![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
Cp4.1LG00g00400 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAAGTTTTAAATTAATAATTAAATACAAATCACAACAATATATACAATCTGGAAATGGCCCACTTCCATGTTTTCCTTTTTCCTTCTTTTTTTTTGCTTTTTTTTAAAATAAAGTTGTTTTTTATTTACCATTTAAAAAATAAATAAAGCTATTTGATTACCGATTCTATAATTTTTATTTTAACTTTAAAAGGAAAATATAGTTTTAAAAAATACAGCAATAACTAACTTGAGCATAAATTCTTCTGATTTTATTTTTCGTTTCTTGAAAAATACTCATATCAATGAAGATAGTGTCTGACTCATGATCTTCCACTTGGTTAGATACCGTGAGACTCCAACAATTCTCAGCAATCATGTCTTTCTCTCTCTGGGTGTCTATCAAATTAATCCGTCCACTTTTGAAATTATTTATTGAACTATATTTAGCTCTTCCGTTCTTTTATTTTTAAAAATTTAGTGAGTTTATATAGAAAATAAAAAGTTTTTTTTTTTATAGGGTTATGATAAATACATGAAAATATAAAATAATTTATTTAAATTGAAAAAAAAAAATACGACCAACGAATATTCGTTAAATCCATTTGATGTTTTTTGAGGAATCTTTGTCTTTCTCTAACAAAGCTTTGAAGATACTTTTGTCTATGCAACCTTTTTTTTTTTTTTAATTATTAATTATTATTATTATTATTATTTTTGCTAAAAAATTTCTCTTTCTAAATCTTTTTGCCTATCTCTTAAGTTACTCTCTTAACTTTTCTCTCTACAAAAGTCCAATCTCGTCCCTACCTCTAACATGTTTTATTAAAACGTTCCGTTTTTTTATTGTAATAATAATAAAATAATTGTCAAACGAGCCATAATAATTAATTTTAGTATTTCTTAGGAGGCTCGAGTCGCCCACATGATATTATAAAACTAGATTGCATCAAATTCCCTAATGGACATACCATTCTCCTTTTCCTTTGATTTCGTGTCTCCAATCTCTTCCTTCTTCTTCGATGAGGTTATTCGGAATTGAGCTACTCGACCTCCCGACAGGAGGAGAAGAAGAACACAGAGATTCTCCAATGACAGGGCTGTGTGGGAATCTTGATGACAGACCAATGAGGAGCAAGAGAAGGTTCCAGTGTCAGTACTGTTTGAAGGAGTTCACGAACTCACAGGCACTGGGAGGTCACCAGAACGCCCACAAGAAGGAGAGGTTGAAGAAGAAGATGCTCCAAATACAAGCACAAAACTCCAGCCTTTGTCATTACCTTCAAAACTATTATAATTCCCATTTTGCCCCTGAATCTGATGGGCGCCACATCAGCTTTGGCTTCAGCTTCCGTCGTGCCGCCCACACCAAACCTATTCTGGTAAATTTCATGTCTGCCCATTCTTGTAATTTCAACCAAACCCCTTAAATCTCTATGTATTAATATTTGATTTCATGAATTAAAGTTTGGGATGGACTAA ATGAAATCCAATCTCGTCCCTACCTCTAACATGTTATTCGGAATTGAGCTACTCGACCTCCCGACAGGAGGAGAAGAAGAACACAGAGATTCTCCAATGACAGGGCTGTGTGGGAATCTTGATGACAGACCAATGAGGAGCAAGAGAAGGTTCCAGTGTCAGTACTGTTTGAAGGAGTTCACGAACTCACAGGCACTGGGAGGTCACCAGAACGCCCACAAGAAGGAGAGGTTGAAGAAGAAGATGCTCCAAATACAAGCACAAAACTCCAGCCTTTGTCATTACCTTCAAAACTATTATAATTCCCATTTTGCCCCTGAATCTGATGGGCGCCACATCAGCTTTGGCTTCAGCTTCCGTCGTGCCGCCCACACCAAACCTATTCTGTTTGGGATGGACTAA ATGAAATCCAATCTCGTCCCTACCTCTAACATGTTATTCGGAATTGAGCTACTCGACCTCCCGACAGGAGGAGAAGAAGAACACAGAGATTCTCCAATGACAGGGCTGTGTGGGAATCTTGATGACAGACCAATGAGGAGCAAGAGAAGGTTCCAGTGTCAGTACTGTTTGAAGGAGTTCACGAACTCACAGGCACTGGGAGGTCACCAGAACGCCCACAAGAAGGAGAGGTTGAAGAAGAAGATGCTCCAAATACAAGCACAAAACTCCAGCCTTTGTCATTACCTTCAAAACTATTATAATTCCCATTTTGCCCCTGAATCTGATGGGCGCCACATCAGCTTTGGCTTCAGCTTCCGTCGTGCCGCCCACACCAAACCTATTCTGTTTGGGATGGACTAA MKSNLVPTSNMLFGIELLDLPTGGEEEHRDSPMTGLCGNLDDRPMRSKRRFQCQYCLKEFTNSQALGGHQNAHKKERLKKKMLQIQAQNSSLCHYLQNYYNSHFAPESDGRHISFGFSFRRAAHTKPILFGMD Homology
