Cp4.1LG01g09910 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g09910
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	mediator of RNA polymerase II transcription subunit 15a-like
Location	Cp4.1LG01: 7001663 .. 7006622 (+)
RNA-Seq Expression	Cp4.1LG01g09910
Synteny	Cp4.1LG01g09910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGCGTTAGAAAGTGAAAAGTGTGACAGACGTTTGGATTTTGTACGGGTTGTTGTAATGGCGCGGATGTGAGCTGTATGCTCTCGAACAACCAATCTGTTCGTCCTCTTCCTTCTTTGTTTGCTTGCTCCTTAAGCATATCACTATATAATGCGCATGAAGATGAGGCAACTCGCCACCATTTCCGATCTCAATCAGTTTGGCTATGGAGGCTTTTCTTCTCGATATGCCCTAAAGGTATTTGTTTAATCGGTTTTTGTTGCGTTTTTTTTTGTTCTTTTTGCCTCAGTATCATCTCTCTGTCAATATCTCTGTAACGCCGGCGCTTGTCTCCGTTTTTTGTGGCATGTGAGTTGGATGATGGTTTTTTACTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTCTTACTTGTGATGGTGTGATGGTGAGTGAAAGTTACCCTACAGTGAAGTTGTGGAACTTCGATTGAATCACATTTTTTAGCTATGTCTTTATGATTGATTGTGTTGCATGTTCAGGTGAAAGGATCTTCGAGATCTATTTGGGCGATTTTTGGAAATTAGCTTACAGGAAGTGGAGGATAATGTTGCCTGGTTTACTTGAAAATGGAAGCGGTAAGGAATTGAGTACCGATTTCTGTTCCTTCAAAACAGTAAAATGAAATTGGATGGCTGTTGAAGTTTCTTTACATGAATGCCTCACTTAGTTATAACTCGATGAAGGCAATTGCTTAAGCCGGGTTTGATTATTATTTTTGTTCTTGGTTTTCTGTTTTCGAAATTAAGCCTATAAAGACTACTTACACTCATAGTTTTGTTACTTTTATCACCTACTTTCTGAAAACGTTTTAAAAACTAAGTCAATTTTTGAAAAATAATCAAAGTAGTTCTTAAATTTTGGCTTTGTTTTGAAATTTGATTTAGAATTCGAATGTGTTTAAAACAAAATGGTCATCGAATGGGGTATTAGTAGTAAAAGTTTTAGGTATCGAGAAATTTCAACTATATACTGTATTCATTCTTTGATCTGCTCAATTAAGTTTGTTCGCTGTGGAAAATTTTTGGAGAAATTGTTTTGAGTACGATGTCTTAGAAATGTTCCTTGTTCAGTAACTACTGGTTGTGACGTTTCTTGGTGGGTTATTGCAAAGAACAAGTTAACCAAGTCGAGGATTTCCAATTATTTTCTTGTATTATCCTGTTTACATTCTCAGCAACTTTTTTTCCTACTAAAGATATGTTTGGGAGTGGTTAAAAGTACTTTTGTCATTTTCATTTCAAAGCATGCCTTAAATTATCACTCCATAATTGTTTTTAAATGATTAAATGTATGTTTTGAAGTGATTTAGAAATGACATAAGTGATTTTAATCCTTTCTAAATCTCTCCCAAAAATGCCCTAAAGTTTTGCCATTGCTTTTGTTAGTTGACTTCGAGAAGGCTTTGGAGAATTTTCTCTACCCACCAATTGTAAATGATGCTGCCCAAGCAGAAAAGGCGTTCATCGTCTCCACCCCTGGAATGTCACCTTCATCCCTTTTGGAGGAGGTAACAGATTCAGATCGTGATAATGACAAGTGCTGTGTTACTCCTCTTCAACGTTTGATTAAGATGGTTCGTTGGAAAAGGTTTTTCAGTTTCATTTCTCTTAAGAACAAATTTTTATGTACATCATAGAAATGCTGTTCTTGGCTCAATCTCAGGTAAACGTAATGTCACCTAAAGCGTTAAGTGCTTCTGTTAGTGACATAGATTCTATTGTCTGTATGACTGATAGAGTACCTTCATCAGCGCCTCTTAACAAGTCAAAAGGTGCAGTTGGCATGGATTTGGCGGGCACCGTTGCATCTCGTCTGAGAAGAAAATGTTCAAGATTTGGAGGCACTAATGGATCAAGGAGAACAAGACACTACAGATGTTTGATGGATTGTGAAGGCTTTGACTTGAGTTCATTATTTACTCAAAGGTCAAGAATAACTGAGGTGAGTGGCCATATATTTGCTTCTTTTTTTGTCCCGTTAAATTTTTTTGTGGAGAATCGAATCATCAACCCTTGGGATGGTAATTGGTGTTTCATTCACTGAGTTATGTTGGATTAACGACTATCTATTTGGTTTATATCTATGATTTGAACTTGAAAGATAAAATTGCATGAGGGAACCAATAAGTGCTTTTCGCAAATGTGATCATGAACTGCCAATTAGTAATAACTGTGAGCTTAATTTTGATAAATTTTGTAAATATTCTATTTGATTAATTTGAAAAAATAAAGTGTGAAGCACTTTACTCATGAATGTGAAATTAACTTTACACCTCAAAAGTGATTAACAAGATCCATCGATGATAGTTTTGACCCGATCCTTTATTTTATTTGATACATCTTGACTGATGCATAGAATCGATATATGAAGGATAAAATGTATGAGAAATTATAATGTCTAAATTATATATACCATATTCTTTCAAAAGTTGCAATATTACTCTTGACCTTTCATTAACATTTCGAAACTATCCTTACTTAGAAATACTTTGGAATTTCGAATGGAAATGGGGGCTAAGAAAGGTGTGGCAATGACCTAGAACAATTCGGTGATTCAAACTTTCATTTTAGGTCACCTCTCACCGTTTCATACTCCAACTTCCATTCAAATTTTAAAGGAATTCTACTCCAAAGGTAGGGTTGAAACGTTTGTGAAAGATGAAGTGTAATATTGTAACTTTTGAAAGAATAAATGTATTTTAATAGAAAATTTTAGGGGGTAATTTTTATATTTCATTGTTATAATATCTTGAACACAATTAGTCTTGTAGGATCAAACAACTACTTTGTTCAATTTCAGATAGATATTCTTTATAAACTTCCTATTATTGACGACATATTTCTTTGATATTCTTTCAAATGCATATGTTAATATAGACTCCCAAACATTCGAATTGGCATGGGTTTTCATTGCCGGTGAAGCAATCTTTATTGGAAGAAATTAGGAGGATAAATGAGCAGCTGATTTATACAGAGGTGTCTATTTGTGACAAAGATATGGTAACGACGGATTCTGCAGCTACAATTGGCAGAAGTGAAGGGATCTTAGTCGAATGTTCTTTTGGTGCTGTGTGTACCCTTTCACATTTAATCTCACCCCAAACTTCAGCTGTTCAGGTACTTGAGCCAATTTATATTTAATATGATTTGTTATTTCAAATATTATTTTGGTTCATGTACTTTTAGCTTTGATTCATTTGGTACATGTATGTTTAAAATGTTTATTTTGGTACATGTACTTTCAACTTTAGTTCATTTTGGTCCTATACTTTTAAAAAGCGATCATTTTGGTCCCTTCATTTTCATTTTTATCCTTTTTTTAATCAAAATTTTGGCATTACACTTTGTAAATTTGTATTAAAGAGTTTCTTTAATCTTCTTAAAGTATAGCCATAAATTCATAAATTTGTATTAAAGAGTTTCAATTGTGTATAAAATTTTTGTTAAAACTTTGAAATGGAATCAAAATGGTCACTATTCAAAAGTACATTGACTAAAATAAGCGTTTTGAGTGCACATGGACCAGAATGAGCAAAAGTTGAAAGTAAATATTTTAAAAGTAAACCAAAACTAAAGGTAAAAGGACCAAATTTGTACTTAAACCTAGTATTAATTACTCCACTCCATCTTTATTATTTTATTCATATGATATGCAGTTGGCAATGCATCCCTTAAAGTTGCTTGTTCCCATAGGCTATCCGCACATTTCTCCAATATTCAAGATGGAAGCTTGGTAAGAGGATTTATCCTTTCTCCTATTTAATAGCAAGAATTCACTTATGATACCATCATATGATTTGAGCTTTTATACTTGAGGTTCTTATTTCCCTTTTGCAACATCCAATCCTTCATTTGATTTTGGCTTTGCTATTCATGCATTGTCGTCGAGTCGGGTCACGCTTAAATGATTATTAGATGAGCCTTTTTTGGTTGATATTGATTTTCTAGTTTATTAGATTCACATTTTTTTGCAACCTTATTAATTTATGGGAACCACAATGAATCAAAAGGGCGCGCACACAAGAATGTGGTATACATCTAAAGATCTTGAATTTGAGTTGGACAACTCTGTCGATTAGGAGAGCAAGGCTTAACTAGTTTGGTCGAGGGTATATATCTCATTTAACTGGTTGAGTTATGCTCCTATTGACGTTCATGAAGTGTTTTCAATTGGTACTTTCGCTCAAATGCATTGATCATTCGACTTTTCGGCTATAAAAGTTTATAAGCCCATTAAGACCACTTAATATGTCCATTGGAAAACACTTCTAATAGTTGTACGAGAACTTTACTCTGAATTCGTAGTTTATTGGACTTTCTATTCTCAAGAATCTCAAACCATAACACATTTCATCCTTTAACTTATAAATTCACTTCTTTTTTTCAGTCCAACAGGTTGCGAAGACCTTTCATTGCAGGCAAGGGAAAAGTTCAACATGTCTGTCCGAAGCCTTGCACATCCATTCTCTATAAGTGAAGTGGCCAGGACATGGGACATGTGTGCTCGAGACGTCATTTCGGAGTATGCTCGACAGAACGGAGGTGGCAGTTTTAGTTCAAAGTATGGCTCGTGGGAGGACTGTCTTCATACTGCTTGGTCATAACAAATAAGCATATAGCAACAACTGCCATTGAAGGATGGTTGTAATGGGTGAACTTCACTTCTCTAATCCTTTTATTTTAATGGCATTGAGAGAAAACTAAGTGAGAGACTTCATTTGAAATCTAATGGTTGGGTTTTGGGTTTGAGGGGTGAGGGAAGTTGCATCTCTTGCACATTTCGCTTCGGAAAAAGCCAAAAATCTTGTTAGGCTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAATGTGTTCATCAAATTAGGGTCTGAGA

mRNA sequence

TGGGCGTTAGAAAGTGAAAAGTGTGACAGACGTTTGGATTTTGTACGGGTTGTTGTAATGGCGCGGATGTGAGCTGTATGCTCTCGAACAACCAATCTGTTCGTCCTCTTCCTTCTTTGTTTGCTTGCTCCTTAAGCATATCACTATATAATGCGCATGAAGATGAGGCAACTCGCCACCATTTCCGATCTCAATCAGTTTGGCTATGGAGGCTTTTCTTCTCGATATGCCCTAAAGGTGAAAGGATCTTCGAGATCTATTTGGGCGATTTTTGGAAATTAGCTTACAGGAAGTGGAGGATAATGTTGCCTGGTTTACTTGAAAATGGAAGCGAAAAGGCGTTCATCGTCTCCACCCCTGGAATGTCACCTTCATCCCTTTTGGAGGAGGTAACAGATTCAGATCGTGATAATGACAAGTGCTGTGTTACTCCTCTTCAACGTTTGATTAAGATGGTAAACGTAATGTCACCTAAAGCGTTAAGTGCTTCTGTTAGTGACATAGATTCTATTGTCTGTATGACTGATAGAGTACCTTCATCAGCGCCTCTTAACAAGTCAAAAGGTGCAGTTGGCATGGATTTGGCGGGCACCGTTGCATCTCGTCTGAGAAGAAAATGTTCAAGATTTGGAGGCACTAATGGATCAAGGAGAACAAGACACTACAGATGTTTGATGGATTGTGAAGGCTTTGACTTGAGTTCATTATTTACTCAAAGTCCAACAGGTTGCGAAGACCTTTCATTGCAGGCAAGGGAAAAGTTCAACATGTCTGTCCGAAGCCTTGCACATCCATTCTCTATAAGTGAAGTGGCCAGGACATGGGACATGTGTGCTCGAGACGTCATTTCGGAGTATGCTCGACAGAACGGAGGTGGCAGTTTTAGTTCAAAGTATGGCTCGTGGGAGGACTGTCTTCATACTGCTTGGTCATAACAAATAAGCATATAGCAACAACTGCCATTGAAGGATGGTTGTAATGGGTGAACTTCACTTCTCTAATCCTTTTATTTTAATGGCATTGAGAGAAAACTAAGTGAGAGACTTCATTTGAAATCTAATGGTTGGGTTTTGGGTTTGAGGGGTGAGGGAAGTTGCATCTCTTGCACATTTCGCTTCGGAAAAAGCCAAAAATCTTGTTAGGCTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAATGTGTTCATCAAATTAGGGTCTGAGA

