Cp4.1LG01g03210 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG01g03210
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionlate embryogenesis abundant protein At5g17165-like isoform X2
LocationCp4.1LG01: 1907219 .. 1912741 (-)
RNA-Seq ExpressionCp4.1LG01g03210
SyntenyCp4.1LG01g03210
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCGTTGAGAGCTTTTGTCGGCTTTTGGCGGGTATGATACGACGCCGTACTGGCGAACTATAAAAGAAGGATTTGCTGCTTCAGGATTAGAATCAAGAATCAAAAGCAATTACTCGCCGTTTTTCTTCTTCATTCTCTCTCTCTGTTTAAGCCTGAATTGTATGGCCGCCAATTCGAGGAGCGCAGGAGCGATCGCCGGCTTGGGAAAACGAATCACAAACCAGATCTGGACCAGCGATTCTGCGATCTCCTCCTCTGCTCTGAAGTTCAGGTCCTTTTTCTTCTTTTTCTTCTTCTGTGAATATTCGTCTGGCAATATGCTTGAAGTTTAGGTTGTGTTGATATTCTCTGCTAGTTGTTTGATTGCATTCTTGTTGAAATTTTCTATAAGAAAGTCGATTGTTGATCCATTTCTTTTTCTTCACGCTGAATGCTTTTTTGAACAACTTCGTATTGACGCAGTATGATAAACGTCAGTTTCAGGTCCTCTTCTTCCATGTGCTCTTTTTTTTGATCATATACTTTACTCGGTTCCTTTTGATTTCGGTTTTTTCTTCTTTTAGGAGTCTAATTCGCATTCAGCTCTTCCTGCCATATATAGTATTATGACTAACTCACCTAGAAAATTTGAAATTACGTTTCCTTCACTCTATGCTGCTTTTTTCCTCTCTTCCTCTTTGTTTTTGGTTTAATTTGGTGGATGTTCGCTTTCCTTCACTCTATGTTTCTTTTTTCCTCTCTTCCTCTTTGTTTTTGGTTCAATTTTGTGGATGTATGTCAATTTTATTATTCAGTGTTTGTTCTATCACGCTGTAAATAACTCCTCTAAGTGGAGATACTGCTTTCTGTTGAACCGGACTTGGAATTAGAGAGGTATAATTCGTATTCTTTGGAATCTTTGTTGAAATTTGACTAAATCACGCCTATTTCATACTCTTTTTTTTTCTTTTTTTTAATTAAAAAAACTCTTAAGCCATTGTTTAGGTTGATTTTAGATATATGAAATCAGTAAATCCAGAAGTCGTGAATATTTGAGGACATGACCTAAATTTATAATATCATTTACAATTAAGTAACTGATTTATTTTTTAATATATTAAATAATCCATTGTTTAATAAATCTTATAATTTTTTTTAAACTCTTAAGAAATAAATAATTGAGTACAATATATTTAATACATTTTAGCTTTAATCTTAAGTTTAATTATAGCAAAATATGATCGATTGATCATCTTGAATGTTTTAGCATTTAATTAATTATAATTAATATAATTAAAAAATTTCAGACCATAAATTTTCTTTTCATCCGTTTTTCATTTTCTTTTTCTTTTTCTTTTCATTNATATTCAAATCCCATACCTGCCATTTAATTGAGGGGTCTATAAAACAAAAATTTAAAAGTTTAATAACACAGTTTTAAATTATGGGATCAAATAAATAAAATTAAAGTTTAGACATTAAACTTGGAATTCAACCTTAAAGAAGCTATTTTAATCGCTGCGGTCTGCAAGTATTAATATATTTTATTTAAATTTATTATATTGTTTTGAAAACTCAACTACTGAACTTATTTCCTGAGGATAAAGTTTAGTTTATCCGTTGGTTGACTTTTTTCCATTCAACTTTGGACTATAATTTTTTTTAAACTAAAGGTAAGATGTGACTTGTTTGAGCCCATATATGGAAACTTCATTACTTCATTGTTGACTAGATAATGAAATATCAAAATTTCACTCTGAAATTGGGGAATGTCGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTGGGATGCCCAAAAATTATTAGATTGGTTGTCTGTTCAAATTTGATGTGTTATTTTTCTATATTTTACTGTTTCTATTCTACATGCCCTTGACTATTATTCAGTCTGCAAACTATTCACATTGAAACATCTTACGAGAAGCGGTTGTTTTGAGGCATAAATATGGGATGCCTAAAAATTAACCTTAATCTTCAATCATATTGTTATTTTGTAAGTATGAGTAAAAAATTTCAACGAACTTAATTAAGTATTTAAAAAAGAAAATCAATAAATTAAACCAAATATTTTTGTTTATAATGTATAGAAATAAGAATCTTTTTCTTCCATTTTTCTATACTAGATCTAAAGTCTTATTCAATACCTTATATATTTGATTATTAAAGTCTTAGAAGCTAAGTCTTTTATTTCATACCTTATATTTATGTTTGAATAATAGGTTGAATTATGAATAAAAATTTAAATTATAAGTTTGGTTTCCGAACTCTTAATTTTGTGTCTAATTAATATTTAATAATTTATTAGACATAAAATTAAAAGATTTATTTAATTTTATAAGATAATTTTAAAATTAAAAAATACATGTTGAATACAGAATTAAAAGTCAAATATCTGTAGGGTATCAAAATTAAAATGGGGTTTGATAAATAAATATCTACAGCATCACCCTTTTTTGATGCTAAAAAAGCTCAAAGCAAACCCTTACTCTAGTCCGTAGATACTAGAGGAGGTTGCTGACAATTAAAGCTGAGTGTCTGCGATGTGATGTGGTCGTGGTTGATCCACTTGTTTCAGCTGATTTTTTTTCTTTACATTTATTTTCCCATTTCCCACAGTGGGCTGGGACCGAATGGCTTTCAATAGGATAGAATCATAGAATAGGTGGGCAGTGAGGAGACAGGCGAGGGTTGGCGAGTTAACGACCACTCAGTACCCCTTATTAAATATTTTCGCTGACCTTCTCTTCCCACTTAGCTTCCAAAATTCACATTTAGTTAAATTAATGTCGATATCTATTATCTATTCTTTGGTCGGTAGCCGTATGTTCCCTACTACATAATCGATATCTTACTCATTTTCTTTTAAATTAAATCTAACTTTCACATTTAATATACTAGAAAAACATTATTTAATCAGATATACTATCCTTTTTCTTTAGCTTTCTTTCTTTTTTTTCTTTTTTTTTTTCTTTTTTTGTATATTTTTTTTCTATTAATTTACTAGACAGATATAATGTTAGATGATATGGAAATCTCTTATTTAGAATAAGACCATTGTTGCTCACAATGTGATTAGAGCAGGAGATCATCAATTTCTATATCTCTAGATGTTTCATTAAAAAAATCAATTCAATAGCTAGTATCCCAAATCACAATTTATTTATTTGGTTGAGATATTAAACAAATGTTTGATTGAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAAAAATATTAGGTAATGTGTTGAAGAAAATATTATAATATCAGAACTTAAATAATATGCCTAAACCCATTTTTTTATGCGACTTTGTATCAAGTTGCTGGGTAGGACAGCGTTGTTCTTATCATTTGGAATTGATCAGTTAGGTAGTATTACAAAAAGTCAATTATAAATATAATTGCCATTTTCTCCTTTGTCTTTGTCCTTAGCATATGCTTTGGATCTTTTTATCATCTTACCTGTGGTCCATGCATTATCAATTATAATTCTTTACACAAATTATTAATTCTCATTTTAGAATTAAAGTATAAAATTCTTATGCTTACTTTGCTTTGGTCTTTAAAACCTATTACCTTTTTTCTCGTTTCACTTTTCAATGTTCTATTTTAATTTCTAACATTGTTTCAATATTACCTTACTATTTGATTGATTGTCTTGACTTTATATCTATATTGAAACCCATATCATTTACTTCCTTAATTTTATAATATACTTCTTTCAGTCCTTAAGCTAAAATAGTTTTACTCAATTTAACTTTTCATTAACTAATTACCATAACATATATATACTAGGCAACTTTAATTTATATCAAATGATGAAATTAGTCGGAAAAAGCTAATGAATTTTTCTTTCACAATTTTTTTTTTGGTTACTATATATTATTATTAATGGGAATGAAAAACAAACCTGAAACAGGAGGGCATGTTGAGATATATTATTTATGGAATATATCCTAGATATTATATCTTAATATTCTTCCATTTATGGTTAGATTTATAGTATATTTTATTTTATTCTAGTATTTAATTATTTTATATTTTCCTCATTTGTACCGGCTTGTATCCTATTTAAAGGATATCAATATCAATGATAATATACACCTTCCCAATTATATTTTTCTATCTCATTCTTAACATGGTATCAGAGCACCGATCTTGATATTCCTAATATCAAAGCATCGATCGTGGTATTCCTAATACCCCCTTGGACTCTGAGTCCAAGGGGAGTATTACCTAAAGCCAAACCCTAACCAATCAGTGAAGTCTTTACCATCGTCAATCATCCAATATCAAGAATACGTTATAAGCATCTTCAAATTTCTCACCAAGCTCTAAGGTGACAAATTCAAGATGTTCGTATTTTCTTTCACAGCCTCTCAAGTGATCCAAAGCACCGATCTTGGTGTCATTATCCACTAAAGCATTTATGCATGGACCAACAAGTGATCAGGGAGGATATTCACTTGTTCCAAATCAAATTAAATGGACAAGTTATCAATCCTCGAGTCAATCATTGCAGTCTATTTCTAAAGCATTTATGCATGGACCGAGAAGTGATCAGGGAGGATATTCACTTGTTCCAAATCAAATTAAATGGGACAAGTTACCAATCCTCGAGTCAATCATTGCGGTCTATTTCTGAGTCTTGCATCTTTCTTGAAAATTCAATAATTTCTTGAAAGTCTAAAAATGCAAACCAATCAAAGGCGGCCTACTTCTGAGTCTTGCATCTTTCTTGAAAATTCAATAATTTCTTGAAAGTCTAAAAATGCAAACCAATCAAAGGCGGTTTTTTTTTACGGATATTTTCATTACTGAGAAGACAAGAGTGAAAGACAACTTGGGTGTTATTGACCTACAGTAAAGACAAGTTAAAGACAAGTTGGACGTGATTAACATACACTCTCAAACTTGAGGGGGAGTGTTGAGATATATTATTTATGGAATATATCCTAGATATTATATCTTAATATTCTTCCATTTATGGTTAGATTTATAGTATATTTTATTTTATTCTAGTATTTAATTATTTTATATTTTCCTCATTTGTACCGGCTTGTATCCTATTTAAAGGATATCAATATCAATGATAATATACACCTTCCCAATTATATTTTTCTATCTCATTCTTAACAGGGCAGCTCACACCTCAGCGTATGACAAAAACCCCGACGAACAAGTCCGACCAAGCATAGTCCCTGATGATGTGATTCAGCCTCAAGTTGCTGAAAAGTACTGGGCTCCTCATCCACACACCGGCGTTTTTGGGCCAGAGGTCGATCAGCCTACTGCAGTGGCGGGAAGCCGTGCTGCAGATGGTGGCAACCACGCTGCTGCGGAGGAGGAAAAGGCGTGGTTCCGACCAACCAGTCTGGAGGATTCCGAGAAACCCCACGGGTTTTAG

