Cp4.1LG00g01640 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG00g01640
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Pentatricopeptide repeat-containing protein
Location	Cp4.1LG00: 3930039 .. 3930965 (+)
RNA-Seq Expression	Cp4.1LG00g01640
Synteny	Cp4.1LG00g01640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCAAACCACAAGACATAATCCCCTTCTACGCCGCTCTCCTCCAAGCATGCTCCTCCACCAAGAACCACCGCACCCTCAAGCAAATCCACGCTCTAACCATCCGACTCGGAATCTCTCACCATGATTTCATTCGAACCAAGCTTGCCTCCACCTACGCCGCCTGCCACCATCTCCCACAAGCCACTACCATCTTCTCCTTCGCCACTCGCCGCCCCACCTTCCTCTTTAATGCCCTCATCAGAGCCCACTCCTCTCTGCGTCTCTTCTCCCAATCACTCTCGATTTTCCGCCATATGCTTGTTTCTGGAAAGCCCATTGACCGTCATACTTTGCCGCCGGTGCTCAAGTCATGTACGGGGCTGTCGTCCTTGCGCCTTGGCCGGCAGGTTCATGGGGCTGTTGTGATTAATGGGTTCTCAACCGATTTGCCGAATTTGAATGCGTTGATTACGATGTACGGGAAGTGCGGGGACTTGGGTGTTGCACGGAAGGTGTTCGATGGAATGCCTGAGAGAAATGAGGTGTCGTGGTCTGCGCTGATGGCGGGTTATGGTGTTCATGGGATGTTTGGTGAGGTGTTTGGATTGTTTGAGAGGATGGTGGAAGAGGGACAAAAGCCGGATGAGCTCACTTTTACAGCTCTTCTCACGGCATGTAGCCATGGAGGGTTGATTGAGAGGGGGAAGGAGTATTTTGGTATGATGAAAATGGGGTTCGATTTGAGGCCTGGGTTGGAGCATTACACCTGCATGGTGGATTTGCTGGGGAGGGTGGGACAAGTGGAAGAAGCAGAGAAGTTGATTATGGAGATGGAGATTGAGCCTGATGAGGCATTGTGGGGCGCCCTGCTGGGTGCTTGTAGGATTCATGGGAAAGCCGAGGTGGCTGATAGGGTGCAAACACGGTTTATGAAGCAACACTGA

mRNA sequence

ATGCCCAAACCACAAGACATAATCCCCTTCTACGCCGCTCTCCTCCAAGCATGCTCCTCCACCAAGAACCACCGCACCCTCAAGCAAATCCACGCTCTAACCATCCGACTCGGAATCTCTCACCATGATTTCATTCGAACCAAGCTTGCCTCCACCTACGCCGCCTGCCACCATCTCCCACAAGCCACTACCATCTTCTCCTTCGCCACTCGCCGCCCCACCTTCCTCTTTAATGCCCTCATCAGAGCCCACTCCTCTCTGCGTCTCTTCTCCCAATCACTCTCGATTTTCCGCCATATGCTTGTTTCTGGAAAGCCCATTGACCGTCATACTTTGCCGCCGGTGCTCAAGTCATGTACGGGGCTGTCGTCCTTGCGCCTTGGCCGGCAGGTTCATGGGGCTGTTGTGATTAATGGGTTCTCAACCGATTTGCCGAATTTGAATGCGTTGATTACGATGTACGGGAAGTGCGGGGACTTGGGTGTTGCACGGAAGGTGTTCGATGGAATGCCTGAGAGAAATGAGGTGTCGTGGTCTGCGCTGATGGCGGGTTATGGTGTTCATGGGATGTTTGGTGAGGTGTTTGGATTGTTTGAGAGGATGGTGGAAGAGGGACAAAAGCCGGATGAGCTCACTTTTACAGCTCTTCTCACGGCATGTAGCCATGGAGGGTTGATTGAGAGGGGGAAGGAGTATTTTGGTATGATGAAAATGGGGTTCGATTTGAGGCCTGGGTTGGAGCATTACACCTGCATGGTGGATTTGCTGGGGAGGGTGGGACAAGTGGAAGAAGCAGAGAAGTTGATTATGGAGATGGAGATTGAGCCTGATGAGGCATTGTGGGGCGCCCTGCTGGGTGCTTGTAGGATTCATGGGAAAGCCGAGGTGGCTGATAGGGTGCAAACACGGTTTATGAAGCAACACTGA