Coding sequence (CDS)

ATGCTCTCGAACAACCAATCTGTTCGTCCTCTTCCTTCTTTGTTTGCTTGCTCCTTAAGCATATCACTATATAATGCGCATGAAGATGAGGCAACTCGCCACCATTTCCGATCTCAATCAGTTTGGCTATGGAGGCTTTTCTTCTCGATATGCCCTAAAGGTGAAAGGATCTTCGAGATCTATTTGGGCGATTTTTGGAAATTAGCTTACAGGAAGTGGAGGATAATGTTGCCTGGTTTACTTGAAAATGGAAGCGAAAAGGCGTTCATCGTCTCCACCCCTGGAATGTCACCTTCATCCCTTTTGGAGGAGGTAACAGATTCAGATCGTGATAATGACAAGTGCTGTGTTACTCCTCTTCAACGTTTGATTAAGATGGTAAACGTAATGTCACCTAAAGCGTTAAGTGCTTCTGTTAGTGACATAGATTCTATTGTCTGTATGACTGATAGAGTACCTTCATCAGCGCCTCTTAACAAGTCAAAAGGTGCAGTTGGCATGGATTTGGCGGGCACCGTTGCATCTCGTCTGAGAAGAAAATGTTCAAGATTTGGAGGCACTAATGGATCAAGGAGAACAAGACACTACAGATGTTTGATGGATTGTGAAGGCTTTGACTTGAGTTCATTATTTACTCAAAGTCCAACAGGTTGCGAAGACCTTTCATTGCAGGCAAGGGAAAAGTTCAACATGTCTGTCCGAAGCCTTGCACATCCATTCTCTATAAGTGAAGTGGCCAGGACATGGGACATGTGTGCTCGAGACGTCATTTCGGAGTATGCTCGACAGAACGGAGGTGGCAGTTTTAGTTCAAAGTATGGCTCGTGGGAGGACTGTCTTCATACTGCTTGGTCATAA

Protein sequence

MLSNNQSVRPLPSLFACSLSISLYNAHEDEATRHHFRSQSVWLWRLFFSICPKGERIFEIYLGDFWKLAYRKWRIMLPGLLENGSEKAFIVSTPGMSPSSLLEEVTDSDRDNDKCCVTPLQRLIKMVNVMSPKALSASVSDIDSIVCMTDRVPSSAPLNKSKGAVGMDLAGTVASRLRRKCSRFGGTNGSRRTRHYRCLMDCEGFDLSSLFTQSPTGCEDLSLQAREKFNMSVRSLAHPFSISEVARTWDMCARDVISEYARQNGGGSFSSKYGSWEDCLHTAWS

Homology

[Close]

BLAST of Cp4.1LG01g09910 vs. ExPASy Swiss-Prot
Match: F4I171 (Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana OX=3702 GN=MED15A PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.2e-20
Identity = 91/329 (27.66%), Postives = 127/329 (38.60%), Query Frame = 0


Query: 84   GSEKAFIVSTPGMSPSSLLEEVTDSDRD----------NDKCCVTPLQRLIKMVNVMSPK 143
            G  ++  + TPG+S S LL+E T  D +                 P++RLI+ V  +SP+
Sbjct: 1001 GVVQSLAIGTPGISASPLLQEFTSPDGNILNSSTITSGKPSATELPIERLIRAVKSISPQ 1060

Query: 144  ALSASVSDIDSIVCMTDRVPSSAPLNKSKGAVGMDLAGTVASRLRRK------------- 203
            ALS++VSDI S+V M DR+  SAP N S+ +VG DL      RL+ +             
Sbjct: 1061 ALSSAVSDIGSVVSMVDRIAGSAPGNGSRASVGEDLVAMTKCRLQARNFMTQEGMMATKK 1120

Query: 204  -----------CSRFGGTNGSR-----------------------RTRHYRCLMD----- 263
                        +  GG+ G                         RT     L++     
Sbjct: 1121 MKRHTTAMPLSVASLGGSVGDNYKQFAGSETSDLESTATSDGKKARTETEHALLEEIKEI 1180

Query: 264  -----------------------------CEGFDLSSLF---------------TQS--- 278
                                         CEG  +   F               TQ    
Sbjct: 1181 NQRLIDTVVEISDDEDAADPSEVAISSIGCEGTTVRFSFIAVSLSPALKAHLSSTQMSPI 1240

[Close]

BLAST of Cp4.1LG01g09910 vs. ExPASy Swiss-Prot
Match: Q9SHV7 (Probable mediator of RNA polymerase II transcription subunit 15c OS=Arabidopsis thaliana OX=3702 GN=MED15C PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 6.0e-11
Identity = 29/65 (44.62%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 219 EDLSLQAREKFNMSVRSLAHPFSISEVARTWDMCARDVISEYARQNGGGSFSSKYGSWED 278
           EDLS + R +F++S++  + P     +A+TW+ CAR  + EYA ++GGG+FSSKYG+WE 
Sbjct: 871 EDLSARTRSRFSLSMKEFSEPGFSKGIAQTWNDCARATMVEYAERHGGGTFSSKYGAWET 930

Query: 279 CLHTA 284
            L  +
Sbjct: 931 VLRAS 935

[Close]

