Cp4.1LG01g14440 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g14440
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	cyclin-dependent protein kinase inhibitor SMR1-like
Location	Cp4.1LG01: 7570341 .. 7570733 (-)
RNA-Seq Expression	Cp4.1LG01g14440
Synteny	Cp4.1LG01g14440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACAGACCTCGATCTCCGACGGACTTTGTTGGAAGTCGTCCGCCGTCCGGCGATCAAGCTTCAAATTCCACGGCCGTTGTCATCAATGGCAGCCGATCACGGCGGTGTGATAATTCAGAAAGAGAGAAATGATAAAATCGACGGCGGCGCTGAAGAATTATGCTGCCGCACGCCGACATCAGCAGAGAACAAGATTCCAGTGGTGCTACAATGTCCGCCGGCGCCGCGGAAACGGAAGAGACCTCCGACTTGTAGAAGAAGACTAATCGAGCTTGAATTCGTGGAGATCGTGAGTAGAGAAGAGATCGAACCGTATTTTACTTCGAGTTTCGATCACGAAAACAGAGTAAAAAAATCCGCTAAAATAAGCTTCTGCGAGTGTAAATGA

mRNA sequence

ATGTCTACAGACCTCGATCTCCGACGGACTTTGTTGGAAGTCGTCCGCCGTCCGGCGATCAAGCTTCAAATTCCACGGCCGTTGTCATCAATGGCAGCCGATCACGGCGGTGTGATAATTCAGAAAGAGAGAAATGATAAAATCGACGGCGGCGCTGAAGAATTATGCTGCCGCACGCCGACATCAGCAGAGAACAAGATTCCAGTGGTGCTACAATGTCCGCCGGCGCCGCGGAAACGGAAGAGACCTCCGACTTGTAGAAGAAGACTAATCGAGCTTGAATTCGTGGAGATCGTGAGTAGAGAAGAGATCGAACCGTATTTTACTTCGAGTTTCGATCACGAAAACAGAGTAAAAAAATCCGCTAAAATAAGCTTCTGCGAGTGTAAATGA

Coding sequence (CDS)

ATGTCTACAGACCTCGATCTCCGACGGACTTTGTTGGAAGTCGTCCGCCGTCCGGCGATCAAGCTTCAAATTCCACGGCCGTTGTCATCAATGGCAGCCGATCACGGCGGTGTGATAATTCAGAAAGAGAGAAATGATAAAATCGACGGCGGCGCTGAAGAATTATGCTGCCGCACGCCGACATCAGCAGAGAACAAGATTCCAGTGGTGCTACAATGTCCGCCGGCGCCGCGGAAACGGAAGAGACCTCCGACTTGTAGAAGAAGACTAATCGAGCTTGAATTCGTGGAGATCGTGAGTAGAGAAGAGATCGAACCGTATTTTACTTCGAGTTTCGATCACGAAAACAGAGTAAAAAAATCCGCTAAAATAAGCTTCTGCGAGTGTAAATGA

Protein sequence

MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKERNDKIDGGAEELCCRTPTSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENRVKKSAKISFCECK

Homology

[Close]

BLAST of Cp4.1LG01g14440 vs. ExPASy Swiss-Prot
Match: Q9LPP4 (Cyclin-dependent protein kinase inhibitor SMR1 OS=Arabidopsis thaliana OX=3702 GN=SMR1 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-07
Identity = 31/92 (33.70%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 42  KERNDKIDGGAEELCCRTPTSAENKIPVVLQCPPAPRKRKRPP-------------TCRR 101
           K + D+ D   ++L C TPTS E+KIP V+  PP P ++ RPP             +C+R
Sbjct: 26  KTKKDEGDDDEDDLRCSTPTSQEHKIPAVVDSPPPPPRKPRPPPSAPSATAALMIRSCKR 85

Query: 102 RLIELEFVEIVSREEIEPYFTSSFDHENRVKK 121
           +L+      I++REEI+ +F+S ++  +   K
Sbjct: 86  KLLVSTCEIIMNREEIDRFFSSVYNETSTTAK 117

[Close]