mRNA sequence

TGCGTTGAGAGCTTTTGTCGGCTTTTGGCGGGTATGATACGACGCCGTACTGGCGAACTATAAAAGAAGGATTTGCTGCTTCAGGATTAGAATCAAGAATCAAAAGCAATTACTCGCCGTTTTTCTTCTTCATTCTCTCTCTCTGTTTAAGCCTGAATTGTATGGCCGCCAATTCGAGGAGCGCAGGAGCGATCGCCGGCTTGGGAAAACGAATCACAAACCAGATCTGGACCAGCGATTCTGCGATCTCCTCCTCTGCTCTGAAGTTCAGGACAGCGTTGTTCTTATCATTTGGAATTGATCAGTTAGTCCCTGATGATGTGATTCAGCCTCAAGTTGCTGAAAAGTACTGGGCTCCTCATCCACACACCGGCGTTTTTGGGCCAGAGGTCGATCAGCCTACTGCAGTGGCGGGAAGCCGTGCTGCAGATGGTGGCAACCACGCTGCTGCGGAGGAGGAAAAGGCGTGGTTCCGACCAACCAGTCTGGAGGATTCCGAGAAACCCCACGGGTTTTAG

Coding sequence (CDS)

ATGGCCGCCAATTCGAGGAGCGCAGGAGCGATCGCCGGCTTGGGAAAACGAATCACAAACCAGATCTGGACCAGCGATTCTGCGATCTCCTCCTCTGCTCTGAAGTTCAGGACAGCGTTGTTCTTATCATTTGGAATTGATCAGTTAGTCCCTGATGATGTGATTCAGCCTCAAGTTGCTGAAAAGTACTGGGCTCCTCATCCACACACCGGCGTTTTTGGGCCAGAGGTCGATCAGCCTACTGCAGTGGCGGGAAGCCGTGCTGCAGATGGTGGCAACCACGCTGCTGCGGAGGAGGAAAAGGCGTGGTTCCGACCAACCAGTCTGGAGGATTCCGAGAAACCCCACGGGTTTTAG

Protein sequence

MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRTALFLSFGIDQLVPDDVIQPQVAEKYWAPHPHTGVFGPEVDQPTAVAGSRAADGGNHAAAEEEKAWFRPTSLEDSEKPHGF
Homology
[Close]
BLAST of Cp4.1LG01g03210 vs. ExPASy Swiss-Prot
Match: F4KFM8 (Late embryogenesis abundant protein At5g17165 OS=Arabidopsis thaliana OX=3702 GN=At5g17165 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.9e-12
Identity = 36/67 (53.73%), Postives = 44/67 (65.67%), Query Frame = 0 

Query: 50  VPDDVIQPQVAEKYWAPHPHTGVFGPEVDQPTAVAGSRAADGGNHAAAEEEKAWFRPTSL 109
           VPD++I+P  ++KYW+PHP TGVFGP      A    R   GG   +  EEKAWFRPTSL
Sbjct: 52  VPDEMIKPD-SDKYWSPHPQTGVFGPSSSSTNAKDEFR---GGQEDSVMEEKAWFRPTSL 111

Query: 110 EDSEKPH 117
           ED +K H
Sbjct: 112 EDLDKTH 114

[Close]
BLAST of Cp4.1LG01g03210 vs. NCBI nr
Match: XP_023512363.1 (late embryogenesis abundant protein At5g17165-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 207 bits (528), Expect = 6.00e-67
Identity = 107/125 (85.60%), Postives = 111/125 (88.80%), Query Frame = 0 

Query: 1   MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRTALFLSFGID-------QLVPDD 60
           MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFR A   ++  +        +VPDD
Sbjct: 1   MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRAAHTSAYDKNPDEQVRPSIVPDD 60

Query: 61  VIQPQVAEKYWAPHPHTGVFGPEVDQPTAVAGSRAADGGNHAAAEEEKAWFRPTSLEDSE 118
           VIQPQVAEKYWAPHPHTGVFGPEVDQPTAVAGSRAADGGNHAAAEEEKAWFRPTSLEDSE
Sbjct: 61  VIQPQVAEKYWAPHPHTGVFGPEVDQPTAVAGSRAADGGNHAAAEEEKAWFRPTSLEDSE 120

[Close]
BLAST of Cp4.1LG01g03210 vs. NCBI nr
Match: XP_022941803.1 (late embryogenesis abundant protein At5g17165-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 203 bits (516), Expect = 4.05e-65
Identity = 104/125 (83.20%), Postives = 108/125 (86.40%), Query Frame = 0 

Query: 1   MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRTALFLSFGID-------QLVPDD 60
           MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFR A   ++  +        +VPDD
Sbjct: 1   MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRAAHTSAYDKNPDEQVRPSIVPDD 60

Query: 61  VIQPQVAEKYWAPHPHTGVFGPEVDQPTAVAGSRAADGGNHAAAEEEKAWFRPTSLEDSE 118
           VIQPQ AEKYWAPHPHTGVFGPE DQPTA AGSRAADGGNHAAAEEEKAWFRPTSLEDSE
Sbjct: 61  VIQPQAAEKYWAPHPHTGVFGPEADQPTAAAGSRAADGGNHAAAEEEKAWFRPTSLEDSE 120

[Close]
BLAST of Cp4.1LG01g03210 vs. NCBI nr
Match: XP_022941802.1 (late embryogenesis abundant protein At5g17165-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 202 bits (514), Expect = 8.45e-65
Identity = 106/127 (83.46%), Postives = 108/127 (85.04%), Query Frame = 0 