BLAST of Cp4.1LG01g09910 vs. ExPASy Swiss-Prot
Match: F4I169 (Probable mediator of RNA polymerase II transcription subunit 15b OS=Arabidopsis thaliana OX=3702 GN=MED15B PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.8e-08
Identity = 35/110 (31.82%), Postives = 57/110 (51.82%), Query Frame = 0


Query: 81  LENGSEKAFIVSTPGMSPSSLLEEVTDSDRD----------NDKCCVTPLQRLIKMVNVM 140
           +  G  ++  + TPG+S S LL E+T  D +                 P++RLI+ +  +
Sbjct: 144 IRQGVLQSLEIGTPGISASPLLPELTSPDGNIINPLTSTCGKSSATELPIERLIRAMKSI 203

Query: 141 SPKALSASVSDIDSIVCMTDRVPSSAPLNKSKGAVGMDLAGTVASRLRRK 181
           SP+ALS++V DI S+V M DR+  S P   S+ + G+DL       L+ +
Sbjct: 204 SPQALSSAVCDIRSVVSMVDRIAGSVPGKGSRASFGVDLVAMTKCHLQER 253

[Close]

BLAST of Cp4.1LG01g09910 vs. NCBI nr
Match: XP_023526658.1 (mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita pepo subsp. pepo] >XP_023526666.1 mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 525 bits (1351), Expect = 6.30e-185
Identity = 284/418 (67.94%), Postives = 284/418 (67.94%), Query Frame = 0


Query: 1   MLSNNQSVRPLPSLFACSLSISLYNAHEDEATRHHFRSQSVWLWRLFFSICPKGERIFEI 60
           MLSNNQSVRPLPSLFACSLSISLYNAHEDEATRHHFRSQSVWLWRLFFSICPKGERIFEI
Sbjct: 1   MLSNNQSVRPLPSLFACSLSISLYNAHEDEATRHHFRSQSVWLWRLFFSICPKGERIFEI 60

Query: 61  YLGDFWKLAYRKWRIMLPGLLENGS----------------------EKAFIVSTPGMSP 120
           YLGDFWKLAYRKWRIMLPGLLENGS                      EKAFIVSTPGMSP
Sbjct: 61  YLGDFWKLAYRKWRIMLPGLLENGSVDFEKALENFLYPPIVNDAAQAEKAFIVSTPGMSP 120

Query: 121 SSLLEEVTDSDRDNDKCCVTPLQRLIKMVNVMSPKALSASVSDIDSIVCMTDRVPSSAPL 180
           SSLLEEVTDSDRDNDKCCVTPLQRLIKMVNVMSPKALSASVSDIDSIVCMTDRVPSSAPL
Sbjct: 121 SSLLEEVTDSDRDNDKCCVTPLQRLIKMVNVMSPKALSASVSDIDSIVCMTDRVPSSAPL 180

Query: 181 NKSKGAVGMDLAGTVASRLRRKCSRFGGTNGSRRTRHYRCLMDCEGFDLSSLFTQS---- 240
           NKSKGAVGMDLAGTVASRLRRKCSRFGGTNGSRRTRHYRCLMDCEGFDLSSLFTQ     
Sbjct: 181 NKSKGAVGMDLAGTVASRLRRKCSRFGGTNGSRRTRHYRCLMDCEGFDLSSLFTQRSRIT 240

Query: 241 ------------------------------------------------------------ 285
                                                                       
Sbjct: 241 ETPKHSNWHGFSLPVKQSLLEEIRRINEQLIYTEVSICDKDMVTTDSAATIGRSEGILVE 300

[Close]

BLAST of Cp4.1LG01g09910 vs. NCBI nr
Match: XP_022984739.1 (mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita maxima])

HSP 1 Score: 517 bits (1331), Expect = 6.96e-182
Identity = 281/418 (67.22%), Postives = 282/418 (67.46%), Query Frame = 0


Query: 1   MLSNNQSVRPLPSLFACSLSISLYNAHEDEATRHHFRSQSVWLWRLFFSICPKGERIFEI 60
           MLSNNQSVRPLPSLFACSLSISLYNAHEDEATRHHFRSQSVWLWRLFFSICPKGERIFEI
Sbjct: 1   MLSNNQSVRPLPSLFACSLSISLYNAHEDEATRHHFRSQSVWLWRLFFSICPKGERIFEI 60

Query: 61  YLGDFWKLAYRKWRIMLPGLLENGS----------------------EKAFIVSTPGMSP 120
           YLGDFWKLAYRKWRIMLPGLLENGS                      EKAFIVSTPGMSP
Sbjct: 61  YLGDFWKLAYRKWRIMLPGLLENGSVDFEKALEDFLYPPIVNDAAQAEKAFIVSTPGMSP 120

Query: 121 SSLLEEVTDSDRDNDKCCVTPLQRLIKMVNVMSPKALSASVSDIDSIVCMTDRVPSSAPL 180
           SSLLEEVTDSDRDNDKCCVTPLQRLIKMVNVMSPKALSASVSDIDSIVCMTDRV SSAPL
Sbjct: 121 SSLLEEVTDSDRDNDKCCVTPLQRLIKMVNVMSPKALSASVSDIDSIVCMTDRVSSSAPL 180

Query: 181 NKSKGAVGMDLAGTVASRLRRKCSRFGGTNGSRRTRHYRCLMDCEGFDLSSLFTQS---- 240
           NKSKGAVGMDLAGTVASRLRRKCSRFGGT GSRRTRHYRCLMDCEGFDLSSLFTQ     
Sbjct: 181 NKSKGAVGMDLAGTVASRLRRKCSRFGGTIGSRRTRHYRCLMDCEGFDLSSLFTQRSRII 240

Query: 241 ------------------------------------------------------------ 285
                                                                       
Sbjct: 241 ETPKHSNWHGFSLPVKQSLLEEIRRINEQLIYTEVSICDKDMVTTDPAATIGKSEGILVE 300

[Close]

BLAST of Cp4.1LG01g09910 vs. NCBI nr
Match: XP_022956517.1 (mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita moschata] >XP_022956518.1 mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita moschata])

HSP 1 Score: 514 bits (1323), Expect = 1.15e-180
Identity = 280/418 (66.99%), Postives = 281/418 (67.22%), Query Frame = 0