Coding sequence (CDS)

ATGCCCAAACCACAAGACATAATCCCCTTCTACGCCGCTCTCCTCCAAGCATGCTCCTCCACCAAGAACCACCGCACCCTCAAGCAAATCCACGCTCTAACCATCCGACTCGGAATCTCTCACCATGATTTCATTCGAACCAAGCTTGCCTCCACCTACGCCGCCTGCCACCATCTCCCACAAGCCACTACCATCTTCTCCTTCGCCACTCGCCGCCCCACCTTCCTCTTTAATGCCCTCATCAGAGCCCACTCCTCTCTGCGTCTCTTCTCCCAATCACTCTCGATTTTCCGCCATATGCTTGTTTCTGGAAAGCCCATTGACCGTCATACTTTGCCGCCGGTGCTCAAGTCATGTACGGGGCTGTCGTCCTTGCGCCTTGGCCGGCAGGTTCATGGGGCTGTTGTGATTAATGGGTTCTCAACCGATTTGCCGAATTTGAATGCGTTGATTACGATGTACGGGAAGTGCGGGGACTTGGGTGTTGCACGGAAGGTGTTCGATGGAATGCCTGAGAGAAATGAGGTGTCGTGGTCTGCGCTGATGGCGGGTTATGGTGTTCATGGGATGTTTGGTGAGGTGTTTGGATTGTTTGAGAGGATGGTGGAAGAGGGACAAAAGCCGGATGAGCTCACTTTTACAGCTCTTCTCACGGCATGTAGCCATGGAGGGTTGATTGAGAGGGGGAAGGAGTATTTTGGTATGATGAAAATGGGGTTCGATTTGAGGCCTGGGTTGGAGCATTACACCTGCATGGTGGATTTGCTGGGGAGGGTGGGACAAGTGGAAGAAGCAGAGAAGTTGATTATGGAGATGGAGATTGAGCCTGATGAGGCATTGTGGGGCGCCCTGCTGGGTGCTTGTAGGATTCATGGGAAAGCCGAGGTGGCTGATAGGGTGCAAACACGGTTTATGAAGCAACACTGA

Protein sequence

MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRVQTRFMKQH

Homology

[Close]

BLAST of Cp4.1LG00g01640 vs. ExPASy Swiss-Prot
Match: Q9STF3 (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRR2 PE=2 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 3.2e-58
Identity = 117/299 (39.13%), Postives = 176/299 (58.86%), Query Frame = 0


Query: 11  YAALLQAC---SSTKNHRTL-KQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIF 70
           Y  +L+AC     T NH    K+IHA   R G S H +I T L   YA    +  A+ +F
Sbjct: 181 YTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVF 240

Query: 71  SFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRH--TLPPVLKSCTGLSS 130
                R    ++A+I  ++      ++L  FR M+   K    +  T+  VL++C  L++
Sbjct: 241 GGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAA 300

Query: 131 LRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAG 190
           L  G+ +HG ++  G  + LP ++AL+TMYG+CG L V ++VFD M +R+ VSW++L++ 
Sbjct: 301 LEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISS 360

Query: 191 YGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGFDLRP 250
           YGVHG   +   +FE M+  G  P  +TF ++L ACSH GL+E GK  F  M     ++P
Sbjct: 361 YGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKP 420

Query: 251 GLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRVQTR 304
            +EHY CMVDLLGR  +++EA K++ +M  EP   +WG+LLG+CRIHG  E+A+R   R
Sbjct: 421 QIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRR 479

[Close]

BLAST of Cp4.1LG00g01640 vs. ExPASy Swiss-Prot
Match: Q9LND4 (Pentatricopeptide repeat-containing protein At1g06140, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E61 PE=2 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 5.6e-55
Identity = 104/293 (35.49%), Postives = 166/293 (56.66%), Query Frame = 0


Query: 14  LLQACSSTKNHRTLKQIHALTIRLG-ISHHDFIRTKLASTYAACHHLPQATTIFSFATRR 73
           L++AC +    +  K +H ++IR   I   D+++  +   Y  C  L  A  +F  +  R
Sbjct: 216 LVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDR 275

Query: 74  PTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCTGLSSLRLGRQVH 133
              ++  LI   +      ++  +FR ML      ++ TL  +L SC+ L SLR G+ VH
Sbjct: 276 NVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVH 335