BLAST of Cp4.1LG01g14440 vs. ExPASy Swiss-Prot
Match: Q29Q81 (Cyclin-dependent protein kinase inhibitor SMR6 OS=Arabidopsis thaliana OX=3702 GN=SMR6 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 6.6e-05
Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = 0


Query: 53 EELCCRTPTSAENKIPVVLQCPPAPRKRKRPPTCRRRLI 92
          EE C  TPT+ E KIP +L+CPPAPRKR+    CR  ++
Sbjct: 56 EEECSTTPTAKETKIPELLECPPAPRKRRPALKCRSNVV 94

[Close]

BLAST of Cp4.1LG01g14440 vs. ExPASy Swiss-Prot
Match: Q9LZ60 (Cyclin-dependent protein kinase inhibitor SMR3 OS=Arabidopsis thaliana OX=3702 GN=SMR3 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.6e-04
Identity = 34/78 (43.59%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 53  EELCCRTPTSAENKIPVV--LQCPPAPRKRK--RPPTCRRRLIELEFVE---IVSREEIE 112
           EE  C+TPTS+++KIP V    CPPAPRK K  R    +R+L  +  V    I    EIE
Sbjct: 40  EEEGCKTPTSSDHKIPEVKYTLCPPAPRKPKPNRSSGTKRKLTPVNVVNRIPIDLSREIE 99

Query: 113 PYFTSSFDHENRVKKSAK 124
            +F    D + R+KKS K
Sbjct: 100 MFFE---DLDRRIKKSRK 114

[Close]

BLAST of Cp4.1LG01g14440 vs. NCBI nr
Match: XP_023531359.1 (cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 262 bits (669), Expect = 3.62e-88
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKERNDKIDGGAEELCCRTP 60
           MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKERNDKIDGGAEELCCRTP
Sbjct: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKERNDKIDGGAEELCCRTP 60

Query: 61  TSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENRVKK 120
           TSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENRVKK
Sbjct: 61  TSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENRVKK 120

Query: 121 SAKISFCECK 130
           SAKISFCECK
Sbjct: 121 SAKISFCECK 130

[Close]

BLAST of Cp4.1LG01g14440 vs. NCBI nr
Match: XP_022957068.1 (cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita moschata] >KAG6601198.1 hypothetical protein SDJN03_06431, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031993.1 hypothetical protein SDJN02_06035, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 256 bits (655), Expect = 4.95e-86
Identity = 128/130 (98.46%), Postives = 128/130 (98.46%), Query Frame = 0


Query: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKERNDKIDGGAEELCCRTP 60
           MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKER D IDGGAEELCCRTP
Sbjct: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKERIDNIDGGAEELCCRTP 60

Query: 61  TSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENRVKK 120
           TSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENRVKK
Sbjct: 61  TSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENRVKK 120

Query: 121 SAKISFCECK 130
           SAKISFCECK
Sbjct: 121 SAKISFCECK 130

[Close]

BLAST of Cp4.1LG01g14440 vs. NCBI nr
Match: XP_022992922.1 (cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita maxima])

HSP 1 Score: 254 bits (649), Expect = 4.07e-85
Identity = 127/130 (97.69%), Postives = 127/130 (97.69%), Query Frame = 0


Query: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKERNDKIDGGAEELCCRTP 60
           MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKER D IDGG EELCCRTP
Sbjct: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKERIDNIDGGDEELCCRTP 60

Query: 61  TSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENRVKK 120
           TSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENRVKK
Sbjct: 61  TSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENRVKK 120

Query: 121 SAKISFCECK 130
           SAKISFCECK
Sbjct: 121 SAKISFCECK 130

[Close]

BLAST of Cp4.1LG01g14440 vs. NCBI nr
Match: XP_038893025.1 (cyclin-dependent protein kinase inhibitor SMR1-like [Benincasa hispida])

HSP 1 Score: 212 bits (539), Expect = 2.20e-68
Identity = 106/130 (81.54%), Postives = 115/130 (88.46%), Query Frame = 0


Query: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKERNDKIDGGAEELCCRTP 60
           MSTDLDLRRTLLE+VRRP IKLQIP P +SMA DHGGVIIQK   D+I    EELCCRTP
Sbjct: 1   MSTDLDLRRTLLEIVRRPPIKLQIPLPSTSMAGDHGGVIIQK---DRITDEEEELCCRTP 60

