68%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 1   MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVTLLLLLPIV 60
           MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVTLLLLLPIV
Sbjct: 203 MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVTLLLLLPIV 262

Query: 61  VVVAQEFKAWRRLNKPPVIENGLSSKPVSENLIN 94
           VVVAQEFKAWRRLNKPPVIENGLSSKP +  L N
Sbjct: 263 VVVAQEFKAWRRLNKPPVIENGLSSKPGTPALKN 296

[Close]

BLAST of Cp4.1LG01g14710 vs. NCBI nr
Match: KAG6601187.1 (putative pectate lyase 13, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 168 bits (426), Expect = 4.65e-46
Identity = 89/94 (94.68%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 1   MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVTLLLLLPIV 60
           MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVTLLLLLPIV
Sbjct: 648 MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVTLLLLLPIV 707

Query: 61  VVVAQEFKAWRRLNKPPVIENGLSSKPVSENLIN 94
           VVVAQEFKAWRRLNKPPVIENGLSSKP +  L N
Sbjct: 708 VVVAQEFKAWRRLNKPPVIENGLSSKPGTPALKN 741

[Close]

BLAST of Cp4.1LG01g14710 vs. NCBI nr
Match: XP_022957273.1 (uncharacterized protein LOC111458711 [Cucurbita moschata])

HSP 1 Score: 162 bits (409), Expect = 1.45e-44
Identity = 85/94 (90.43%), Postives = 87/94 (92.55%), Query Frame = 0


Query: 1   MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVTLLLLLPIV 60
           MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAA VTLLLLLPIV
Sbjct: 203 MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAAVTLLLLLPIV 262

Query: 61  VVVAQEFKAWRRLNKPPVIENGLSSKPVSENLIN 94
           VVVAQEFKAWRRLNKPPV+ENGLS  P +  L N
Sbjct: 263 VVVAQEFKAWRRLNKPPVVENGLSYTPGTPALKN 296

[Close]

BLAST of Cp4.1LG01g14710 vs. NCBI nr
Match: KAG6601186.1 (Protein NUCLEAR FUSION DEFECTIVE 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 160 bits (405), Expect = 5.58e-44
Identity = 84/94 (89.36%), Postives = 86/94 (91.49%), Query Frame = 0


Query: 1   MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVTLLLLLPIV 60
           MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVT LLLLPI 
Sbjct: 203 MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVTFLLLLPIA 262

Query: 61  VVVAQEFKAWRRLNKPPVIENGLSSKPVSENLIN 94
           VVVAQEFKAWRRLNKPPV+ENGLS  P +  L N
Sbjct: 263 VVVAQEFKAWRRLNKPPVVENGLSYTPGTPALKN 296

[Close]

BLAST of Cp4.1LG01g14710 vs. NCBI nr
Match: XP_022956542.1 (uncharacterized protein LOC111458253 [Cucurbita moschata])

HSP 1 Score: 159 bits (401), Expect = 2.09e-43
Identity = 83/94 (88.30%), Postives = 86/94 (91.49%), Query Frame = 0


Query: 1   MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVTLLLLLPIV 60
           MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVT LLLLPI 
Sbjct: 203 MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVTFLLLLPIA 262

Query: 61  VVVAQEFKAWRRLNKPPVIENGLSSKPVSENLIN 94
           VVVAQEFKAWRRLN+PPV+ENGLS  P +  L N
Sbjct: 263 VVVAQEFKAWRRLNQPPVVENGLSYTPGTPALKN 296

[Close]

BLAST of Cp4.1LG01g14710 vs. ExPASy TrEMBL
Match: A0A6J1GZR6 (uncharacterized protein LOC111458711 OS=Cucurbita moschata OX=3662 GN=LOC111458711 PE=4 SV=1)

HSP 1 Score: 162 bits (409), Expect = 7.04e-45
Identity = 85/94 (90.43%), Postives = 87/94 (92.55%), Query Frame = 0


