CmoCh20G011740 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh20G011740
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionSynechocystis YCF37
LocationCmo_Chr20: 11555964 .. 11556464 (-)
RNA-Seq ExpressionCmoCh20G011740
SyntenyCmoCh20G011740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCACAATCTCACCCATTCTCCAAATCCTCCAACCACGATGCCGATTAAACATCACCGTCCGCGCCGCCTCAGTGAAACCACCGCCGGAATCTCTCTCTGCCGCCAGAACTCGGCGACAGACACTGTTGATTCTTACGGCGACGGCGACGGCGGCGGTAGTGGGGAGAGAGAATCCGTCAATGGCAGAGGACATTCCTCTGTTCGGGCTGAGGAAGAAGCTGAAGAAGGTGGAAGAGGAGGCGGAGGAGATCGTGAGGGAAGGATTCGAGGCGGCGGAGAAAGGACTTGAGACGGCGGAGCGAGGGATCGTTACGGCGGAGAAGGGCATTATAACGGCGGAGAGAGGGATCGAAACGGCGGAGAAAGAAATCGAATCAGCGGTGAATTTCGGAGCTCTGTCGCAGGCCGGAGCGGTCGCTGGAGCTGAGGTCGTCGGAGTGCTTGTTGCTACTTCAATTGTTAATGGTATTTTGGGTCCTGAAGCGCAGAGATAA

mRNA sequence

ATGGCTTCCACAATCTCACCCATTCTCCAAATCCTCCAACCACGATGCCGATTAAACATCACCGTCCGCGCCGCCTCAGTGAAACCACCGCCGGAATCTCTCTCTGCCGCCAGAACTCGGCGACAGACACTGTTGATTCTTACGGCGACGGCGACGGCGGCGGTAGTGGGGAGAGAGAATCCGTCAATGGCAGAGGACATTCCTCTGTTCGGGCTGAGGAAGAAGCTGAAGAAGGTGGAAGAGGAGGCGGAGGAGATCGTGAGGGAAGGATTCGAGGCGGCGGAGAAAGGACTTGAGACGGCGGAGCGAGGGATCGTTACGGCGGAGAAGGGCATTATAACGGCGGAGAGAGGGATCGAAACGGCGGAGAAAGAAATCGAATCAGCGGTGAATTTCGGAGCTCTGTCGCAGGCCGGAGCGGTCGCTGGAGCTGAGGTCGTCGGAGTGCTTGTTGCTACTTCAATTGTTAATGGTATTTTGGGTCCTGAAGCGCAGAGATAA

Coding sequence (CDS)

ATGGCTTCCACAATCTCACCCATTCTCCAAATCCTCCAACCACGATGCCGATTAAACATCACCGTCCGCGCCGCCTCAGTGAAACCACCGCCGGAATCTCTCTCTGCCGCCAGAACTCGGCGACAGACACTGTTGATTCTTACGGCGACGGCGACGGCGGCGGTAGTGGGGAGAGAGAATCCGTCAATGGCAGAGGACATTCCTCTGTTCGGGCTGAGGAAGAAGCTGAAGAAGGTGGAAGAGGAGGCGGAGGAGATCGTGAGGGAAGGATTCGAGGCGGCGGAGAAAGGACTTGAGACGGCGGAGCGAGGGATCGTTACGGCGGAGAAGGGCATTATAACGGCGGAGAGAGGGATCGAAACGGCGGAGAAAGAAATCGAATCAGCGGTGAATTTCGGAGCTCTGTCGCAGGCCGGAGCGGTCGCTGGAGCTGAGGTCGTCGGAGTGCTTGTTGCTACTTCAATTGTTAATGGTATTTTGGGTCCTGAAGCGCAGAGATAA

Protein sequence

MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGRENPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIETAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR
Homology
BLAST of CmoCh20G011740 vs. ExPASy TrEMBL
Match: A0A6J1EIT8 (uncharacterized protein LOC111434949 OS=Cucurbita moschata OX=3662 GN=LOC111434949 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.2e-77
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0

Query: 1   MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGREN 60
           MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGREN
Sbjct: 1   MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGREN 60

Query: 61  PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE 120
           PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE
Sbjct: 61  PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE 120

Query: 121 TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR 167
           TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR
Sbjct: 121 TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR 166

BLAST of CmoCh20G011740 vs. ExPASy TrEMBL
Match: A0A6J1I9D9 (uncharacterized protein LOC111470397 OS=Cucurbita maxima OX=3661 GN=LOC111470397 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.2e-75
Identity = 163/165 (98.79%), Postives = 164/165 (99.39%), Query Frame = 0

Query: 1   MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGREN 60
           MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGREN
Sbjct: 1   MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGREN 60

Query: 61  PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE 120
           PSMAE+IPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE
Sbjct: 61  PSMAENIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE 120

Query: 121 TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQ 166
           TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPE Q
Sbjct: 121 TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEGQ 165

BLAST of CmoCh20G011740 vs. ExPASy TrEMBL
Match: A0A0A0LJU7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G292190 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 2.1e-67
Identity = 151/166 (90.96%), Postives = 157/166 (94.58%), Query Frame = 0