Query: 61  TSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENRVKK 120
           TSAENKIP V+QCPPAPRKRKRPP+CRRRL+ELEFVEIV+REEIEPY  SSFDHE+RV+K
Sbjct: 61  TSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVEIVNREEIEPYLRSSFDHEDRVRK 120

Query: 121 SAKISFCECK 130
           SAK SFCECK
Sbjct: 121 SAKRSFCECK 127

[Close]

BLAST of Cp4.1LG01g14440 vs. NCBI nr
Match: XP_011655851.1 (cyclin-dependent protein kinase inhibitor SMR1 [Cucumis sativus] >KGN52223.1 hypothetical protein Csa_009104 [Cucumis sativus])

HSP 1 Score: 209 bits (531), Expect = 4.58e-67
Identity = 105/134 (78.36%), Postives = 116/134 (86.57%), Query Frame = 0


Query: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAA----DHGGVIIQKERNDKIDGGAEELC 60
           MST+LDLRRTLLE+VRRP IKLQIP P +S +     DHGGVIIQK+R D+ DGGAEEL 
Sbjct: 1   MSTELDLRRTLLEIVRRPPIKLQIPPPTTSTSVMAGGDHGGVIIQKDRVDEEDGGAEELS 60

Query: 61  CRTPTSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHEN 120
           CRTPTSAENKIP V QCPPAPRKRKRPP+CRRRL+ELEFVEIV R+EIEPY  SSFDHE+
Sbjct: 61  CRTPTSAENKIPAVEQCPPAPRKRKRPPSCRRRLMELEFVEIVHRDEIEPYLNSSFDHED 120

Query: 121 RVKKSAKISFCECK 130
           RV+KSAK SFCECK
Sbjct: 121 RVRKSAKRSFCECK 134

[Close]

BLAST of Cp4.1LG01g14440 vs. ExPASy TrEMBL
Match: A0A6J1GZ63 (cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucurbita moschata OX=3662 GN=LOC111458554 PE=4 SV=1)

HSP 1 Score: 256 bits (655), Expect = 2.40e-86
Identity = 128/130 (98.46%), Postives = 128/130 (98.46%), Query Frame = 0


Query: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKERNDKIDGGAEELCCRTP 60
           MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKER D IDGGAEELCCRTP
Sbjct: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKERIDNIDGGAEELCCRTP 60

Query: 61  TSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENRVKK 120
           TSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENRVKK
Sbjct: 61  TSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENRVKK 120

Query: 121 SAKISFCECK 130
           SAKISFCECK
Sbjct: 121 SAKISFCECK 130

[Close]

BLAST of Cp4.1LG01g14440 vs. ExPASy TrEMBL
Match: A0A6J1JRA3 (cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucurbita maxima OX=3661 GN=LOC111489107 PE=4 SV=1)

HSP 1 Score: 254 bits (649), Expect = 1.97e-85
Identity = 127/130 (97.69%), Postives = 127/130 (97.69%), Query Frame = 0


Query: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKERNDKIDGGAEELCCRTP 60
           MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKER D IDGG EELCCRTP
Sbjct: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKERIDNIDGGDEELCCRTP 60

Query: 61  TSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENRVKK 120
           TSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENRVKK
Sbjct: 61  TSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENRVKK 120

Query: 121 SAKISFCECK 130
           SAKISFCECK
Sbjct: 121 SAKISFCECK 130

[Close]

BLAST of Cp4.1LG01g14440 vs. ExPASy TrEMBL
Match: A0A0A0KRI0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G621910 PE=4 SV=1)

HSP 1 Score: 209 bits (531), Expect = 2.22e-67
Identity = 105/134 (78.36%), Postives = 116/134 (86.57%), Query Frame = 0


Query: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAA----DHGGVIIQKERNDKIDGGAEELC 60
           MST+LDLRRTLLE+VRRP IKLQIP P +S +     DHGGVIIQK+R D+ DGGAEEL 
Sbjct: 1   MSTELDLRRTLLEIVRRPPIKLQIPPPTTSTSVMAGGDHGGVIIQKDRVDEEDGGAEELS 60