BLAST of Cp4.1LG00g00400 vs. ExPASy Swiss-Prot
Match: Q39264 (Zinc finger protein 5 OS=Arabidopsis thaliana OX=3702 GN=ZFP5 PE=1 SV=1) HSP 1 Score: 82.4 bits (202), Expect = 4.2e-15 Identity = 42/88 (47.73%), Postives = 56/88 (63.64%), Query Frame = 0
BLAST of Cp4.1LG00g00400 vs. ExPASy Swiss-Prot
Match: Q9C9H1 (Zinc finger protein GIS3 OS=Arabidopsis thaliana OX=3702 GN=GIS3 PE=1 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 1.2e-09 Identity = 34/68 (50.00%), Postives = 44/68 (64.71%), Query Frame = 0
BLAST of Cp4.1LG00g00400 vs. ExPASy Swiss-Prot
Match: Q39265 (Zinc finger protein 6 OS=Arabidopsis thaliana OX=3702 GN=ZFP6 PE=2 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 1.5e-09 Identity = 38/96 (39.58%), Postives = 50/96 (52.08%), Query Frame = 0
BLAST of Cp4.1LG00g00400 vs. ExPASy Swiss-Prot
Match: Q9FG05 (Zinc finger protein GIS2 OS=Arabidopsis thaliana OX=3702 GN=GIS2 PE=2 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 1.7e-08 Identity = 32/88 (36.36%), Postives = 45/88 (51.14%), Query Frame = 0
BLAST of Cp4.1LG00g00400 vs. ExPASy Swiss-Prot
Match: Q84WI0 (Zinc finger protein GIS OS=Arabidopsis thaliana OX=3702 GN=GIS PE=1 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 3.8e-08 Identity = 27/56 (48.21%), Postives = 35/56 (62.50%), Query Frame = 0
BLAST of Cp4.1LG00g00400 vs. NCBI nr
Match: XP_023520460.1 (zinc finger protein 5-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 246 bits (629), Expect = 6.12e-82 Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0
BLAST of Cp4.1LG00g00400 vs. NCBI nr
Match: KAG7029982.1 (Zinc finger protein GIS3, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 235 bits (599), Expect = 2.22e-77 Identity = 115/119 (96.64%), Postives = 116/119 (97.48%), Query Frame = 0
BLAST of Cp4.1LG00g00400 vs. NCBI nr
Match: KAG6599021.1 (Zinc finger protein GIS3, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 233 bits (593), Expect = 1.95e-76 Identity = 114/119 (95.80%), Postives = 115/119 (96.64%), Query Frame = 0
BLAST of Cp4.1LG00g00400 vs. NCBI nr
Match: XP_038889251.1 (zinc finger protein 5-like [Benincasa hispida]) HSP 1 Score: 141 bits (355), Expect = 5.19e-40 Identity = 74/104 (71.15%), Postives = 80/104 (76.92%), Query Frame = 0
BLAST of Cp4.1LG00g00400 vs. NCBI nr
Match: XP_004143824.1 (zinc finger protein 5 [Cucumis sativus] >KGN51556.2 hypothetical protein Csa_008977 [Cucumis sativus]) HSP 1 Score: 136 bits (343), Expect = 5.22e-38 Identity = 76/120 (63.33%), Postives = 86/120 (71.67%), Query Frame = 0
BLAST of Cp4.1LG00g00400 vs. ExPASy TrEMBL
Match: A0A5A7TC61 (Zinc finger protein 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2612G00110 PE=4 SV=1) HSP 1 Score: 132 bits (331), Expect = 1.87e-36 Identity = 75/125 (60.00%), Postives = 85/125 (68.00%), Query Frame = 0
BLAST of Cp4.1LG00g00400 vs. ExPASy TrEMBL
Match: A0A0A0KNG0 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G477610 PE=4 SV=1) HSP 1 Score: 113 bits (283), Expect = 5.13e-30 Identity = 56/75 (74.67%), Postives = 63/75 (84.00%), Query Frame = 0
BLAST of Cp4.1LG00g00400 vs. ExPASy TrEMBL
Match: A0A6J1DUD1 (zinc finger protein 5-like OS=Momordica charantia OX=3673 GN=LOC111024100 PE=4 SV=1) HSP 1 Score: 115 bits (288), Expect = 5.81e-30 Identity = 66/122 (54.10%), Postives = 81/122 (66.39%), Query Frame = 0
BLAST of Cp4.1LG00g00400 vs. ExPASy TrEMBL
Match: A0A251U1C5 (Putative zinc finger C2H2-type/integrase DNA-binding domain-containing protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr08g0209051 PE=4 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 1.57e-20 Identity = 55/111 (49.55%), Postives = 71/111 (63.96%), Query Frame = 0
BLAST of Cp4.1LG00g00400 vs. ExPASy TrEMBL
Match: A0A7J7D454 (Putative C2H2 and C2HC zinc fingers superfamily protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW10G00034 PE=4 SV=1) HSP 1 Score: 88.6 bits (218), Expect = 4.62e-19 Identity = 48/94 (51.06%), Postives = 61/94 (64.89%), Query Frame = 0
BLAST of Cp4.1LG00g00400 vs. TAIR 10
Match: AT1G10480.1 (zinc finger protein 5 ) HSP 1 Score: 82.4 bits (202), Expect = 3.0e-16 Identity = 42/88 (47.73%), Postives = 56/88 (63.64%), Query Frame = 0
BLAST of Cp4.1LG00g00400 vs. TAIR 10
Match: AT1G68360.1 (C2H2 and C2HC zinc fingers superfamily protein ) HSP 1 Score: 64.3 bits (155), Expect = 8.4e-11 Identity = 34/68 (50.00%), Postives = 44/68 (64.71%), Query Frame = 0
BLAST of Cp4.1LG00g00400 vs. TAIR 10
Match: AT1G67030.1 (zinc finger protein 6 ) HSP 1 Score: 63.9 bits (154), Expect = 1.1e-10 Identity = 38/96 (39.58%), Postives = 50/96 (52.08%), Query Frame = 0
BLAST of Cp4.1LG00g00400 vs. TAIR 10
Match: AT5G06650.1 (C2H2 and C2HC zinc fingers superfamily protein ) HSP 1 Score: 60.5 bits (145), Expect = 1.2e-09 Identity = 32/88 (36.36%), Postives = 45/88 (51.14%), Query Frame = 0
BLAST of Cp4.1LG00g00400 vs. TAIR 10
Match: AT3G58070.1 (C2H2 and C2HC zinc fingers superfamily protein ) HSP 1 Score: 59.3 bits (142), Expect = 2.7e-09 Identity = 27/56 (48.21%), Postives = 35/56 (62.50%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|