Cp4.1LG01g01130 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCCCCGAAACTGATCTCCAACGCAAAGCGCCGCACTCATCCGCTCATTTGGTTCGCTGCCGTTCTCTGTACTCTGGTTTCGATCGCCGTCATAATCGCCGGTGTCGGCGTCTTCATTGGCTACCTAGTGATCCACCCTAGGATTCCGATGATCCGTGTCATCGGCGCTCATCTCAATAACTTCCAGAACGACATCGCCGGACGCCTCGAGGTTCAGTTAACGATCCTCGTCGAGGCGGAGAATGATAACGCGAAAGCGCACGCGAGTTTCTCCGATACGAGATTGTTCAAGAGTTTTCTAGGGCTAAACATCGCTGAGCTTGTAGCCGATCCATTCGATGTGAGGAAGAACAGCTCTGTCCAGTTCCATTACGCCGTGAATTCGATTAAGATTCCTTTGAATCCAGAGCAGATGGAGGAAGTCGATTTCGTGTTGAAGACGGATCTGATCCAGTTCAATTTGAACGGGGACACGAGAGTTCAATGGCGAGTTGGATTGTTTGGATCCGTGAAATTCGTATGCCAAATTCATTGCGGGCTTCAATTTCATCATTCCAACGGAACGTACTTGATTTCACCTTGTAGTTCTCGAGCAAAATGA ATGCCCCCGAAACTGATCTCCAACGCAAAGCGCCGCACTCATCCGCTCATTTGGTTCGCTGCCGTTCTCTGTACTCTGGTTTCGATCGCCGTCATAATCGCCGGTGTCGGCGTCTTCATTGGCTACCTAGTGATCCACCCTAGGATTCCGATGATCCGTGTCATCGGCGCTCATCTCAATAACTTCCAGAACGACATCGCCGGACGCCTCGAGGTTCAGTTAACGATCCTCGTCGAGGCGGAGAATGATAACGCGAAAGCGCACGCGAGTTTCTCCGATACGAGATTGTTCAAGAGTTTTCTAGGGCTAAACATCGCTGAGCTTGTAGCCGATCCATTCGATGTGAGGAAGAACAGCTCTGTCCAGTTCCATTACGCCGTGAATTCGATTAAGATTCCTTTGAATCCAGAGCAGATGGAGGAAGTCGATTTCGTGTTGAAGACGGATCTGATCCAGTTCAATTTGAACGGGGACACGAGAGTTCAATGGCGAGTTGGATTGTTTGGATCCGTGAAATTCGTATGCCAAATTCATTGCGGGCTTCAATTTCATCATTCCAACGGAACGTACTTGATTTCACCTTGTAGTTCTCGAGCAAAATGA ATGCCCCCGAAACTGATCTCCAACGCAAAGCGCCGCACTCATCCGCTCATTTGGTTCGCTGCCGTTCTCTGTACTCTGGTTTCGATCGCCGTCATAATCGCCGGTGTCGGCGTCTTCATTGGCTACCTAGTGATCCACCCTAGGATTCCGATGATCCGTGTCATCGGCGCTCATCTCAATAACTTCCAGAACGACATCGCCGGACGCCTCGAGGTTCAGTTAACGATCCTCGTCGAGGCGGAGAATGATAACGCGAAAGCGCACGCGAGTTTCTCCGATACGAGATTGTTCAAGAGTTTTCTAGGGCTAAACATCGCTGAGCTTGTAGCCGATCCATTCGATGTGAGGAAGAACAGCTCTGTCCAGTTCCATTACGCCGTGAATTCGATTAAGATTCCTTTGAATCCAGAGCAGATGGAGGAAGTCGATTTCGTGTTGAAGACGGATCTGATCCAGTTCAATTTGAACGGGGACACGAGAGTTCAATGGCGAGTTGGATTGTTTGGATCCGTGAAATTCGTATGCCAAATTCATTGCGGGCTTCAATTTCATCATTCCAACGGAACGTACTTGATTTCACCTTGTAGTTCTCGAGCAAAATGA MPPKLISNAKRRTHPLIWFAAVLCTLVSIAVIIAGVGVFIGYLVIHPRIPMIRVIGAHLNNFQNDIAGRLEVQLTILVEAENDNAKAHASFSDTRLFKSFLGLNIAELVADPFDVRKNSSVQFHYAVNSIKIPLNPEQMEEVDFVLKTDLIQFNLNGDTRVQWRVGLFGSVKFVCQIHCGLQFHHSNGTYLISPCSSRAK Homology
BLAST of Cp4.1LG01g01130 vs. NCBI nr
Match: XP_023526921.1 (uncharacterized protein LOC111790256 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 400 bits (1028), Expect = 1.29e-140 Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0
BLAST of Cp4.1LG01g01130 vs. NCBI nr
Match: KAG7031080.1 (hypothetical protein SDJN02_05119, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 372 bits (955), Expect = 1.75e-129 Identity = 187/200 (93.50%), Postives = 191/200 (95.50%), Query Frame = 0
BLAST of Cp4.1LG01g01130 vs. NCBI nr
Match: KAG6600429.1 (hypothetical protein SDJN03_05662, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 371 bits (953), Expect = 3.52e-129 Identity = 187/200 (93.50%), Postives = 191/200 (95.50%), Query Frame = 0
BLAST of Cp4.1LG01g01130 vs. NCBI nr
Match: XP_022942740.1 (uncharacterized protein LOC111447688 [Cucurbita moschata]) HSP 1 Score: 343 bits (880), Expect = 3.32e-118 Identity = 172/184 (93.48%), Postives = 177/184 (96.20%), Query Frame = 0
BLAST of Cp4.1LG01g01130 vs. NCBI nr
Match: XP_022136394.1 (uncharacterized protein LOC111008115 [Momordica charantia]) HSP 1 Score: 306 bits (783), Expect = 2.83e-103 Identity = 149/200 (74.50%), Postives = 172/200 (86.00%), Query Frame = 0