Query: 134 GAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFG 193
           G ++ NG   D  N  + I MY +CG++ +AR VFD MPERN +SWS+++  +G++G+F 
Sbjct: 336 GYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERNVISWSSMINAFGINGLFE 395

Query: 194 EVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGFDLRPGLEHYTCM 253
           E    F +M  +   P+ +TF +LL+ACSH G ++ G + F  M   + + P  EHY CM
Sbjct: 396 EALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEEEHYACM 455

Query: 254 VDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRVQTRFM 306
           VDLLGR G++ EA+  I  M ++P  + WGALL ACRIH + ++A  +  + +
Sbjct: 456 VDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSACRIHKEVDLAGEIAEKLL 508

[Close]

BLAST of Cp4.1LG00g01640 vs. ExPASy Swiss-Prot
Match: O23491 (Pentatricopeptide repeat-containing protein At4g16470 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E12 PE=2 SV=2)

HSP 1 Score: 212.2 bits (539), Expect = 8.1e-54
Identity = 103/296 (34.80%), Postives = 169/296 (57.09%), Query Frame = 0


Query: 11  YAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFAT 70
           YA LLQ C   K +   K+IHA    +G + +++++ KL   YA    L  A  +F    
Sbjct: 111 YAVLLQECKQRKEYTKGKRIHAQMFVVGFALNEYLKVKLLILYALSGDLQTAGILFRSLK 170

Query: 71  RRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCTGLSSLRLGRQ 130
            R    +NA+I  +    L  + L I+  M  +    D++T   V ++C+ L  L  G++
Sbjct: 171 IRDLIPWNAMISGYVQKGLEQEGLFIYYDMRQNRIVPDQYTFASVFRACSALDRLEHGKR 230

Query: 131 VHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGM 190
            H  ++     +++   +AL+ MY KC       +VFD +  RN ++W++L++GYG HG 
Sbjct: 231 AHAVMIKRCIKSNIIVDSALVDMYFKCSSFSDGHRVFDQLSTRNVITWTSLISGYGYHGK 290

Query: 191 FGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGFDLRPGLEHYT 250
             EV   FE+M EEG +P+ +TF  +LTAC+HGGL+++G E+F  MK  + + P  +HY 
Sbjct: 291 VSEVLKCFEKMKEEGCRPNPVTFLVVLTACNHGGLVDKGWEHFYSMKRDYGIEPEGQHYA 350

Query: 251 CMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRVQTRFMK 307
            MVD LGR G+++EA + +M+   +    +WG+LLGACRIHG  ++ +   T+F++
Sbjct: 351 AMVDTLGRAGRLQEAYEFVMKSPCKEHPPVWGSLLGACRIHGNVKLLELAATKFLE 406

[Close]

BLAST of Cp4.1LG00g01640 vs. ExPASy Swiss-Prot
Match: P0C8Q2 (Pentatricopeptide repeat-containing protein At4g19191, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E1 PE=2 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 3.1e-53
Identity = 108/299 (36.12%), Postives = 167/299 (55.85%), Query Frame = 0


Query: 5   QDIIPFYAALLQACSSTKNHRTLKQ---IHALTIRLGISHHDFIRTKLASTYAACHHLPQ 64
           ++  P  +  +   +S +N  TL Q   IH+  I LG            S Y+       
Sbjct: 250 EEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCS 309

Query: 65  ATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCTG 124
           A  +F   T R    +  +I  ++      ++L++F  M+ SG+  D  TL  ++  C  
Sbjct: 310 ARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGK 369

Query: 125 LSSLRLGRQVHGAVVINGFSTD-LPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 184
             SL  G+ +     I G   D +   NALI MY KCG +  AR +FD  PE+  V+W+ 
Sbjct: 370 FGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTT 429

Query: 185 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 244
           ++AGY ++G+F E   LF +M++   KP+ +TF A+L AC+H G +E+G EYF +MK  +
Sbjct: 430 MIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVY 489

Query: 245 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADR 300
           ++ PGL+HY+CMVDLLGR G++EEA +LI  M  +PD  +WGALL AC+IH   ++A++
Sbjct: 490 NISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQ 548

[Close]

BLAST of Cp4.1LG00g01640 vs. ExPASy Swiss-Prot
Match: P93005 (Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E19 PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 4.0e-53
Identity = 110/283 (38.87%), Postives = 159/283 (56.18%), Query Frame = 0


Query: 14  LLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRP 73
           +L ACS        KQ+H+  ++LG   H F  T L   YA    L  A   F     R 
Sbjct: 328 VLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERD 387