Query: 1   MAST-ISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGRE 60
           MAST ISP LQIL+PRCRL+ TVRAA+VK P ESLSA+RTRRQTLL LTATATAAVVGRE
Sbjct: 1   MASTAISPALQILRPRCRLSNTVRAAAVKSPSESLSASRTRRQTLLFLTATATAAVVGRE 60

Query: 61  NPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGI 120
           NPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGII AER I
Sbjct: 61  NPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIIAAEREI 120

Query: 121 ETAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQ 166
           ETAEKEIE+AVNFGALSQAGAVAGAEVVGVL+ATSIVNGILGPE Q
Sbjct: 121 ETAEKEIETAVNFGALSQAGAVAGAEVVGVLIATSIVNGILGPEGQ 166

BLAST of CmoCh20G011740 vs. ExPASy TrEMBL
Match: A0A5D3CRC5 (Synechocystis YCF37 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G002670 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.6e-65
Identity = 149/166 (89.76%), Postives = 156/166 (93.98%), Query Frame = 0

Query: 1   MAST-ISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGRE 60
           MAST ISP LQIL+PRCRL+ TVRAA+VKPP ESLSA+RTRRQTLL L  TATAAVVGRE
Sbjct: 1   MASTAISPALQILRPRCRLSNTVRAAAVKPPSESLSASRTRRQTLLFL--TATAAVVGRE 60

Query: 61  NPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGI 120
           NPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGII AER I
Sbjct: 61  NPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIIAAEREI 120

Query: 121 ETAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQ 166
           ETAEKEIE+AV+FGALSQAGAVAGAEVVGVL+ATSIVNGILGPE Q
Sbjct: 121 ETAEKEIETAVSFGALSQAGAVAGAEVVGVLIATSIVNGILGPEGQ 164

BLAST of CmoCh20G011740 vs. ExPASy TrEMBL
Match: A0A1S3C6G5 (uncharacterized protein LOC103497439 OS=Cucumis melo OX=3656 GN=LOC103497439 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.6e-65
Identity = 149/166 (89.76%), Postives = 156/166 (93.98%), Query Frame = 0

Query: 1   MAST-ISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGRE 60
           MAST ISP LQIL+PRCRL+ TVRAA+VKPP ESLSA+RTRRQTLL L  TATAAVVGRE
Sbjct: 1   MASTAISPALQILRPRCRLSNTVRAAAVKPPSESLSASRTRRQTLLFL--TATAAVVGRE 60

Query: 61  NPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGI 120
           NPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGII AER I
Sbjct: 61  NPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIIAAEREI 120

Query: 121 ETAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQ 166
           ETAEKEIE+AV+FGALSQAGAVAGAEVVGVL+ATSIVNGILGPE Q
Sbjct: 121 ETAEKEIETAVSFGALSQAGAVAGAEVVGVLIATSIVNGILGPEGQ 164

BLAST of CmoCh20G011740 vs. NCBI nr
Match: XP_022928047.1 (uncharacterized protein LOC111434949 [Cucurbita moschata] >XP_023512058.1 uncharacterized protein LOC111776892 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 298.1 bits (762), Expect = 4.6e-77
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0

Query: 1   MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGREN 60
           MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGREN
Sbjct: 1   MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGREN 60

Query: 61  PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE 120
           PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE
Sbjct: 61  PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE 120

Query: 121 TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR 167
           TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR
Sbjct: 121 TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR 166

BLAST of CmoCh20G011740 vs. NCBI nr
Match: XP_022971729.1 (uncharacterized protein LOC111470397 [Cucurbita maxima])

HSP 1 Score: 292.4 bits (747), Expect = 2.5e-75
Identity = 163/165 (98.79%), Postives = 164/165 (99.39%), Query Frame = 0

Query: 1   MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGREN 60
           MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGREN
Sbjct: 1   MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGREN 60

Query: 61  PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE 120
           PSMAE+IPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE
Sbjct: 61  PSMAENIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE 120

Query: 121 TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQ 166
           TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPE Q
Sbjct: 121 TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEGQ 165

BLAST of CmoCh20G011740 vs. NCBI nr
Match: KAG6571416.1 (hypothetical protein SDJN03_30331, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011180.1 hypothetical protein SDJN02_27978, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 288.5 bits (737), Expect = 3.7e-74
Identity = 163/166 (98.19%), Postives = 163/166 (98.19%), Query Frame = 0

Query: 1   MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGREN 60
           MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLIL  TAT AVVGREN
Sbjct: 1   MASTISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLIL--TATGAVVGREN 60

Query: 61  PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE 120
           PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE
Sbjct: 61  PSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGIE 120

Query: 121 TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR 167
           TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR
Sbjct: 121 TAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR 164

BLAST of CmoCh20G011740 vs. NCBI nr
Match: XP_004148045.1 (uncharacterized protein LOC101208092 [Cucumis sativus] >KGN62038.1 hypothetical protein Csa_006379 [Cucumis sativus])