BLAST of Cp4.1LG01g01130 vs. ExPASy TrEMBL
Match: A0A6J1FWU7 (uncharacterized protein LOC111447688 OS=Cucurbita moschata OX=3662 GN=LOC111447688 PE=4 SV=1) HSP 1 Score: 343 bits (880), Expect = 1.61e-118 Identity = 172/184 (93.48%), Postives = 177/184 (96.20%), Query Frame = 0
BLAST of Cp4.1LG01g01130 vs. ExPASy TrEMBL
Match: A0A6J1C468 (uncharacterized protein LOC111008115 OS=Momordica charantia OX=3673 GN=LOC111008115 PE=4 SV=1) HSP 1 Score: 306 bits (783), Expect = 1.37e-103 Identity = 149/200 (74.50%), Postives = 172/200 (86.00%), Query Frame = 0
BLAST of Cp4.1LG01g01130 vs. ExPASy TrEMBL
Match: A0A6J1JD00 (uncharacterized protein LOC111483375 OS=Cucurbita maxima OX=3661 GN=LOC111483375 PE=4 SV=1) HSP 1 Score: 300 bits (769), Expect = 1.86e-101 Identity = 146/200 (73.00%), Postives = 169/200 (84.50%), Query Frame = 0
BLAST of Cp4.1LG01g01130 vs. ExPASy TrEMBL
Match: A0A0A0KX91 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056550 PE=4 SV=1) HSP 1 Score: 300 bits (769), Expect = 1.86e-101 Identity = 148/200 (74.00%), Postives = 171/200 (85.50%), Query Frame = 0
BLAST of Cp4.1LG01g01130 vs. ExPASy TrEMBL
Match: A0A5D3D1V8 (NDR1/HIN1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G002470 PE=4 SV=1) HSP 1 Score: 299 bits (766), Expect = 5.32e-101 Identity = 148/200 (74.00%), Postives = 170/200 (85.00%), Query Frame = 0
BLAST of Cp4.1LG01g01130 vs. TAIR 10
Match: AT5G45320.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 253 Blast hits to 253 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 253; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 194.5 bits (493), Expect = 8.1e-50 Identity = 98/198 (49.49%), Postives = 130/198 (65.66%), Query Frame = 0
BLAST of Cp4.1LG01g01130 vs. TAIR 10
Match: AT3G26350.1 (LOCATED IN: chloroplast; EXPRESSED IN: root, pedicel, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13050.1); Has 3534 Blast hits to 2704 proteins in 342 species: Archae - 6; Bacteria - 192; Metazoa - 1076; Fungi - 505; Plants - 1162; Viruses - 224; Other Eukaryotes - 369 (source: NCBI BLink). ) HSP 1 Score: 73.2 bits (178), Expect = 2.7e-13 Identity = 46/174 (26.44%), Postives = 77/174 (44.25%), Query Frame = 0
BLAST of Cp4.1LG01g01130 vs. TAIR 10
Match: AT4G26490.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family ) HSP 1 Score: 60.8 bits (146), Expect = 1.4e-09 Identity = 47/173 (27.17%), Postives = 75/173 (43.35%), Query Frame = 0
BLAST of Cp4.1LG01g01130 vs. TAIR 10
Match: AT1G13050.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 538 Blast hits to 510 proteins in 88 species: Archae - 0; Bacteria - 23; Metazoa - 81; Fungi - 36; Plants - 361; Viruses - 8; Other Eukaryotes - 29 (source: NCBI BLink). ) HSP 1 Score: 59.7 bits (143), Expect = 3.1e-09 Identity = 41/174 (23.56%), Postives = 74/174 (42.53%), Query Frame = 0
BLAST of Cp4.1LG01g01130 vs. TAIR 10
Match: AT1G13050.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 260 Blast hits to 259 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 260; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 54.3 bits (129), Expect = 1.3e-07 Identity = 38/165 (23.03%), Postives = 69/165 (41.82%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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