Query: 74  TFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCTGLSSLRLGRQVHG 133
             L+ +LI  +       ++L ++R M  +G   +  T+  VLK+C+ L++L LG+QVHG
Sbjct: 388 VALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHG 447

Query: 134 AVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFGE 193
             + +GF  ++P  +AL TMY KCG L     VF   P ++ VSW+A+++G   +G   E
Sbjct: 448 HTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDE 507

Query: 194 VFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGFDLRPGLEHYTCMV 253
              LFE M+ EG +PD++TF  +++ACSH G +ERG  YF MM     L P ++HY CMV
Sbjct: 508 ALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMV 567

Query: 254 DLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEV 297
           DLL R GQ++EA++ I    I+    LW  LL AC+ HGK E+
Sbjct: 568 DLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCEL 610

[Close]

BLAST of Cp4.1LG00g01640 vs. NCBI nr
Match: XP_023520705.1 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 630 bits (1625), Expect = 5.18e-228
Identity = 308/308 (100.00%), Postives = 308/308 (100.00%), Query Frame = 0


Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP
Sbjct: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCT 120
           QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCT
Sbjct: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCT 120

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 240
           LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF
Sbjct: 181 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 240

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRV 300
           DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRV
Sbjct: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRV 300

Query: 301 QTRFMKQH 308
           QTRFMKQH
Sbjct: 301 QTRFMKQH 308

[Close]

BLAST of Cp4.1LG00g01640 vs. NCBI nr
Match: KAG7019344.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 622 bits (1604), Expect = 8.24e-225
Identity = 303/308 (98.38%), Postives = 306/308 (99.35%), Query Frame = 0


Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP
Sbjct: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCT 120
           QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHML+SGKPIDRHTLPPV+KSCT
Sbjct: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVIKSCT 120

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 240
           LMAGYGVHGMF EVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMM+MGF
Sbjct: 181 LMAGYGVHGMFSEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMEMGF 240

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRV 300
           DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALL ACRIHGKAEVADRV
Sbjct: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKAEVADRV 300

Query: 301 QTRFMKQH 308
           QTRFMKQH
Sbjct: 301 QTRFMKQH 308

[Close]

BLAST of Cp4.1LG00g01640 vs. NCBI nr
Match: KAG6583697.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 620 bits (1600), Expect = 3.36e-224
Identity = 302/308 (98.05%), Postives = 306/308 (99.35%), Query Frame = 0


Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP
Sbjct: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCT 120
           QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHML+SGKPIDRHTLPPV+KSCT
Sbjct: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVIKSCT 120

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 240
           LMAGYGVHGMF EVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMM+MGF
Sbjct: 181 LMAGYGVHGMFSEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMEMGF 240

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRV 300
           DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALL ACRIHGKAEVADRV
Sbjct: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKAEVADRV 300

Query: 301 QTRFMKQH 308
           QTRF+KQH
Sbjct: 301 QTRFIKQH 308

[Close]

BLAST of Cp4.1LG00g01640 vs. NCBI nr
Match: XP_022927399.1 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 617 bits (1591), Expect = 7.90e-223
Identity = 301/308 (97.73%), Postives = 304/308 (98.70%), Query Frame = 0


Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP
Sbjct: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCT 120
           QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFR ML+SGKPIDRHTLPPV+KSCT
Sbjct: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHTLPPVIKSCT 120

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 240
           LMAGYGVHGMF EVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMM+MGF
Sbjct: 181 LMAGYGVHGMFDEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGF 240

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRV 300
           DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALL ACRIHGK EVADRV
Sbjct: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRV 300

Query: 301 QTRFMKQH 308
           QTRFMKQH
Sbjct: 301 QTRFMKQH 308

[Close]

BLAST of Cp4.1LG00g01640 vs. NCBI nr
Match: XP_022973156.1 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 610 bits (1574), Expect = 3.33e-220
Identity = 300/310 (96.77%), Postives = 304/310 (98.06%), Query Frame = 0


Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           MPKPQDIIPFYAALLQACSSTKNH TLKQIHALTIRLGISHHDFIRTKLASTYAAC HLP
Sbjct: 1   MPKPQDIIPFYAALLQACSSTKNHHTLKQIHALTIRLGISHHDFIRTKLASTYAACDHLP 60

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCT 120
           QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHML+SGKPIDRHTLPPVLKSCT
Sbjct: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVLKSCT 120