Query: 1   MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRTALFLSFGIDQ---------LVP 60
           MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFR A   S   D+         +VP
Sbjct: 1   MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRRAAHTS-AYDKNPDEQVRPSIVP 60

Query: 61  DDVIQPQVAEKYWAPHPHTGVFGPEVDQPTAVAGSRAADGGNHAAAEEEKAWFRPTSLED 118
           DDVIQPQ AEKYWAPHPHTGVFGPE DQPTA AGSRAADGGNHAAAEEEKAWFRPTSLED
Sbjct: 61  DDVIQPQAAEKYWAPHPHTGVFGPEADQPTAAAGSRAADGGNHAAAEEEKAWFRPTSLED 120

[Close]
BLAST of Cp4.1LG01g03210 vs. NCBI nr
Match: KAG6600216.1 (Late embryogenesis abundant protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 197 bits (501), Expect = 8.11e-63
Identity = 104/127 (81.89%), Postives = 106/127 (83.46%), Query Frame = 0 

Query: 1   MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRTALFLSFGIDQ---------LVP 60
           MAANSRSAGAIAGLGKRITNQIWT DSAISSSALKFR A   S   D+         +VP
Sbjct: 1   MAANSRSAGAIAGLGKRITNQIWTCDSAISSSALKFRRAAHTS-AYDKNPDEQVRPSIVP 60

Query: 61  DDVIQPQVAEKYWAPHPHTGVFGPEVDQPTAVAGSRAADGGNHAAAEEEKAWFRPTSLED 118
           DDVIQPQ AEKYWAPHPHTGVFGPE DQ TA AGSRAADGGNHAAAEEEKAWFRPTSLED
Sbjct: 61  DDVIQPQAAEKYWAPHPHTGVFGPEADQSTAAAGSRAADGGNHAAAEEEKAWFRPTSLED 120

[Close]
BLAST of Cp4.1LG01g03210 vs. NCBI nr
Match: XP_022990298.1 (late embryogenesis abundant protein At5g17165-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 190 bits (482), Expect = 6.18e-60
Identity = 98/125 (78.40%), Postives = 104/125 (83.20%), Query Frame = 0 

Query: 1   MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRTALFLSFGID-------QLVPDD 60
           MAANSRSAGAIAGLGKRITNQI TSDSAISSSALKFR A   ++  +        +VPDD
Sbjct: 1   MAANSRSAGAIAGLGKRITNQICTSDSAISSSALKFRAAHTSAYDKNPDEQVRPSIVPDD 60

Query: 61  VIQPQVAEKYWAPHPHTGVFGPEVDQPTAVAGSRAADGGNHAAAEEEKAWFRPTSLEDSE 118
           VIQPQ AEKYWAPHPHTGVFGPE +QPTA   +RAADGGNHAA EEEKAWFRPTSLEDSE
Sbjct: 61  VIQPQAAEKYWAPHPHTGVFGPEAEQPTAAVATRAADGGNHAAVEEEKAWFRPTSLEDSE 120

[Close]
BLAST of Cp4.1LG01g03210 vs. ExPASy TrEMBL
Match: A0A6J1FT47 (late embryogenesis abundant protein At5g17165-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111447057 PE=4 SV=1)

HSP 1 Score: 203 bits (516), Expect = 1.96e-65
Identity = 104/125 (83.20%), Postives = 108/125 (86.40%), Query Frame = 0 

Query: 1   MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRTALFLSFGID-------QLVPDD 60
           MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFR A   ++  +        +VPDD
Sbjct: 1   MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRAAHTSAYDKNPDEQVRPSIVPDD 60

Query: 61  VIQPQVAEKYWAPHPHTGVFGPEVDQPTAVAGSRAADGGNHAAAEEEKAWFRPTSLEDSE 118
           VIQPQ AEKYWAPHPHTGVFGPE DQPTA AGSRAADGGNHAAAEEEKAWFRPTSLEDSE
Sbjct: 61  VIQPQAAEKYWAPHPHTGVFGPEADQPTAAAGSRAADGGNHAAAEEEKAWFRPTSLEDSE 120

[Close]
BLAST of Cp4.1LG01g03210 vs. ExPASy TrEMBL
Match: A0A6J1FNH5 (late embryogenesis abundant protein At5g17165-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111447057 PE=4 SV=1)

HSP 1 Score: 202 bits (514), Expect = 4.09e-65
Identity = 106/127 (83.46%), Postives = 108/127 (85.04%), Query Frame = 0 

Query: 1   MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRTALFLSFGIDQ---------LVP 60
           MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFR A   S   D+         +VP
Sbjct: 1   MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRRAAHTS-AYDKNPDEQVRPSIVP 60

Query: 61  DDVIQPQVAEKYWAPHPHTGVFGPEVDQPTAVAGSRAADGGNHAAAEEEKAWFRPTSLED 118
           DDVIQPQ AEKYWAPHPHTGVFGPE DQPTA AGSRAADGGNHAAAEEEKAWFRPTSLED
Sbjct: 61  DDVIQPQAAEKYWAPHPHTGVFGPEADQPTAAAGSRAADGGNHAAAEEEKAWFRPTSLED 120

[Close]
BLAST of Cp4.1LG01g03210 vs. ExPASy TrEMBL
Match: A0A6J1JSV5 (late embryogenesis abundant protein At5g17165-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111487206 PE=4 SV=1)

HSP 1 Score: 190 bits (482), Expect = 2.99e-60
Identity = 98/125 (78.40%), Postives = 104/125 (83.20%), Query Frame = 0 

Query: 1   MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRTALFLSFGID-------QLVPDD 60
           MAANSRSAGAIAGLGKRITNQI TSDSAISSSALKFR A   ++  +        +VPDD
Sbjct: 1   MAANSRSAGAIAGLGKRITNQICTSDSAISSSALKFRAAHTSAYDKNPDEQVRPSIVPDD 60

Query: 61  VIQPQVAEKYWAPHPHTGVFGPEVDQPTAVAGSRAADGGNHAAAEEEKAWFRPTSLEDSE 118
           VIQPQ AEKYWAPHPHTGVFGPE +QPTA   +RAADGGNHAA EEEKAWFRPTSLEDSE
Sbjct: 61  VIQPQAAEKYWAPHPHTGVFGPEAEQPTAAVATRAADGGNHAAVEEEKAWFRPTSLEDSE 120

[Close]
BLAST of Cp4.1LG01g03210 vs. ExPASy TrEMBL
Match: A0A6J1JRN3 (late embryogenesis abundant protein At5g17165-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487206 PE=4 SV=1)

HSP 1 Score: 189 bits (480), Expect = 6.24e-60
Identity = 100/127 (78.74%), Postives = 104/127 (81.89%), Query Frame = 0 

Query: 1   MAANSRSAGAIAGLGKRITNQIWTSDSAISSSALKFRTALFLSFGIDQ---------LVP 60
           MAANSRSAGAIAGLGKRITNQI TSDSAISSSALKFR A   S   D+         +VP
Sbjct: 1   MAANSRSAGAIAGLGKRITNQICTSDSAISSSALKFRRAAHTS-AYDKNPDEQVRPSIVP 60

Query: 61  DDVIQPQVAEKYWAPHPHTGVFGPEVDQPTAVAGSRAADGGNHAAAEEEKAWFRPTSLED 118
           DDVIQPQ AEKYWAPHPHTGVFGPE +QPTA   +RAADGGNHAA EEEKAWFRPTSLED
Sbjct: 61  DDVIQPQAAEKYWAPHPHTGVFGPEAEQPTAAVATRAADGGNHAAVEEEKAWFRPTSLED 120

[Close]
BLAST of Cp4.1LG01g03210 vs. ExPASy TrEMBL
Match: A0A1S3BYE5 (uncharacterized protein LOC103494437 OS=Cucumis melo OX=3656 GN=LOC103494437 PE=4 SV=1)

HSP 1 Score: 160 bits (406), Expect = 1.42e-48
Identity = 91/131 (69.47%), Postives = 98/131 (74.81%), Query Frame = 0 

Query: 1   MAANSRSAGAIAGLGKRITNQIWTS-----DSAISSSALKFRTALFLSFGIDQ------- 60
           MAANSRSAGAIAGLGKRIT+QIWTS     +S ISSSA KFR A   S            
Sbjct: 1   MAANSRSAGAIAGLGKRITDQIWTSSDSLRNSVISSSAPKFRRAAHTSVYDKNPEEQVRP 60