HSP 1 Score: 265.0 bits (676), Expect = 4.3e-67
Identity = 151/166 (90.96%), Postives = 157/166 (94.58%), Query Frame = 0

Query: 1   MAST-ISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTATATAAVVGRE 60
           MAST ISP LQIL+PRCRL+ TVRAA+VK P ESLSA+RTRRQTLL LTATATAAVVGRE
Sbjct: 1   MASTAISPALQILRPRCRLSNTVRAAAVKSPSESLSASRTRRQTLLFLTATATAAVVGRE 60

Query: 61  NPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERGI 120
           NPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGII AER I
Sbjct: 61  NPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIIAAEREI 120

Query: 121 ETAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQ 166
           ETAEKEIE+AVNFGALSQAGAVAGAEVVGVL+ATSIVNGILGPE Q
Sbjct: 121 ETAEKEIETAVNFGALSQAGAVAGAEVVGVLIATSIVNGILGPEGQ 166

BLAST of CmoCh20G011740 vs. NCBI nr
Match: XP_038900735.1 (uncharacterized protein LOC120087852 [Benincasa hispida])

HSP 1 Score: 259.2 bits (661), Expect = 2.4e-65
Identity = 150/167 (89.82%), Postives = 156/167 (93.41%), Query Frame = 0

Query: 1   MAST-ISPILQILQPRCRLNITVRAASVKPPPESLSAARTRRQTLLILTAT-ATAAVVGR 60
           MAST ISP+LQIL  RCRLNITVRAA+VK  PESLSA RTRRQTLL LTAT A AAVVGR
Sbjct: 1   MASTAISPVLQILPSRCRLNITVRAAAVKSLPESLSARRTRRQTLLFLTATAAAAAVVGR 60

Query: 61  ENPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGIITAERG 120
           ENPS+AEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAE+GI+ AERG
Sbjct: 61  ENPSVAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEQGIVAAERG 120

Query: 121 IETAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQ 166
           IETAEKEIE+AVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPE Q
Sbjct: 121 IETAEKEIETAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEGQ 167

BLAST of CmoCh20G011740 vs. TAIR 10
Match: AT2G23670.1 (homolog of Synechocystis YCF37 )

HSP 1 Score: 146.0 bits (367), Expect = 2.7e-35
Identity = 99/174 (56.90%), Postives = 118/174 (67.82%), Query Frame = 0

Query: 1   MASTISPIL-----QILQPRC--RLNITVRAA-SVKPPPESLSAARTRRQTLLILTATAT 60
           MAST+S  L       LQ RC    +++ RAA S KP   S S     R+ LL  + TA 
Sbjct: 1   MASTVSLSLLSGGSGALQARCARTAHVSPRAAHSNKPALSSFSLTGASRRNLL-FSLTAA 60

Query: 61  AAVVGRENPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKGLETAERGIVTAEKGI 120
             V G +  SMAE+IPLFG+RKKLKK EEEA EIV+EGFE AEKG++        AEKG+
Sbjct: 61  TVVTGLQPASMAENIPLFGIRKKLKKAEEEAVEIVKEGFETAEKGVD-------AAEKGL 120

Query: 121 ITAERGIETAEKEIESAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQR 167
             AERG+ETAEKEI +AV+F  L+QAGAV  AE VGVLVATS+VNGILGPEAQ+
Sbjct: 121 EAAERGVETAEKEIVTAVSFNGLTQAGAVVAAEFVGVLVATSVVNGILGPEAQK 166

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1EIT82.2e-77100.00uncharacterized protein LOC111434949 OS=Cucurbita moschata OX=3662 GN=LOC1114349... [more]
A0A6J1I9D91.2e-7598.79uncharacterized protein LOC111470397 OS=Cucurbita maxima OX=3661 GN=LOC111470397... [more]
A0A0A0LJU72.1e-6790.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G292190 PE=4 SV=1[more]
A0A5D3CRC52.6e-6589.76Synechocystis YCF37 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G... [more]
A0A1S3C6G52.6e-6589.76uncharacterized protein LOC103497439 OS=Cucumis melo OX=3656 GN=LOC103497439 PE=... [more]
Match NameE-valueIdentityDescription
XP_022928047.14.6e-77100.00uncharacterized protein LOC111434949 [Cucurbita moschata] >XP_023512058.1 unchar... [more]
XP_022971729.12.5e-7598.79uncharacterized protein LOC111470397 [Cucurbita maxima][more]
KAG6571416.13.7e-7498.19hypothetical protein SDJN03_30331, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_004148045.14.3e-6790.96uncharacterized protein LOC101208092 [Cucumis sativus] >KGN62038.1 hypothetical ... [more]
XP_038900735.12.4e-6589.82uncharacterized protein LOC120087852 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
AT2G23670.12.7e-3556.90homolog of Synechocystis YCF37 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 69..89
NoneNo IPR availablePANTHERPTHR36734YCF37-LIKE PROTEINcoord: 1..165

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G011740.1CmoCh20G011740.1mRNA