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHG VVINGFSTDLPNLNALITMYGKCGDLG+ARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGFVVINGFSTDLPNLNALITMYGKCGDLGIARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 240
           LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF
Sbjct: 181 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 240

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEME--IEPDEALWGALLGACRIHGKAEVAD 300
           +L+PGLEHYTCMVDLLGRVGQVEEAEKLIMEME  IEPDEALWGALL ACRIHGKAEVAD
Sbjct: 241 NLKPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEMEIEPDEALWGALLSACRIHGKAEVAD 300

Query: 301 RVQTRFMKQH 308
           RVQTRFMKQH
Sbjct: 301 RVQTRFMKQH 310

[Close]

BLAST of Cp4.1LG00g01640 vs. ExPASy TrEMBL
Match: A0A6J1EHW3 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111434233 PE=4 SV=1)

HSP 1 Score: 617 bits (1591), Expect = 3.83e-223
Identity = 301/308 (97.73%), Postives = 304/308 (98.70%), Query Frame = 0


Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP
Sbjct: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCT 120
           QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFR ML+SGKPIDRHTLPPV+KSCT
Sbjct: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHTLPPVIKSCT 120

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 240
           LMAGYGVHGMF EVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMM+MGF
Sbjct: 181 LMAGYGVHGMFDEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGF 240

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRV 300
           DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALL ACRIHGK EVADRV
Sbjct: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRV 300

Query: 301 QTRFMKQH 308
           QTRFMKQH
Sbjct: 301 QTRFMKQH 308

[Close]

BLAST of Cp4.1LG00g01640 vs. ExPASy TrEMBL
Match: A0A6J1I7X0 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111471666 PE=4 SV=1)

HSP 1 Score: 610 bits (1574), Expect = 1.61e-220
Identity = 300/310 (96.77%), Postives = 304/310 (98.06%), Query Frame = 0


Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           MPKPQDIIPFYAALLQACSSTKNH TLKQIHALTIRLGISHHDFIRTKLASTYAAC HLP
Sbjct: 1   MPKPQDIIPFYAALLQACSSTKNHHTLKQIHALTIRLGISHHDFIRTKLASTYAACDHLP 60

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCT 120
           QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHML+SGKPIDRHTLPPVLKSCT
Sbjct: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVLKSCT 120

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHG VVINGFSTDLPNLNALITMYGKCGDLG+ARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGFVVINGFSTDLPNLNALITMYGKCGDLGIARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 240
           LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF
Sbjct: 181 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 240

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEME--IEPDEALWGALLGACRIHGKAEVAD 300
           +L+PGLEHYTCMVDLLGRVGQVEEAEKLIMEME  IEPDEALWGALL ACRIHGKAEVAD
Sbjct: 241 NLKPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEMEIEPDEALWGALLSACRIHGKAEVAD 300

Query: 301 RVQTRFMKQH 308
           RVQTRFMKQH
Sbjct: 301 RVQTRFMKQH 310

[Close]

BLAST of Cp4.1LG00g01640 vs. ExPASy TrEMBL
Match: A0A0A0K1F7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041310 PE=4 SV=1)

HSP 1 Score: 560 bits (1443), Expect = 1.39e-200
Identity = 274/307 (89.25%), Postives = 287/307 (93.49%), Query Frame = 0


Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           MPKP +IIPFYAALL ACSST N  TLKQIHALTI L ISHH FIRTKLASTYAAC  LP
Sbjct: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCT 120
           QATTIFSFATRRPT+LFN LIRAHSSLRLFSQSLSIFRHML+SGK IDRHTLPPVLKSCT
Sbjct: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGA++INGFS DLP+LNALITMYGKCGDLGVARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 240
           LMAGYGVHGMFGEVF LFERMVEEGQKPDELTFT+LLTACSHGGLIE+GKEYFGMM+M F
Sbjct: 181 LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF 240

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRV 300
            LRPGL+HYTCMVDLLGR GQVEEAEKLIMEMEIEPDEALWGA+L ACRIHGK +VADRV
Sbjct: 241 HLRPGLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRV 300

Query: 301 QTRFMKQ 307
           Q RF+KQ
Sbjct: 301 QKRFIKQ 307

[Close]

BLAST of Cp4.1LG00g01640 vs. ExPASy TrEMBL
Match: A0A6J1CNN2 (pentatricopeptide repeat-containing protein At1g06140, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111012761 PE=4 SV=1)