Query: 61  -LVPDDVIQPQVAEKYWAPHPHTGVFGPEVDQPTAVAGS-RAADGGNHAAAEEEKAWFRP 117
            +VPDDVIQPQ A+KYWAPHP TGVFGP  D P AVA + RAAD GN++AAEEEKAWFRP
Sbjct: 61  SIVPDDVIQPQAADKYWAPHPQTGVFGPTSDNPAAVAAANRAADVGNYSAAEEEKAWFRP 120

[Close]
BLAST of Cp4.1LG01g03210 vs. TAIR 10
Match: AT3G03150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17165.1); Has 39 Blast hits to 39 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-13
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 0 

Query: 50  VPDDVIQPQVAEKYWAPHPHTGVFGPEVDQPTAVAGSRAADGGNHAAAEEEKAWFRPTSL 109
           VPD+VI+P  ++KYW+PHP TGVFGP   + +A A     D     A  EE AWFRPTSL
Sbjct: 58  VPDEVIKPD-SDKYWSPHPKTGVFGPSTTEHSATAEGAHQD----TAVLEETAWFRPTSL 117

Query: 110 EDSEKPH 117
           EDS+K H
Sbjct: 118 EDSDKTH 119

[Close]
BLAST of Cp4.1LG01g03210 vs. TAIR 10
Match: AT5G17165.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03150.1); Has 39 Blast hits to 39 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 72.4 bits (176), Expect = 2.7e-13
Identity = 36/67 (53.73%), Postives = 44/67 (65.67%), Query Frame = 0 

Query: 50  VPDDVIQPQVAEKYWAPHPHTGVFGPEVDQPTAVAGSRAADGGNHAAAEEEKAWFRPTSL 109
           VPD++I+P  ++KYW+PHP TGVFGP      A    R   GG   +  EEKAWFRPTSL
Sbjct: 52  VPDEMIKPD-SDKYWSPHPQTGVFGPSSSSTNAKDEFR---GGQEDSVMEEKAWFRPTSL 111

Query: 110 EDSEKPH 117
           ED +K H
Sbjct: 112 EDLDKTH 114

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g03210 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4KFM83.9e-1253.73Late embryogenesis abundant protein At5g17165 OS=Arabidopsis thaliana OX=3702 GN... [more]
BLAST of Cp4.1LG01g03210 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023512363.16.00e-6785.60late embryogenesis abundant protein At5g17165-like [Cucurbita pepo subsp. pepo][more]
XP_022941803.14.05e-6583.20late embryogenesis abundant protein At5g17165-like isoform X2 [Cucurbita moschat... [more]
XP_022941802.18.45e-6583.46late embryogenesis abundant protein At5g17165-like isoform X1 [Cucurbita moschat... [more]
KAG6600216.18.11e-6381.89Late embryogenesis abundant protein, partial [Cucurbita argyrosperma subsp. soro... [more]
XP_022990298.16.18e-6078.40late embryogenesis abundant protein At5g17165-like isoform X2 [Cucurbita maxima][more]
BLAST of Cp4.1LG01g03210 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FT471.96e-6583.20late embryogenesis abundant protein At5g17165-like isoform X2 OS=Cucurbita mosch... [more]
A0A6J1FNH54.09e-6583.46late embryogenesis abundant protein At5g17165-like isoform X1 OS=Cucurbita mosch... [more]
A0A6J1JSV52.99e-6078.40late embryogenesis abundant protein At5g17165-like isoform X2 OS=Cucurbita maxim... [more]
A0A6J1JRN36.24e-6078.74late embryogenesis abundant protein At5g17165-like isoform X1 OS=Cucurbita maxim... [more]
A0A1S3BYE51.42e-4869.47uncharacterized protein LOC103494437 OS=Cucumis melo OX=3656 GN=LOC103494437 PE=... [more]
BLAST of Cp4.1LG01g03210 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G03150.11.2e-1355.22unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G17165.12.7e-1353.73unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 70..118
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..118
NoneNo IPR availablePANTHERPTHR35122:SF2OSJNBA0093F12.14 PROTEINcoord: 1..116
IPR039291Late embryogenesis abundant protein At5g17165-likePANTHERPTHR35122OSJNBA0093F12.14 PROTEINcoord: 1..116

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g03210.1Cp4.1LG01g03210.1mRNA