Cp4.1LG01g03790 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG01g03790
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG01: 1683304 .. 1683588 (+)
RNA-Seq ExpressionCp4.1LG01g03790
SyntenyCp4.1LG01g03790
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATCGATACCACTCCCCTCGAATTCGGCGGCGAGAGTGACGGCGGCCGTCGATGCGGCAAGTCTTCCAGCAGACCTTCTAAGTACGACGTCGTCGGAGACATCTTCTTCGGTAAGGATGATATGAAAGAATACGCATGGGATGGAGCTTTCACTGAGAAAACGGTTCGATTCATTGAAAGTGAGTCCGCCATGAAATCTCTGAGAAAGAGAAGCAATAGAAGGCCAGAAACATTCGATTGCTTTGAGTTCTTGAAATTCGTGTGGTGCTTCATATTTTAA

mRNA sequence

ATGGCCATCGATACCACTCCCCTCGAATTCGGCGGCGAGAGTGACGGCGGCCGTCGATGCGGCAAGTCTTCCAGCAGACCTTCTAAGTACGACGTCGTCGGAGACATCTTCTTCGGTAAGGATGATATGAAAGAATACGCATGGGATGGAGCTTTCACTGAGAAAACGGTTCGATTCATTGAAAGTGAGTCCGCCATGAAATCTCTGAGAAAGAGAAGCAATAGAAGGCCAGAAACATTCGATTGCTTTGAGTTCTTGAAATTCGTGTGGTGCTTCATATTTTAA

Coding sequence (CDS)

ATGGCCATCGATACCACTCCCCTCGAATTCGGCGGCGAGAGTGACGGCGGCCGTCGATGCGGCAAGTCTTCCAGCAGACCTTCTAAGTACGACGTCGTCGGAGACATCTTCTTCGGTAAGGATGATATGAAAGAATACGCATGGGATGGAGCTTTCACTGAGAAAACGGTTCGATTCATTGAAAGTGAGTCCGCCATGAAATCTCTGAGAAAGAGAAGCAATAGAAGGCCAGAAACATTCGATTGCTTTGAGTTCTTGAAATTCGTGTGGTGCTTCATATTTTAA

Protein sequence

MAIDTTPLEFGGESDGGRRCGKSSSRPSKYDVVGDIFFGKDDMKEYAWDGAFTEKTVRFIESESAMKSLRKRSNRRPETFDCFEFLKFVWCFIF
Homology
BLAST of Cp4.1LG01g03790 vs. NCBI nr
Match: KAG6576802.1 (hypothetical protein SDJN03_24376, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014829.1 hypothetical protein SDJN02_22458, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130 bits (326), Expect = 4.62e-37
Identity = 67/94 (71.28%), Postives = 73/94 (77.66%), Query Frame = 0

Query: 1  MAIDTTPLEFGGESDGGRRCGKSSSRPSKYDVVGDIFFGKDDMKEYAWDGAFTEKTVRFI 60
          MA DT P EFG    GG   GKS S PSKYDVVGDIFFGKDDMK Y WD  FTE+TVRF+
Sbjct: 1  MARDTLPYEFG--VGGG---GKSCSSPSKYDVVGDIFFGKDDMKGYVWDEVFTEETVRFL 60

Query: 61 ESESAMKSLRKRSNRRPETFDCFEFLKFVWCFIF 94
          E+ESA++ LRKRS RR ETF CFEFLKF+WCF F
Sbjct: 61 ETESAVEVLRKRSKRRLETFKCFEFLKFLWCFNF 89

BLAST of Cp4.1LG01g03790 vs. NCBI nr
Match: KAG6600176.1 (hypothetical protein SDJN03_05409, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126 bits (317), Expect = 1.03e-33
Identity = 58/77 (75.32%), Postives = 64/77 (83.12%), Query Frame = 0

Query: 1  MAIDTTPLEFGGESDGGRRCGKSSSRPSKYDVVGDIFFGKDDMKEYAWDGAFTEKTVRFI 60
          MAIDTTP EFGG+ DGGRRCGKS SRPSKYDVVGDIFFGKDDMKEYAWDGAFTEKTVRFI
Sbjct: 1  MAIDTTPFEFGGDGDGGRRCGKSCSRPSKYDVVGDIFFGKDDMKEYAWDGAFTEKTVRFI 60

Query: 61 ESESAMKSLRKRSNRRP 77
          E+     ++  + +  P
Sbjct: 61 ETVRRFSTVNVKRSSEP 77

BLAST of Cp4.1LG01g03790 vs. NCBI nr
Match: KAG7030840.1 (hypothetical protein SDJN02_04877, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 126 bits (317), Expect = 3.87e-33
Identity = 58/77 (75.32%), Postives = 64/77 (83.12%), Query Frame = 0

Query: 1  MAIDTTPLEFGGESDGGRRCGKSSSRPSKYDVVGDIFFGKDDMKEYAWDGAFTEKTVRFI 60
          MAIDTTP EFGG+ DGGRRCGKS SRPSKYDVVGDIFFGKDDMKEYAWDGAFTEKTVRFI
Sbjct: 1  MAIDTTPFEFGGDGDGGRRCGKSCSRPSKYDVVGDIFFGKDDMKEYAWDGAFTEKTVRFI 60