HSP 1 Score: 547 bits (1410), Expect = 1.48e-195
Identity = 267/306 (87.25%), Postives = 281/306 (91.83%), Query Frame = 0


Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           MP  Q  +PFYAALL+ACSSTKN  +L+QIHALTIRL ISHHDFIRTKL S+YAAC  L 
Sbjct: 1   MPSSQGTVPFYAALLEACSSTKNLHSLEQIHALTIRLAISHHDFIRTKLVSSYAACAQLR 60

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCT 120
           QAT IFSFATRRPTFLFN LIRAHSSLRLF QSLSIFR ML+SGKPIDRHTLP VLKSCT
Sbjct: 61  QATAIFSFATRRPTFLFNTLIRAHSSLRLFPQSLSIFRRMLLSGKPIDRHTLPLVLKSCT 120

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHG VVINGFS DLPN NALITMYGKCGDLGVARKVFD MPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGVVVINGFSVDLPNSNALITMYGKCGDLGVARKVFDEMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 240
           LMAGYGVHG FGEVFGLFERMVE+GQKPD LTFTALLTACSHGGL+ERGKEYFGMM+MGF
Sbjct: 181 LMAGYGVHGKFGEVFGLFERMVEDGQKPDGLTFTALLTACSHGGLVERGKEYFGMMRMGF 240

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRV 300
           DLRPGLEHYTCMVD+LGR GQVEEAEKLIMEME+EPDEALWGALL ACRIHGKAEVADR+
Sbjct: 241 DLRPGLEHYTCMVDMLGRAGQVEEAEKLIMEMEVEPDEALWGALLSACRIHGKAEVADRL 300

Query: 301 QTRFMK 306
           Q RF++
Sbjct: 301 QKRFIE 306

[Close]

BLAST of Cp4.1LG00g01640 vs. ExPASy TrEMBL
Match: A0A5A7UT42 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold786G00080 PE=4 SV=1)

HSP 1 Score: 543 bits (1400), Expect = 4.94e-194
Identity = 265/307 (86.32%), Postives = 284/307 (92.51%), Query Frame = 0


Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           MPKP +IIPFYAALL+ACSSTKN  TLKQIHALTI L ISHH FIRTKLASTYAAC  LP
Sbjct: 1   MPKPHEIIPFYAALLEACSSTKNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCT 120
           QA TIFSFATRRPT+LFNALIRAHSSLRLFSQSLSIFRHML+SGK  DRHT P VLKSCT
Sbjct: 61  QANTIFSFATRRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSTDRHTFPLVLKSCT 120

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGA++INGFS DLP+LNALITMY KCGDLGVARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYSKCGDLGVARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 240
           LMAGYGVHGMFGEVF LFERMV+EGQ+PDELTFT+LLTACSHGGLIE+GKEYF  M+M F
Sbjct: 181 LMAGYGVHGMFGEVFRLFERMVKEGQRPDELTFTSLLTACSHGGLIEKGKEYFRTMRMEF 240

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRV 300
            LRPGL+HYTCMVDLLGR+GQVEEAEKLIMEME+EPDEALWGA+L ACRIHG+ +VADRV
Sbjct: 241 HLRPGLQHYTCMVDLLGRLGQVEEAEKLIMEMEMEPDEALWGAMLSACRIHGRVDVADRV 300

Query: 301 QTRFMKQ 307
           Q RF+KQ
Sbjct: 301 QKRFIKQ 307

[Close]

BLAST of Cp4.1LG00g01640 vs. TAIR 10
Match: AT3G46790.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 226.9 bits (577), Expect = 2.3e-59
Identity = 117/299 (39.13%), Postives = 176/299 (58.86%), Query Frame = 0


Query: 11  YAALLQAC---SSTKNHRTL-KQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIF 70
           Y  +L+AC     T NH    K+IHA   R G S H +I T L   YA    +  A+ +F
Sbjct: 181 YTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVF 240

Query: 71  SFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRH--TLPPVLKSCTGLSS 130
                R    ++A+I  ++      ++L  FR M+   K    +  T+  VL++C  L++
Sbjct: 241 GGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAA 300

Query: 131 LRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAG 190
           L  G+ +HG ++  G  + LP ++AL+TMYG+CG L V ++VFD M +R+ VSW++L++ 
Sbjct: 301 LEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISS 360