Query: 1   MLSNNQSVRPLPSLFACSLSISLYNAHEDEATRHHFRSQSVWLWRLFFSICPKGERIFEI 60
           MLSNNQSVRPLPSLFACSLSIS+YNAHEDEATRHHFRSQSVWLWRLFFSICPKGERIFEI
Sbjct: 1   MLSNNQSVRPLPSLFACSLSISVYNAHEDEATRHHFRSQSVWLWRLFFSICPKGERIFEI 60

Query: 61  YLGDFWKLAYRKWRIMLPGLLENGS----------------------EKAFIVSTPGMSP 120
           YLGDFWKLAY KWRIMLPGLLENGS                      EKAFIVSTPGMSP
Sbjct: 61  YLGDFWKLAYWKWRIMLPGLLENGSVDFEKALENFLYPPIVNDAAQAEKAFIVSTPGMSP 120

Query: 121 SSLLEEVTDSDRDNDKCCVTPLQRLIKMVNVMSPKALSASVSDIDSIVCMTDRVPSSAPL 180
           SSLLEEVTDSDRDNDKCCVTPLQRLIKMVNVMSPKALSASVSDIDSIVCMTDRV SSAPL
Sbjct: 121 SSLLEEVTDSDRDNDKCCVTPLQRLIKMVNVMSPKALSASVSDIDSIVCMTDRVSSSAPL 180

Query: 181 NKSKGAVGMDLAGTVASRLRRKCSRFGGTNGSRRTRHYRCLMDCEGFDLSSLFTQS---- 240
           NKSKGAVGMDLAGTVASRLRRKCSRFGGT GSRRTRHYRCLMDCEGFDLSSLFTQ     
Sbjct: 181 NKSKGAVGMDLAGTVASRLRRKCSRFGGTIGSRRTRHYRCLMDCEGFDLSSLFTQRSRII 240

Query: 241 ------------------------------------------------------------ 285
                                                                       
Sbjct: 241 ETPKHSNWHGFSLPVKQSLLEEIRRINEQLIYTEVSICDKDMVTTDPGATIGRSEGILVE 300

[Close]

BLAST of Cp4.1LG01g09910 vs. NCBI nr
Match: KAG6601093.1 (Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 513 bits (1320), Expect = 3.28e-180
Identity = 279/418 (66.75%), Postives = 280/418 (66.99%), Query Frame = 0


Query: 1   MLSNNQSVRPLPSLFACSLSISLYNAHEDEATRHHFRSQSVWLWRLFFSICPKGERIFEI 60
           MLSNNQSVRPLPSLFACSLSI LYNAHEDEATRHHFRSQSVWLWRLFFSICPKGERIFE+
Sbjct: 1   MLSNNQSVRPLPSLFACSLSIPLYNAHEDEATRHHFRSQSVWLWRLFFSICPKGERIFEV 60

Query: 61  YLGDFWKLAYRKWRIMLPGLLENGS----------------------EKAFIVSTPGMSP 120
           YLGDFWKLAY KWRIMLPGLLENGS                      EKAFIVSTPGMSP
Sbjct: 61  YLGDFWKLAYWKWRIMLPGLLENGSVDFEKALENFLYPPIVNDAAQAEKAFIVSTPGMSP 120

Query: 121 SSLLEEVTDSDRDNDKCCVTPLQRLIKMVNVMSPKALSASVSDIDSIVCMTDRVPSSAPL 180
           SSLLEEVTDSDRDNDKCCVTPLQRLIKMVNVMSPKALSASVSDIDSIVCMTDRV SSAPL
Sbjct: 121 SSLLEEVTDSDRDNDKCCVTPLQRLIKMVNVMSPKALSASVSDIDSIVCMTDRVSSSAPL 180

Query: 181 NKSKGAVGMDLAGTVASRLRRKCSRFGGTNGSRRTRHYRCLMDCEGFDLSSLFTQS---- 240
           NKSKGAVGMDLAGTVASRLRRKCSRFGGT GSRRTRHYRCLMDCEGFDLSSLFTQ     
Sbjct: 181 NKSKGAVGMDLAGTVASRLRRKCSRFGGTIGSRRTRHYRCLMDCEGFDLSSLFTQRSRII 240

Query: 241 ------------------------------------------------------------ 285
                                                                       
Sbjct: 241 ETPKHSNWHGFSLPVKQSLLEEIRRINEQLIYTEVSICDKDMVTTDPGATIGRSEGILVE 300

[Close]

BLAST of Cp4.1LG01g09910 vs. NCBI nr
Match: KAG7031897.1 (Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 358 bits (920), Expect = 8.64e-121
Identity = 197/295 (66.78%), Postives = 198/295 (67.12%), Query Frame = 0


Query: 85  SEKAFIVSTPGMSPSSLLEEVTDSDRDNDKCCVTPLQRLIKMVNVMSPKALSASVSDIDS 144
           +EKAFIVSTPGMSPSSLLEEVTDSDRDNDKCCVTPLQRLIKMVNVMSPKALSASVSDIDS
Sbjct: 32  AEKAFIVSTPGMSPSSLLEEVTDSDRDNDKCCVTPLQRLIKMVNVMSPKALSASVSDIDS 91

Query: 145 IVCMTDRVPSSAPLNKSKGAVGMDLAGTVASRLRRKCSRFGGTNGSRRTRHYRCLMDCEG 204
           IVCMTDRV SSAPLNKSKGAVGMDLAGTVASRLRRKCSRFGGT GSRRTRHYRCLMDCEG
Sbjct: 92  IVCMTDRVSSSAPLNKSKGAVGMDLAGTVASRLRRKCSRFGGTIGSRRTRHYRCLMDCEG 151

Query: 205 FDLSSLFTQS-------------------------------------------------- 264
           FDLSSLFTQ                                                   
Sbjct: 152 FDLSSLFTQRSRIIETPKHSNWHGFSLPVKQSLLEEIRRINEQLIYTEVSICDKDMVTTD 211

Query: 265 --------------------------------------------PTGCEDLSLQAREKFN 285
                                                       PTGCEDLSLQAREKFN
Sbjct: 212 PGATIGRSEGILVECSFGAVCTLSHLISHQTSAIQNLALHFVNIPTGCEDLSLQAREKFN 271