Query: 61 ESESAMKSLRKRSNRRP 77
          E+     ++  + +  P
Sbjct: 61 ETVRRFSTVNVKRSSEP 77

BLAST of Cp4.1LG01g03790 vs. NCBI nr
Match: KGN57263.1 (hypothetical protein Csa_009618 [Cucumis sativus])

HSP 1 Score: 112 bits (281), Expect = 2.72e-30
Identity = 58/94 (61.70%), Postives = 64/94 (68.09%), Query Frame = 0

Query: 1  MAIDTTPLEFGGESDGGRRCGKSSSRPSKYDVVGDIFFGKDDMKEYAWDGAFTEKTVRFI 60
          MA D  P EFGG   G    G            GDIFFGKDDMKEYAWDG +TE+TVRFI
Sbjct: 1  MARDILPFEFGGGGAGESERG------------GDIFFGKDDMKEYAWDGVYTEETVRFI 60

Query: 61 ESESAMKSLRKRSNRRPETFDCFEFLKFVWCFIF 94
          E+ESA K+LRKRS R+ E F+CFEFLK VWCF F
Sbjct: 61 ETESAKKALRKRSRRKLEPFNCFEFLKIVWCFKF 82

BLAST of Cp4.1LG01g03790 vs. NCBI nr
Match: KAA0067665.1 (hypothetical protein E6C27_scaffold70G00340 [Cucumis melo var. makuwa] >TYK23669.1 hypothetical protein E5676_scaffold577G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (255), Expect = 2.49e-26
Identity = 54/94 (57.45%), Postives = 62/94 (65.96%), Query Frame = 0

Query: 1  MAIDTTPLEFGGESDGGRRCGKSSSRPSKYDVVGDIFFGKDDMKEYAWDGAFTEKTVRFI 60
          MA D  P EFGG   G    G            GD+FFGKDDMKEYAWDG +TE+TVRFI
Sbjct: 1  MARDILPFEFGGGGGGESERG------------GDVFFGKDDMKEYAWDGVYTEETVRFI 60

Query: 61 ESESAMKSLRKRSNRRPETFDCFEFLKFVWCFIF 94
          E+ESA K+LRKRS R+ E F+CFEFL+ V  F F
Sbjct: 61 ETESAKKALRKRSRRKLEPFNCFEFLRIVCSFKF 82

BLAST of Cp4.1LG01g03790 vs. ExPASy TrEMBL
Match: A0A0A0L658 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175640 PE=4 SV=1)

HSP 1 Score: 112 bits (281), Expect = 1.32e-30
Identity = 58/94 (61.70%), Postives = 64/94 (68.09%), Query Frame = 0

Query: 1  MAIDTTPLEFGGESDGGRRCGKSSSRPSKYDVVGDIFFGKDDMKEYAWDGAFTEKTVRFI 60
          MA D  P EFGG   G    G            GDIFFGKDDMKEYAWDG +TE+TVRFI
Sbjct: 1  MARDILPFEFGGGGAGESERG------------GDIFFGKDDMKEYAWDGVYTEETVRFI 60

Query: 61 ESESAMKSLRKRSNRRPETFDCFEFLKFVWCFIF 94
          E+ESA K+LRKRS R+ E F+CFEFLK VWCF F
Sbjct: 61 ETESAKKALRKRSRRKLEPFNCFEFLKIVWCFKF 82

BLAST of Cp4.1LG01g03790 vs. ExPASy TrEMBL
Match: A0A5D3DK72 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00350 PE=4 SV=1)

HSP 1 Score: 102 bits (255), Expect = 1.21e-26
Identity = 54/94 (57.45%), Postives = 62/94 (65.96%), Query Frame = 0

Query: 1  MAIDTTPLEFGGESDGGRRCGKSSSRPSKYDVVGDIFFGKDDMKEYAWDGAFTEKTVRFI 60
          MA D  P EFGG   G    G            GD+FFGKDDMKEYAWDG +TE+TVRFI
Sbjct: 1  MARDILPFEFGGGGGGESERG------------GDVFFGKDDMKEYAWDGVYTEETVRFI 60

Query: 61 ESESAMKSLRKRSNRRPETFDCFEFLKFVWCFIF 94
          E+ESA K+LRKRS R+ E F+CFEFL+ V  F F
Sbjct: 61 ETESAKKALRKRSRRKLEPFNCFEFLRIVCSFKF 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6576802.14.62e-3771.28hypothetical protein SDJN03_24376, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6600176.11.03e-3375.32hypothetical protein SDJN03_05409, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7030840.13.87e-3375.32hypothetical protein SDJN02_04877, partial [Cucurbita argyrosperma subsp. argyro... [more]
KGN57263.12.72e-3061.70hypothetical protein Csa_009618 [Cucumis sativus][more]
KAA0067665.12.49e-2657.45hypothetical protein E6C27_scaffold70G00340 [Cucumis melo var. makuwa] >TYK23669... [more]
Match NameE-valueIdentityDescription
A0A0A0L6581.32e-3061.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175640 PE=4 SV=1[more]
A0A5D3DK721.21e-2657.45Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g03790.1Cp4.1LG01g03790.1mRNA