Query: 191 YGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGFDLRP 250
           YGVHG   +   +FE M+  G  P  +TF ++L ACSH GL+E GK  F  M     ++P
Sbjct: 361 YGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKP 420

Query: 251 GLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRVQTR 304
            +EHY CMVDLLGR  +++EA K++ +M  EP   +WG+LLG+CRIHG  E+A+R   R
Sbjct: 421 QIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRR 479

[Close]

BLAST of Cp4.1LG00g01640 vs. TAIR 10
Match: AT1G06140.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 216.1 bits (549), Expect = 4.0e-56
Identity = 104/293 (35.49%), Postives = 166/293 (56.66%), Query Frame = 0


Query: 14  LLQACSSTKNHRTLKQIHALTIRLG-ISHHDFIRTKLASTYAACHHLPQATTIFSFATRR 73
           L++AC +    +  K +H ++IR   I   D+++  +   Y  C  L  A  +F  +  R
Sbjct: 216 LVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDR 275

Query: 74  PTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCTGLSSLRLGRQVH 133
              ++  LI   +      ++  +FR ML      ++ TL  +L SC+ L SLR G+ VH
Sbjct: 276 NVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVH 335

Query: 134 GAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFG 193
           G ++ NG   D  N  + I MY +CG++ +AR VFD MPERN +SWS+++  +G++G+F 
Sbjct: 336 GYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERNVISWSSMINAFGINGLFE 395

Query: 194 EVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGFDLRPGLEHYTCM 253
           E    F +M  +   P+ +TF +LL+ACSH G ++ G + F  M   + + P  EHY CM
Sbjct: 396 EALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEEEHYACM 455

Query: 254 VDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRVQTRFM 306
           VDLLGR G++ EA+  I  M ++P  + WGALL ACRIH + ++A  +  + +
Sbjct: 456 VDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSACRIHKEVDLAGEIAEKLL 508

[Close]

BLAST of Cp4.1LG00g01640 vs. TAIR 10
Match: AT4G16470.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 212.2 bits (539), Expect = 5.8e-55
Identity = 103/296 (34.80%), Postives = 169/296 (57.09%), Query Frame = 0


Query: 11  YAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFAT 70
           YA LLQ C   K +   K+IHA    +G + +++++ KL   YA    L  A  +F    
Sbjct: 111 YAVLLQECKQRKEYTKGKRIHAQMFVVGFALNEYLKVKLLILYALSGDLQTAGILFRSLK 170

Query: 71  RRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCTGLSSLRLGRQ 130
            R    +NA+I  +    L  + L I+  M  +    D++T   V ++C+ L  L  G++
Sbjct: 171 IRDLIPWNAMISGYVQKGLEQEGLFIYYDMRQNRIVPDQYTFASVFRACSALDRLEHGKR 230

Query: 131 VHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGM 190
            H  ++     +++   +AL+ MY KC       +VFD +  RN ++W++L++GYG HG 
Sbjct: 231 AHAVMIKRCIKSNIIVDSALVDMYFKCSSFSDGHRVFDQLSTRNVITWTSLISGYGYHGK 290

Query: 191 FGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGFDLRPGLEHYT 250
             EV   FE+M EEG +P+ +TF  +LTAC+HGGL+++G E+F  MK  + + P  +HY 
Sbjct: 291 VSEVLKCFEKMKEEGCRPNPVTFLVVLTACNHGGLVDKGWEHFYSMKRDYGIEPEGQHYA 350

Query: 251 CMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRVQTRFMK 307
            MVD LGR G+++EA + +M+   +    +WG+LLGACRIHG  ++ +   T+F++
Sbjct: 351 AMVDTLGRAGRLQEAYEFVMKSPCKEHPPVWGSLLGACRIHGNVKLLELAATKFLE 406

[Close]

BLAST of Cp4.1LG00g01640 vs. TAIR 10
Match: AT4G19191.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 210.3 bits (534), Expect = 2.2e-54
Identity = 108/299 (36.12%), Postives = 167/299 (55.85%), Query Frame = 0


Query: 5   QDIIPFYAALLQACSSTKNHRTLKQ---IHALTIRLGISHHDFIRTKLASTYAACHHLPQ 64
           ++  P  +  +   +S +N  TL Q   IH+  I LG            S Y+       
Sbjct: 250 EEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCS 309

Query: 65  ATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCTG 124
           A  +F   T R    +  +I  ++      ++L++F  M+ SG+  D  TL  ++  C  
Sbjct: 310 ARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGK 369