[Close]

BLAST of Cp4.1LG01g09910 vs. ExPASy TrEMBL
Match: A0A6J1JBE6 (mediator of RNA polymerase II transcription subunit 15a-like OS=Cucurbita maxima OX=3661 GN=LOC111482923 PE=4 SV=1)

HSP 1 Score: 517 bits (1331), Expect = 3.37e-182
Identity = 281/418 (67.22%), Postives = 282/418 (67.46%), Query Frame = 0


Query: 1   MLSNNQSVRPLPSLFACSLSISLYNAHEDEATRHHFRSQSVWLWRLFFSICPKGERIFEI 60
           MLSNNQSVRPLPSLFACSLSISLYNAHEDEATRHHFRSQSVWLWRLFFSICPKGERIFEI
Sbjct: 1   MLSNNQSVRPLPSLFACSLSISLYNAHEDEATRHHFRSQSVWLWRLFFSICPKGERIFEI 60

Query: 61  YLGDFWKLAYRKWRIMLPGLLENGS----------------------EKAFIVSTPGMSP 120
           YLGDFWKLAYRKWRIMLPGLLENGS                      EKAFIVSTPGMSP
Sbjct: 61  YLGDFWKLAYRKWRIMLPGLLENGSVDFEKALEDFLYPPIVNDAAQAEKAFIVSTPGMSP 120

Query: 121 SSLLEEVTDSDRDNDKCCVTPLQRLIKMVNVMSPKALSASVSDIDSIVCMTDRVPSSAPL 180
           SSLLEEVTDSDRDNDKCCVTPLQRLIKMVNVMSPKALSASVSDIDSIVCMTDRV SSAPL
Sbjct: 121 SSLLEEVTDSDRDNDKCCVTPLQRLIKMVNVMSPKALSASVSDIDSIVCMTDRVSSSAPL 180

Query: 181 NKSKGAVGMDLAGTVASRLRRKCSRFGGTNGSRRTRHYRCLMDCEGFDLSSLFTQS---- 240
           NKSKGAVGMDLAGTVASRLRRKCSRFGGT GSRRTRHYRCLMDCEGFDLSSLFTQ     
Sbjct: 181 NKSKGAVGMDLAGTVASRLRRKCSRFGGTIGSRRTRHYRCLMDCEGFDLSSLFTQRSRII 240

Query: 241 ------------------------------------------------------------ 285
                                                                       
Sbjct: 241 ETPKHSNWHGFSLPVKQSLLEEIRRINEQLIYTEVSICDKDMVTTDPAATIGKSEGILVE 300

[Close]

BLAST of Cp4.1LG01g09910 vs. ExPASy TrEMBL
Match: A0A6J1GWK1 (mediator of RNA polymerase II transcription subunit 15a-like OS=Cucurbita moschata OX=3662 GN=LOC111458234 PE=4 SV=1)

HSP 1 Score: 514 bits (1323), Expect = 5.56e-181
Identity = 280/418 (66.99%), Postives = 281/418 (67.22%), Query Frame = 0


Query: 1   MLSNNQSVRPLPSLFACSLSISLYNAHEDEATRHHFRSQSVWLWRLFFSICPKGERIFEI 60
           MLSNNQSVRPLPSLFACSLSIS+YNAHEDEATRHHFRSQSVWLWRLFFSICPKGERIFEI
Sbjct: 1   MLSNNQSVRPLPSLFACSLSISVYNAHEDEATRHHFRSQSVWLWRLFFSICPKGERIFEI 60

Query: 61  YLGDFWKLAYRKWRIMLPGLLENGS----------------------EKAFIVSTPGMSP 120
           YLGDFWKLAY KWRIMLPGLLENGS                      EKAFIVSTPGMSP
Sbjct: 61  YLGDFWKLAYWKWRIMLPGLLENGSVDFEKALENFLYPPIVNDAAQAEKAFIVSTPGMSP 120

Query: 121 SSLLEEVTDSDRDNDKCCVTPLQRLIKMVNVMSPKALSASVSDIDSIVCMTDRVPSSAPL 180
           SSLLEEVTDSDRDNDKCCVTPLQRLIKMVNVMSPKALSASVSDIDSIVCMTDRV SSAPL
Sbjct: 121 SSLLEEVTDSDRDNDKCCVTPLQRLIKMVNVMSPKALSASVSDIDSIVCMTDRVSSSAPL 180

Query: 181 NKSKGAVGMDLAGTVASRLRRKCSRFGGTNGSRRTRHYRCLMDCEGFDLSSLFTQS---- 240
           NKSKGAVGMDLAGTVASRLRRKCSRFGGT GSRRTRHYRCLMDCEGFDLSSLFTQ     
Sbjct: 181 NKSKGAVGMDLAGTVASRLRRKCSRFGGTIGSRRTRHYRCLMDCEGFDLSSLFTQRSRII 240

Query: 241 ------------------------------------------------------------ 285
                                                                       
Sbjct: 241 ETPKHSNWHGFSLPVKQSLLEEIRRINEQLIYTEVSICDKDMVTTDPGATIGRSEGILVE 300

[Close]

BLAST of Cp4.1LG01g09910 vs. ExPASy TrEMBL
Match: A0A6J1CCM7 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111010000 PE=4 SV=1)

HSP 1 Score: 261 bits (666), Expect = 3.65e-82
Identity = 152/320 (47.50%), Postives = 174/320 (54.37%), Query Frame = 0


Query: 86  EKAFIVSTPGMSPSSLLEEVTDSDRDNDKCCVTPLQRLIKMVNVMSPKALSASVSDIDSI 145
           EK FI+STPGMSPS+LLEEV++SDRDND C VTPLQRL+KMVNVMSPKALSAS+SDIDSI
Sbjct: 41  EKPFIISTPGMSPSALLEEVSESDRDNDICSVTPLQRLLKMVNVMSPKALSASISDIDSI 100

Query: 146 VCMTDRVPSSAPLNKSKGAVGMDLAGTVASRLRRKCSRFGGTNGSRRTRHYRC------- 205
           VCMTDRV SSAPLNKSK  +  DL GTV SRLR++CS FGG+ GSRRTRH R        
Sbjct: 101 VCMTDRVASSAPLNKSKAEISEDLVGTVTSRLRKRCSIFGGSTGSRRTRHCRNTRMYTSS 160

Query: 206 --LMDCEGFDLSSLFTQS------------------------------------------ 265
             +M CE +DL+S FT+                                           
Sbjct: 161 RRMMYCESYDLNSTFTERSRIETPEHSHWRGFSLPFKQYLLEEIRKINEQLIDTVVSVCD 220

Query: 266 ------------------------------------------------------------ 283
                                                                       
Sbjct: 221 KDMITTDNAATNDRSEGIIVECSFAAMRISSNKISQQASALQLTVHPLKLLVPKGYPHCS 280

[Close]

BLAST of Cp4.1LG01g09910 vs. ExPASy TrEMBL
Match: A0A6J1CEI3 (mediator of RNA polymerase II transcription subunit 15a-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111010000 PE=4 SV=1)

HSP 1 Score: 189 bits (479), Expect = 6.20e-55
Identity = 97/137 (70.80%), Postives = 111/137 (81.02%), Query Frame = 0


Query: 86  EKAFIVSTPGMSPSSLLEEVTDSDRDNDKCCVTPLQRLIKMVNVMSPKALSASVSDIDSI 145
           EK FI+STPGMSPS+LLEEV++SDRDND C VTPLQRL+KMVNVMSPKALSAS+SDIDSI
Sbjct: 41  EKPFIISTPGMSPSALLEEVSESDRDNDICSVTPLQRLLKMVNVMSPKALSASISDIDSI 100

Query: 146 VCMTDRVPSSAPLNKSKGAVGMDLAGTVASRLRRKCSRFGGTNGSRRTRHYRC------- 205
           VCMTDRV SSAPLNKSK  +  DL GTV SRLR++CS FGG+ GSRRTRH R        
Sbjct: 101 VCMTDRVASSAPLNKSKAEISEDLVGTVTSRLRKRCSIFGGSTGSRRTRHCRNTRMYTSS 160

Query: 206 --LMDCEGFDLSSLFTQ 213
             +M CE +DL+S FT+
Sbjct: 161 RRMMYCESYDLNSTFTE 177

[Close]

BLAST of Cp4.1LG01g09910 vs. ExPASy TrEMBL
Match: A0A5B7BEL5 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_036768 PE=4 SV=1)

HSP 1 Score: 143 bits (361), Expect = 1.23e-35
Identity = 106/299 (35.45%), Postives = 135/299 (45.15%), Query Frame = 0


Query: 87  KAFIVSTPGMSPSSLLEEVTDSDRDN--------DKCCVT--PLQRLIKMVNVMSPKALS 146
           ++  + TPG+SPS LL E T  D ++         K  VT  PL+RLIK+V  MSPKALS
Sbjct: 199 QSLAIGTPGISPSPLLAEFTSPDANHANASTVVSGKSSVTEQPLERLIKVVKSMSPKALS 258

Query: 147 ASVSDIDSIVCMTDRVPSSAPLNKSKGAVGMDLAGTVASRLR-RKCSRFGGTNGSRRTRH 206
           ASVSDI S+V M DR+  SAP N S+ AVG DL      RL+ R      G  G+R+ R 
Sbjct: 259 ASVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITQDGNTGTRKMRR 318

Query: 207 YRCLMDC-------------------EGFDLSSLFTQS---------------------- 266
           Y   M                     E  DL S  T S                      
Sbjct: 319 YTSAMPLNVVSSAGSINDSFKQLTGSEASDLESTATSSIKRPRIEANHALLEEIREINQQ 378

Query: 267 --------------PTGC---------------------------------------EDL 280
                         P                                          EDL
Sbjct: 379 LIDTVVDISDEDVDPATAAAAAAEGGEGTIVKCSFSAVALXSPILLDKFPIEVSKEYEDL 438

[Close]

BLAST of Cp4.1LG01g09910 vs. TAIR 10
Match: AT1G15780.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). )

HSP 1 Score: 100.5 bits (249), Expect = 2.3e-21
Identity = 91/329 (27.66%), Postives = 127/329 (38.60%), Query Frame = 0


Query: 84   GSEKAFIVSTPGMSPSSLLEEVTDSDRD----------NDKCCVTPLQRLIKMVNVMSPK 143
            G  ++  + TPG+S S LL+E T  D +                 P++RLI+ V  +SP+
Sbjct: 1001 GVVQSLAIGTPGISASPLLQEFTSPDGNILNSSTITSGKPSATELPIERLIRAVKSISPQ 1060

Query: 144  ALSASVSDIDSIVCMTDRVPSSAPLNKSKGAVGMDLAGTVASRLRRK------------- 203
            ALS++VSDI S+V M DR+  SAP N S+ +VG DL      RL+ +             
Sbjct: 1061 ALSSAVSDIGSVVSMVDRIAGSAPGNGSRASVGEDLVAMTKCRLQARNFMTQEGMMATKK 1120

Query: 204  -----------CSRFGGTNGSR-----------------------RTRHYRCLMD----- 263
                        +  GG+ G                         RT     L++     
Sbjct: 1121 MKRHTTAMPLSVASLGGSVGDNYKQFAGSETSDLESTATSDGKKARTETEHALLEEIKEI 1180

Query: 264  -----------------------------CEGFDLSSLF---------------TQS--- 278
                                         CEG  +   F               TQ    
Sbjct: 1181 NQRLIDTVVEISDDEDAADPSEVAISSIGCEGTTVRFSFIAVSLSPALKAHLSSTQMSPI 1240

[Close]

BLAST of Cp4.1LG01g09910 vs. TAIR 10
Match: AT2G10440.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 8319 Blast hits to 5104 proteins in 317 species: Archae - 0; Bacteria - 285; Metazoa - 1706; Fungi - 535; Plants - 320; Viruses - 18; Other Eukaryotes - 5455 (source: NCBI BLink). )

HSP 1 Score: 69.7 bits (169), Expect = 4.3e-12
Identity = 29/65 (44.62%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 219 EDLSLQAREKFNMSVRSLAHPFSISEVARTWDMCARDVISEYARQNGGGSFSSKYGSWED 278
           EDLS + R +F++S++  + P     +A+TW+ CAR  + EYA ++GGG+FSSKYG+WE 
Sbjct: 871 EDLSARTRSRFSLSMKEFSEPGFSKGIAQTWNDCARATMVEYAERHGGGTFSSKYGAWET 930

Query: 279 CLHTA 284
            L  +
Sbjct: 931 VLRAS 935

HSP 2 Score: 39.7 bits (91), Expect = 4.7e-03
Identity = 28/77 (36.36%), Postives = 41/77 (53.25%), Query Frame = 0


Query: 119 PLQRLIKMVNVMSPKALSASVSDIDSIVCMTDRVPSSAPLN-KSKGAVGMDLAGTVASRL 178
           P+ RLIK     SPK+L+ SVS+I S++ M D +  S P +  S+  +G DL     S  
Sbjct: 659 PIDRLIKAFQAASPKSLAESVSEISSVISMVDMIGGSFPSSGGSRAGLGEDL-----SER 718

Query: 179 RRKCSRFGGTNGSRRTR 195
            R  +    TN S+R +
Sbjct: 719 TRNFTTHEETNLSKRMK 730

[Close]

BLAST of Cp4.1LG01g09910 vs. TAIR 10
Match: AT2G10440.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 1628 Blast hits to 1350 proteins in 149 species: Archae - 0; Bacteria - 39; Metazoa - 480; Fungi - 159; Plants - 187; Viruses - 2; Other Eukaryotes - 761 (source: NCBI BLink). )

HSP 1 Score: 69.7 bits (169), Expect = 4.3e-12
Identity = 29/65 (44.62%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 219 EDLSLQAREKFNMSVRSLAHPFSISEVARTWDMCARDVISEYARQNGGGSFSSKYGSWED 278
           EDLS + R +F++S++  + P     +A+TW+ CAR  + EYA ++GGG+FSSKYG+WE 
Sbjct: 781 EDLSARTRSRFSLSMKEFSEPGFSKGIAQTWNDCARATMVEYAERHGGGTFSSKYGAWET 840

Query: 279 CLHTA 284
            L  +
Sbjct: 841 VLRAS 845

HSP 2 Score: 39.7 bits (91), Expect = 4.7e-03
Identity = 28/77 (36.36%), Postives = 41/77 (53.25%), Query Frame = 0


Query: 119 PLQRLIKMVNVMSPKALSASVSDIDSIVCMTDRVPSSAPLN-KSKGAVGMDLAGTVASRL 178
           P+ RLIK     SPK+L+ SVS+I S++ M D +  S P +  S+  +G DL     S  
Sbjct: 579 PIDRLIKAFQAASPKSLAESVSEISSVISMVDMIGGSFPSSGGSRAGLGEDL-----SER 638

Query: 179 RRKCSRFGGTNGSRRTR 195
            R  +    TN S+R +
Sbjct: 639 TRNFTTHEETNLSKRMK 650

[Close]

BLAST of Cp4.1LG01g09910 vs. TAIR 10
Match: AT1G15770.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 3.4e-09
Identity = 35/110 (31.82%), Postives = 57/110 (51.82%), Query Frame = 0


Query: 81  LENGSEKAFIVSTPGMSPSSLLEEVTDSDRD----------NDKCCVTPLQRLIKMVNVM 140
           +  G  ++  + TPG+S S LL E+T  D +                 P++RLI+ +  +
Sbjct: 144 IRQGVLQSLEIGTPGISASPLLPELTSPDGNIINPLTSTCGKSSATELPIERLIRAMKSI 203

Query: 141 SPKALSASVSDIDSIVCMTDRVPSSAPLNKSKGAVGMDLAGTVASRLRRK 181
           SP+ALS++V DI S+V M DR+  S P   S+ + G+DL       L+ +
Sbjct: 204 SPQALSSAVCDIRSVVSMVDRIAGSVPGKGSRASFGVDLVAMTKCHLQER 253

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g09910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4I171	3.2e-20	27.66	Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana ...	[more]
Q9SHV7	6.0e-11	44.62	Probable mediator of RNA polymerase II transcription subunit 15c OS=Arabidopsis ...	[more]
F4I169	4.8e-08	31.82	Probable mediator of RNA polymerase II transcription subunit 15b OS=Arabidopsis ...	[more]

BLAST of Cp4.1LG01g09910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023526658.1	6.30e-185	67.94	mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita pepo sub...	[more]
XP_022984739.1	6.96e-182	67.22	mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita maxima]	[more]
XP_022956517.1	1.15e-180	66.99	mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita moschata...	[more]
KAG6601093.1	3.28e-180	66.75	Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argy...	[more]
KAG7031897.1	8.64e-121	66.78	Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argy...	[more]

BLAST of Cp4.1LG01g09910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JBE6	3.37e-182	67.22	mediator of RNA polymerase II transcription subunit 15a-like OS=Cucurbita maxima...	[more]
A0A6J1GWK1	5.56e-181	66.99	mediator of RNA polymerase II transcription subunit 15a-like OS=Cucurbita moscha...	[more]
A0A6J1CCM7	3.65e-82	47.50	mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Momor...	[more]
A0A6J1CEI3	6.20e-55	70.80	mediator of RNA polymerase II transcription subunit 15a-like isoform X2 OS=Momor...	[more]
A0A5B7BEL5	1.23e-35	35.45	Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_036768...	[more]

BLAST of Cp4.1LG01g09910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15780.1	2.3e-21	27.66	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G10440.1	4.3e-12	44.62	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G10440.2	4.3e-12	44.62	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G15770.1	3.4e-09	31.82	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044661	Mediator of RNA polymerase II transcription subunit 15a/b/c-like	PANTHER	PTHR33137	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED	coord: 215..281
IPR044661	Mediator of RNA polymerase II transcription subunit 15a/b/c-like	PANTHER	PTHR33137	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED	coord: 89..196
None	No IPR available	PANTHER	PTHR33137:SF27	OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A, PUTATIVE-RELATED	coord: 89..196 coord: 215..281

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g09910.1	Cp4.1LG01g09910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
molecular_function	GO:0031490	chromatin DNA binding
molecular_function	GO:0003713	transcription coactivator activity