Query: 61  CRTPTSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHEN 120
           CRTPTSAENKIP V QCPPAPRKRKRPP+CRRRL+ELEFVEIV R+EIEPY  SSFDHE+
Sbjct: 61  CRTPTSAENKIPAVEQCPPAPRKRKRPPSCRRRLMELEFVEIVHRDEIEPYLNSSFDHED 120

Query: 121 RVKKSAKISFCECK 130
           RV+KSAK SFCECK
Sbjct: 121 RVRKSAKRSFCECK 134

[Close]

BLAST of Cp4.1LG01g14440 vs. ExPASy TrEMBL
Match: A0A5D3CD68 (Cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002260 PE=4 SV=1)

HSP 1 Score: 208 bits (529), Expect = 4.33e-67
Identity = 105/133 (78.95%), Postives = 117/133 (87.97%), Query Frame = 0


Query: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSS--MAADHGGVIIQKERNDK-IDGGAEELCC 60
           MST+LDLRRTLLE+VRRP IKLQIP P ++  M  D GGVIIQK+R DK  DGGAEELCC
Sbjct: 1   MSTELDLRRTLLEIVRRPPIKLQIPLPSTAVVMGGDRGGVIIQKDRIDKGEDGGAEELCC 60

Query: 61  RTPTSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENR 120
           RTPTSAENKIP V+QCPPAPRKRKRPP+CRRRL+ELEFVEIV R+EIEPY  +SFDHE+R
Sbjct: 61  RTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVEIVHRDEIEPYLNASFDHEDR 120

Query: 121 VKKSAKISFCECK 130
           V+KSAK SFCECK
Sbjct: 121 VRKSAKRSFCECK 133

[Close]

BLAST of Cp4.1LG01g14440 vs. ExPASy TrEMBL
Match: A0A1S3BFF9 (cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucumis melo OX=3656 GN=LOC103489420 PE=4 SV=1)

HSP 1 Score: 208 bits (529), Expect = 4.33e-67
Identity = 105/133 (78.95%), Postives = 117/133 (87.97%), Query Frame = 0


Query: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSS--MAADHGGVIIQKERNDK-IDGGAEELCC 60
           MST+LDLRRTLLE+VRRP IKLQIP P ++  M  D GGVIIQK+R DK  DGGAEELCC
Sbjct: 1   MSTELDLRRTLLEIVRRPPIKLQIPLPSTAVVMGGDRGGVIIQKDRIDKGEDGGAEELCC 60

Query: 61  RTPTSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENR 120
           RTPTSAENKIP V+QCPPAPRKRKRPP+CRRRL+ELEFVEIV R+EIEPY  +SFDHE+R
Sbjct: 61  RTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVEIVHRDEIEPYLNASFDHEDR 120

Query: 121 VKKSAKISFCECK 130
           V+KSAK SFCECK
Sbjct: 121 VRKSAKRSFCECK 133

[Close]

BLAST of Cp4.1LG01g14440 vs. TAIR 10
Match: AT3G10525.1 (LOSS OF GIANT CELLS FROM ORGANS )

HSP 1 Score: 57.8 bits (138), Expect = 7.7e-09
Identity = 31/92 (33.70%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 42  KERNDKIDGGAEELCCRTPTSAENKIPVVLQCPPAPRKRKRPP-------------TCRR 101
           K + D+ D   ++L C TPTS E+KIP V+  PP P ++ RPP             +C+R
Sbjct: 26  KTKKDEGDDDEDDLRCSTPTSQEHKIPAVVDSPPPPPRKPRPPPSAPSATAALMIRSCKR 85

Query: 102 RLIELEFVEIVSREEIEPYFTSSFDHENRVKK 121
           +L+      I++REEI+ +F+S ++  +   K
Sbjct: 86  KLLVSTCEIIMNREEIDRFFSSVYNETSTTAK 117

[Close]

BLAST of Cp4.1LG01g14440 vs. TAIR 10
Match: AT5G40460.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.5 bits (114), Expect = 4.7e-06
Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = 0


Query: 53 EELCCRTPTSAENKIPVVLQCPPAPRKRKRPPTCRRRLI 92
          EE C  TPT+ E KIP +L+CPPAPRKR+    CR  ++
Sbjct: 56 EEECSTTPTAKETKIPELLECPPAPRKRRPALKCRSNVV 94

[Close]

BLAST of Cp4.1LG01g14440 vs. TAIR 10
Match: AT5G02420.1 (unknown protein; Has 90 Blast hits to 90 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 3.9e-05
Identity = 34/78 (43.59%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 53  EELCCRTPTSAENKIPVV--LQCPPAPRKRK--RPPTCRRRLIELEFVE---IVSREEIE 112
           EE  C+TPTS+++KIP V    CPPAPRK K  R    +R+L  +  V    I    EIE
Sbjct: 40  EEEGCKTPTSSDHKIPEVKYTLCPPAPRKPKPNRSSGTKRKLTPVNVVNRIPIDLSREIE 99

Query: 113 PYFTSSFDHENRVKKSAK 124
            +F    D + R+KKS K
Sbjct: 100 MFFE---DLDRRIKKSRK 114

[Close]

BLAST of Cp4.1LG01g14440 vs. TAIR 10
Match: AT2G37610.1 (unknown protein; Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 4.4e-04
Identity = 21/39 (53.85%), Postives = 25/39 (64.10%), Query Frame = 0


Query: 58  RTPTSAENKIPVVLQCPPAPRKRK------RPPTCRRRL 91
           +TPT  EN+IP+V +CPPAP KR       R   CRRRL
Sbjct: 97  KTPTRPENRIPIVRECPPAPMKRSSEMFRGRTMYCRRRL 135

[Close]

BLAST of Cp4.1LG01g14440 vs. TAIR 10
Match: AT1G60783.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 7.4e-04
Identity = 17/29 (58.62%), Postives = 22/29 (75.86%), Query Frame = 0


Query: 53 EELCCRTPTSAENKIPVVLQCPPAPRKRK 82
          E+LC  TPT+   +IP V+ CPPAP+KRK
Sbjct: 51 EDLCPTTPTADSVRIPTVIPCPPAPKKRK 79

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g14440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LPP4	1.1e-07	33.70	Cyclin-dependent protein kinase inhibitor SMR1 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q29Q81	6.6e-05	53.85	Cyclin-dependent protein kinase inhibitor SMR6 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9LZ60	5.6e-04	43.59	Cyclin-dependent protein kinase inhibitor SMR3 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Cp4.1LG01g14440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023531359.1	3.62e-88	100.00	cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022957068.1	4.95e-86	98.46	cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita moschata] >KAG660...	[more]
XP_022992922.1	4.07e-85	97.69	cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita maxima]	[more]
XP_038893025.1	2.20e-68	81.54	cyclin-dependent protein kinase inhibitor SMR1-like [Benincasa hispida]	[more]
XP_011655851.1	4.58e-67	78.36	cyclin-dependent protein kinase inhibitor SMR1 [Cucumis sativus] >KGN52223.1 hyp...	[more]

BLAST of Cp4.1LG01g14440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GZ63	2.40e-86	98.46	cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucurbita moschata OX=366...	[more]
A0A6J1JRA3	1.97e-85	97.69	cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucurbita maxima OX=3661 ...	[more]
A0A0A0KRI0	2.22e-67	78.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G621910 PE=4 SV=1	[more]
A0A5D3CD68	4.33e-67	78.95	Cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucumis melo var. makuwa ...	[more]
A0A1S3BFF9	4.33e-67	78.95	cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucumis melo OX=3656 GN=L...	[more]

BLAST of Cp4.1LG01g14440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10525.1	7.7e-09	33.70	LOSS OF GIANT CELLS FROM ORGANS	[more]
AT5G40460.1	4.7e-06	53.85	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G02420.1	3.9e-05	43.59	unknown protein; Has 90 Blast hits to 90 proteins in 10 species: Archae - 0; Bac...	[more]
AT2G37610.1	4.4e-04	53.85	unknown protein; Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bact...	[more]
AT1G60783.1	7.4e-04	58.62	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 27..123
None	No IPR available	PANTHER	PTHR33142:SF57	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR1-LIKE	coord: 27..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g14440.1	Cp4.1LG01g14440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045839	negative regulation of mitotic nuclear division
biological_process	GO:0032875	regulation of DNA endoreduplication
cellular_component	GO:0005634	nucleus