Query: 1   MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVTLLLLLPIV 60
           MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAA VTLLLLLPIV
Sbjct: 203 MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAAVTLLLLLPIV 262

Query: 61  VVVAQEFKAWRRLNKPPVIENGLSSKPVSENLIN 94
           VVVAQEFKAWRRLNKPPV+ENGLS  P +  L N
Sbjct: 263 VVVAQEFKAWRRLNKPPVVENGLSYTPGTPALKN 296

[Close]

BLAST of Cp4.1LG01g14710 vs. ExPASy TrEMBL
Match: A0A6J1IJ13 (uncharacterized protein LOC111476469 OS=Cucurbita maxima OX=3661 GN=LOC111476469 PE=4 SV=1)

HSP 1 Score: 159 bits (401), Expect = 1.01e-43
Identity = 83/94 (88.30%), Postives = 86/94 (91.49%), Query Frame = 0


Query: 1   MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVTLLLLLPIV 60
           MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVT LLLLPI 
Sbjct: 203 MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVTFLLLLPIA 262

Query: 61  VVVAQEFKAWRRLNKPPVIENGLSSKPVSENLIN 94
           VVVAQEFKAWRRLN+PPV+ENGLS  P +  L N
Sbjct: 263 VVVAQEFKAWRRLNQPPVVENGLSYTPGTAALKN 296

[Close]

BLAST of Cp4.1LG01g14710 vs. ExPASy TrEMBL
Match: A0A6J1GWM6 (uncharacterized protein LOC111458253 OS=Cucurbita moschata OX=3662 GN=LOC111458253 PE=4 SV=1)

HSP 1 Score: 159 bits (401), Expect = 1.01e-43
Identity = 83/94 (88.30%), Postives = 86/94 (91.49%), Query Frame = 0


Query: 1   MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVTLLLLLPIV 60
           MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVT LLLLPI 
Sbjct: 203 MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVTFLLLLPIA 262

Query: 61  VVVAQEFKAWRRLNKPPVIENGLSSKPVSENLIN 94
           VVVAQEFKAWRRLN+PPV+ENGLS  P +  L N
Sbjct: 263 VVVAQEFKAWRRLNQPPVVENGLSYTPGTPALKN 296

[Close]

BLAST of Cp4.1LG01g14710 vs. ExPASy TrEMBL
Match: A0A0A0KWQ1 (Nodulin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G622530 PE=4 SV=1)

HSP 1 Score: 149 bits (376), Expect = 4.72e-41
Identity = 77/94 (81.91%), Postives = 83/94 (88.30%), Query Frame = 0


Query: 1   MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVTLLLLLPIV 60
           MKVEHEEDEL+VFYRFLYISLGLAGFLM+MIILQQKFSF RGE+GGSAAVVT LLLLPI 
Sbjct: 45  MKVEHEEDELKVFYRFLYISLGLAGFLMIMIILQQKFSFDRGEFGGSAAVVTFLLLLPIA 104

Query: 61  VVVAQEFKAWRRLNKPPVIENGLSSKPVSENLIN 94
           VVVAQEFK+WRRLNKP  +ENG+S  P S  L N
Sbjct: 105 VVVAQEFKSWRRLNKPAALENGISPSPGSPPLKN 138

[Close]

BLAST of Cp4.1LG01g14710 vs. ExPASy TrEMBL
Match: A0A1S3BFH1 (uncharacterized protein LOC103489434 OS=Cucumis melo OX=3656 GN=LOC103489434 PE=4 SV=1)

HSP 1 Score: 151 bits (382), Expect = 5.07e-41
Identity = 79/94 (84.04%), Postives = 83/94 (88.30%), Query Frame = 0


Query: 1   MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVTLLLLLPIV 60
           MKVEHEEDEL+VFYRFLYISLGLAGFLM+MIILQQKFSF RGEYGGSAAVVT LLLLPI 
Sbjct: 199 MKVEHEEDELKVFYRFLYISLGLAGFLMIMIILQQKFSFDRGEYGGSAAVVTFLLLLPIA 258

Query: 61  VVVAQEFKAWRRLNKPPVIENGLSSKPVSENLIN 94
           VVVAQEFK+WRRLNKP  IENG+S  P S  L N
Sbjct: 259 VVVAQEFKSWRRLNKPAAIENGISPSPGSPPLKN 292

[Close]

BLAST of Cp4.1LG01g14710 vs. TAIR 10
Match: AT2G39210.1 (Major facilitator superfamily protein )

HSP 1 Score: 88.6 bits (218), Expect = 3.0e-18
Identity = 49/91 (53.85%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 1   MKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVTLLLLLPIV 60
           MKV+ + +EL+VFY FLYISLGLA FLM++II+ +   F + E+GGSAAVV +LLLLPI+
Sbjct: 204 MKVKRQTNELKVFYNFLYISLGLATFLMVVIIINKLSGFTQSEFGGSAAVVIVLLLLPII 263

Query: 61  VVVAQEFKAWRR----LNKPPVIENGLSSKP 88
           VV+ +E K W+     LN P  I N ++ KP
Sbjct: 264 VVILEEKKLWKEKQVALNDPAPI-NVVTEKP 293

[Close]

BLAST of Cp4.1LG01g14710 vs. TAIR 10
Match: AT2G28120.1 (Major facilitator superfamily protein )

HSP 1 Score: 63.5 bits (153), Expect = 1.0e-10
Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 0


Query: 2   KVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVTLLLLLPIVV 61
           KV  + +EL VFY+FLYIS+ LA FLM M I +++  F +  Y  SA +   LL +P+ V
Sbjct: 201 KVVRQRNELSVFYQFLYISIFLALFLMAMNIAEKQVHFSKAAYAASATICCALLFVPLTV 260

Query: 62  VVAQEFKAWRRLNKP 77
            V QE + W  +  P
Sbjct: 261 SVKQELEVWNMMKLP 275

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g14710 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g14710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023535773.1	5.14e-47	94.68	uncharacterized protein LOC111797103 [Cucurbita pepo subsp. pepo]	[more]
KAG6601187.1	4.65e-46	94.68	putative pectate lyase 13, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022957273.1	1.45e-44	90.43	uncharacterized protein LOC111458711 [Cucurbita moschata]	[more]
KAG6601186.1	5.58e-44	89.36	Protein NUCLEAR FUSION DEFECTIVE 4, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_022956542.1	2.09e-43	88.30	uncharacterized protein LOC111458253 [Cucurbita moschata]	[more]

BLAST of Cp4.1LG01g14710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GZR6	7.04e-45	90.43	uncharacterized protein LOC111458711 OS=Cucurbita moschata OX=3662 GN=LOC1114587...	[more]
A0A6J1IJ13	1.01e-43	88.30	uncharacterized protein LOC111476469 OS=Cucurbita maxima OX=3661 GN=LOC111476469...	[more]
A0A6J1GWM6	1.01e-43	88.30	uncharacterized protein LOC111458253 OS=Cucurbita moschata OX=3662 GN=LOC1114582...	[more]
A0A0A0KWQ1	4.72e-41	81.91	Nodulin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G62253...	[more]
A0A1S3BFH1	5.07e-41	84.04	uncharacterized protein LOC103489434 OS=Cucumis melo OX=3656 GN=LOC103489434 PE=...	[more]

BLAST of Cp4.1LG01g14710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39210.1	3.0e-18	53.85	Major facilitator superfamily protein	[more]
AT2G28120.1	1.0e-10	42.67	Major facilitator superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010658	Nodulin-like	PFAM	PF06813	Nodulin-like	coord: 3..63 e-value: 1.9E-9 score: 37.4
None	No IPR available	PANTHER	PTHR21576	UNCHARACTERIZED NODULIN-LIKE PROTEIN	coord: 1..78
None	No IPR available	PANTHER	PTHR21576:SF122	MFS TRANSPORTER	coord: 1..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g14710.1	Cp4.1LG01g14710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0022857	transmembrane transporter activity