Query: 125 LSSLRLGRQVHGAVVINGFSTD-LPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 184
             SL  G+ +     I G   D +   NALI MY KCG +  AR +FD  PE+  V+W+ 
Sbjct: 370 FGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTT 429

Query: 185 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 244
           ++AGY ++G+F E   LF +M++   KP+ +TF A+L AC+H G +E+G EYF +MK  +
Sbjct: 430 MIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVY 489

Query: 245 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADR 300
           ++ PGL+HY+CMVDLLGR G++EEA +LI  M  +PD  +WGALL AC+IH   ++A++
Sbjct: 490 NISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQ 548

[Close]

BLAST of Cp4.1LG00g01640 vs. TAIR 10
Match: AT2G33680.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 209.9 bits (533), Expect = 2.9e-54
Identity = 110/283 (38.87%), Postives = 159/283 (56.18%), Query Frame = 0


Query: 14  LLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRP 73
           +L ACS        KQ+H+  ++LG   H F  T L   YA    L  A   F     R 
Sbjct: 328 VLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERD 387

Query: 74  TFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCTGLSSLRLGRQVHG 133
             L+ +LI  +       ++L ++R M  +G   +  T+  VLK+C+ L++L LG+QVHG
Sbjct: 388 VALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHG 447

Query: 134 AVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFGE 193
             + +GF  ++P  +AL TMY KCG L     VF   P ++ VSW+A+++G   +G   E
Sbjct: 448 HTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDE 507

Query: 194 VFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGFDLRPGLEHYTCMV 253
              LFE M+ EG +PD++TF  +++ACSH G +ERG  YF MM     L P ++HY CMV
Sbjct: 508 ALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMV 567

Query: 254 DLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEV 297
           DLL R GQ++EA++ I    I+    LW  LL AC+ HGK E+
Sbjct: 568 DLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCEL 610

The following BLAST results are available for this feature:

BLAST of Cp4.1LG00g01640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STF3	3.2e-58	39.13	Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidop...	[more]
Q9LND4	5.6e-55	35.49	Pentatricopeptide repeat-containing protein At1g06140, mitochondrial OS=Arabidop...	[more]
O23491	8.1e-54	34.80	Pentatricopeptide repeat-containing protein At4g16470 OS=Arabidopsis thaliana OX...	[more]
P0C8Q2	3.1e-53	36.12	Pentatricopeptide repeat-containing protein At4g19191, mitochondrial OS=Arabidop...	[more]
P93005	4.0e-53	38.87	Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana OX...	[more]

BLAST of Cp4.1LG00g01640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023520705.1	5.18e-228	100.00	pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucur...	[more]
KAG7019344.1	8.24e-225	98.38	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
KAG6583697.1	3.36e-224	98.05	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
XP_022927399.1	7.90e-223	97.73	pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucur...	[more]
XP_022973156.1	3.33e-220	96.77	pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucur...	[more]

BLAST of Cp4.1LG00g01640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EHW3	3.83e-223	97.73	pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cuc...	[more]
A0A6J1I7X0	1.61e-220	96.77	pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cuc...	[more]
A0A0A0K1F7	1.39e-200	89.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041310 PE=4 SV=1	[more]
A0A6J1CNN2	1.48e-195	87.25	pentatricopeptide repeat-containing protein At1g06140, mitochondrial-like OS=Mom...	[more]
A0A5A7UT42	4.94e-194	86.32	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Cp4.1LG00g01640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46790.1	2.3e-59	39.13	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G06140.1	4.0e-56	35.49	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G16470.1	5.8e-55	34.80	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G19191.1	2.2e-54	36.12	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G33680.1	2.9e-54	38.87	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 224..307 e-value: 2.2E-12 score: 48.6 coord: 125..223 e-value: 1.4E-23 score: 85.2
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 7..122 e-value: 2.0E-7 score: 32.7
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 76..104 e-value: 0.032 score: 14.5 coord: 248..273 e-value: 1.1E-4 score: 22.2
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 174..221 e-value: 1.5E-10 score: 41.1
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 176..210 e-value: 2.7E-7 score: 28.3 coord: 148..174 e-value: 0.001 score: 17.1 coord: 249..273 e-value: 2.0E-4 score: 19.3
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 174..208 score: 11.575191
None	No IPR available	PANTHER	PTHR47924	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 11..203 coord: 108..306
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..18 score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG00g01640.1	Cp4.1LG00g01640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding