CmoCh20G011710 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh20G011710
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionB3 domain-containing transcription factor VRN1-like
LocationCmo_Chr20: 11514073 .. 11514965 (+)
RNA-Seq ExpressionCmoCh20G011710
SyntenyCmoCh20G011710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCTCTTTCGAGTCCGCCACGCCCCATTTCTTCAAGGTCATTCTCCCACAAACCCTCAATCAATCAAAGCTTGTAAGTTCTTCATCTCTTCCACCATTGTTCCTTTTCATAATCCGTATTATCAAATGGGGTTTTAAAAATTTGTGTTTTTTTCAGGCTATTCCGCACAAATTCGTTAGAAAACATGGGGAGGCCTTGGAAACTGAAGAGGTGCGTCTTAAGGTAGCGAGTGGGGCAGAATGGAAAGTGGGTTTGACAAAAAACGATGAAAAAATATGGTTTGAAAAAGGATGGGAAGAGTTTGTGAAGTTTTACAGCGTTGAAATTGGTCATTTTTTGACGTTTAGATACGAAGGAAACTCATGCTTCCATGTTGTTATATTCGATAAAACCGCTTCGGAGATTGAGTATCCATTAGGTTGTGGAGGGAAAGTTAAAAAAAGGGAGAGGTTTTCAATTAGTGAAGAAGCCACAAAGTTCCAATCTTTAACGACGAATCCTTCATTTATGGTAACAATGGGAGCTTCGTATCTTCATACAGGGAAGAGCTATCTGGTAATGATCTTCTTATTTGTTGTTTGTTGTTATGAGATTGTTGGTTTGATTGAATTTGGGTGTTGTTGTAGAGTATTCCACAATGGTTTGCAAATGCCCACATGGAGAGTCCGAAGGAGATGAGTGTTGAAGTGTCGGATGGAAGGGTTTGGAAGATCTTGTGCGGTGAAAGGTGGCCTCATGGTGTGAAGAGGGTGGAAATGAGAGGGGGTTGGAGGGATTTTGCGAGAGATAATGGGTTGAAAAAGGGTGATATTTGTGTGTTTGAGTTGATGGAAACCAGTGAGCTATCGTTTAAAGCTACCATTTTTCGATCGGGGTGTCGAGGTTGA

mRNA sequence

ATGGCTTCCTCTTTCGAGTCCGCCACGCCCCATTTCTTCAAGGTCATTCTCCCACAAACCCTCAATCAATCAAAGCTTGCTATTCCGCACAAATTCGTTAGAAAACATGGGGAGGCCTTGGAAACTGAAGAGGTGCGTCTTAAGGTAGCGAGTGGGGCAGAATGGAAAGTGGGTTTGACAAAAAACGATGAAAAAATATGGTTTGAAAAAGGATGGGAAGAGTTTGTGAAGTTTTACAGCGTTGAAATTGGTCATTTTTTGACGTTTAGATACGAAGGAAACTCATGCTTCCATGTTGTTATATTCGATAAAACCGCTTCGGAGATTGAGTATCCATTAGGTTGTGGAGGGAAAGTTAAAAAAAGGGAGAGGTTTTCAATTAGTGAAGAAGCCACAAAGTTCCAATCTTTAACGACGAATCCTTCATTTATGGTAACAATGGGAGCTTCGTATCTTCATACAGGGAAGAGCTATCTGAGTATTCCACAATGGTTTGCAAATGCCCACATGGAGAGTCCGAAGGAGATGAGTGTTGAAGTGTCGGATGGAAGGGTTTGGAAGATCTTGTGCGGTGAAAGGTGGCCTCATGGTGTGAAGAGGGTGGAAATGAGAGGGGGTTGGAGGGATTTTGCGAGAGATAATGGGTTGAAAAAGGGTGATATTTGTGTGTTTGAGTTGATGGAAACCAGTGAGCTATCGTTTAAAGCTACCATTTTTCGATCGGGGTGTCGAGGTTGA

Coding sequence (CDS)

ATGGCTTCCTCTTTCGAGTCCGCCACGCCCCATTTCTTCAAGGTCATTCTCCCACAAACCCTCAATCAATCAAAGCTTGCTATTCCGCACAAATTCGTTAGAAAACATGGGGAGGCCTTGGAAACTGAAGAGGTGCGTCTTAAGGTAGCGAGTGGGGCAGAATGGAAAGTGGGTTTGACAAAAAACGATGAAAAAATATGGTTTGAAAAAGGATGGGAAGAGTTTGTGAAGTTTTACAGCGTTGAAATTGGTCATTTTTTGACGTTTAGATACGAAGGAAACTCATGCTTCCATGTTGTTATATTCGATAAAACCGCTTCGGAGATTGAGTATCCATTAGGTTGTGGAGGGAAAGTTAAAAAAAGGGAGAGGTTTTCAATTAGTGAAGAAGCCACAAAGTTCCAATCTTTAACGACGAATCCTTCATTTATGGTAACAATGGGAGCTTCGTATCTTCATACAGGGAAGAGCTATCTGAGTATTCCACAATGGTTTGCAAATGCCCACATGGAGAGTCCGAAGGAGATGAGTGTTGAAGTGTCGGATGGAAGGGTTTGGAAGATCTTGTGCGGTGAAAGGTGGCCTCATGGTGTGAAGAGGGTGGAAATGAGAGGGGGTTGGAGGGATTTTGCGAGAGATAATGGGTTGAAAAAGGGTGATATTTGTGTGTTTGAGTTGATGGAAACCAGTGAGCTATCGTTTAAAGCTACCATTTTTCGATCGGGGTGTCGAGGTTGA

Protein sequence

MASSFESATPHFFKVILPQTLNQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLTKNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVKKRERFSISEEATKFQSLTTNPSFMVTMGASYLHTGKSYLSIPQWFANAHMESPKEMSVEVSDGRVWKILCGERWPHGVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFRSGCRG
Homology
[Close]
BLAST of CmoCh20G011710 vs. ExPASy Swiss-Prot
Match: Q8L3W1 (B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana OX=3702 GN=VRN1 PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.8e-25
Identity = 95/341 (27.86%), Postives = 134/341 (39.30%), Query Frame = 0 

Query: 10  PHFFKVILPQTLNQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLTKNDEKIWFE 69
           P F K+I   T+ + +L +P KFV K  + L    V L V  G  W+VGL K D KIWF+
Sbjct: 4   PFFHKLIFSSTIQEKRLRVPDKFVSKFKDELSV-AVALTVPDGHVWRVGLRKADNKIWFQ 63

Query: 70  KGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEY------------------ 129
            GW+EFV  YS+ IG+ L FRYEGNS F V IF+ + SEI Y                  
Sbjct: 64  DGWQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINYHSTGLMDSAHNHFKRARL 123

Query: 130 ---------------------------PLGCG---------------------------- 189
                                      P   G                            
Sbjct: 124 FEDLEDEDAEVIFPSSVYPSPLPESTVPANKGYASSAIQTLFTGPVKAEEPTPTPKIPKK 183

Query: 190 -GKVKK-------------------RERFSISEEATKFQSLT----------------TN 241
            G+ KK                   R +F  S  A K +++T                TN
Sbjct: 184 RGRKKKNADPEEINSSAPRDDDPENRSKFYESASARK-RTVTAEERERAINAAKTFEPTN 243

[Close]
BLAST of CmoCh20G011710 vs. ExPASy Swiss-Prot
Match: Q84R27 (B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana OX=3702 GN=At3g18960 PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.8e-19
Identity = 46/108 (42.59%), Postives = 68/108 (62.96%), Query Frame = 0 

Query: 6   ESATPHFFKVILPQTLNQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLTKNDEK 65
           ES    FFK++LP T+    + IP +FV+  G  L +E V L+  +G +  + L +  E+
Sbjct: 24  ESPVKKFFKLVLPSTMKDKMMKIPPRFVKLQGSKL-SEVVTLETPAGFKRSIKLKRIGEE 83

Query: 66  IWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPL 114
           IWF +GW EF + +S+E GHFL F Y+ NS F V+IF+ +A E +YPL
Sbjct: 84  IWFHEGWSEFAEAHSIEEGHFLLFEYKENSSFRVIIFNVSACETKYPL 130

[Close]
BLAST of CmoCh20G011710 vs. ExPASy Swiss-Prot
Match: Q9XIB4 (B3 domain-containing protein At1g49475 OS=Arabidopsis thaliana OX=3702 GN=At1g49475 PE=2 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 8.8e-19
Identity = 48/108 (44.44%), Postives = 68/108 (62.96%), Query Frame = 0 

Query: 6   ESATPHFFKVILPQTLNQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLTKNDEK 65
           E     F K+IL   + +  + +P +FVR  G  L T+ V L+   G +  + + +  ++
Sbjct: 28  EPTVKKFIKIILLSRIIEKMMKVPARFVR-FGPKL-TDNVTLQTPVGFKRSIRIKRIGDE 87

Query: 66  IWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPL 114
           +WFEKGW EF + +S+  GHFL F YEG+SCF VVIFD +ASEIEYPL
Sbjct: 88  VWFEKGWSEFAEAHSLSDGHFLFFHYEGDSCFRVVIFDVSASEIEYPL 133

[Close]
BLAST of CmoCh20G011710 vs. ExPASy Swiss-Prot
Match: Q9ZSH7 (B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana OX=3702 GN=At4g01580 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.5e-18
Identity = 46/108 (42.59%), Postives = 66/108 (61.11%), Query Frame = 0 

Query: 6   ESATPHFFKVILPQTLNQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLTKNDEK 65
           ES    FFK++LP T+    + IP +FV+  G  L +E V L   +G +  + L +  E+
Sbjct: 24  ESPVKKFFKLVLPSTMKDKMMRIPPRFVKLQGSKL-SEVVTLVTPAGYKRSIKLKRIGEE 83

Query: 66  IWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPL 114
           IWF +GW EF + +S+E GHFL F Y+ NS F V+IF+ +A E  YPL
Sbjct: 84  IWFHEGWSEFAEAHSIEEGHFLLFEYKKNSSFRVIIFNASACETNYPL 130

[Close]
BLAST of CmoCh20G011710 vs. ExPASy Swiss-Prot
Match: O81778 (B3 domain-containing protein REM9 OS=Arabidopsis thaliana OX=3702 GN=REM9 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.7e-14
Identity = 65/240 (27.08%), Postives = 108/240 (45.00%), Query Frame = 0 

Query: 2   ASSFESATPHFFKVILPQTLNQSKLAIPHKFVRKHGEAL-ETEEVRLKV-ASGAEWKVGL 61
           AS       HFF+ +LP    QS L IP  +  +H E   E + V L+  AS   W+V +
Sbjct: 4   ASPLSPTNQHFFQPLLPGF--QSNLKIPVNYFSEHIEGKHEGKTVTLRTDASERTWEVKM 63

Query: 62  TKNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGC---G 121
               E     +GW+EFV+ + + IG F+ FR+EG+  FHV     +  EI+YP       
Sbjct: 64  ----EGHRLTEGWKEFVEAHDLRIGDFVVFRHEGDMVFHVTALGPSCCEIQYPQSSRHEE 123

Query: 122 GKVKKRERFSISEEATKFQSLTTNPSF---MVTMGASYLHTGKSYLSIPQWFA--NAHME 181
           G+       S  E     Q  +   S      +   ++ +  +  +S+P+ F   +   +
Sbjct: 124 GEESGENEISEKEGEENVQKESDKSSSDLNCFSQSVTHSNISRDAVSVPRDFVKRSGFSK 183

Query: 182 SPKEMSVEVSDGRVWKILCGERWPHGVKRVEMRGGWRDFARDNGLKKGDICVFELMETSE 232
              E+ +   +G+ W+    E   +    V + GGW  F  +N L  GD C F+L++ ++
Sbjct: 184 GRHEIVLMNEEGKSWE---SEVKSYMSGAVYLVGGWTTFCTENKLDVGDSCTFKLLQKAK 234

[Close]
BLAST of CmoCh20G011710 vs. ExPASy TrEMBL
Match: A0A6J1EJA7 (B3 domain-containing transcription factor VRN1-like OS=Cucurbita moschata OX=3662 GN=LOC111434979 PE=4 SV=1)

HSP 1 Score: 512.3 bits (1318), Expect = 1.1e-141
Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 0 

Query: 1   MASSFESATPHFFKVILPQTLNQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLT 60
           MASSFESATPHFFKVILPQTLNQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLT
Sbjct: 1   MASSFESATPHFFKVILPQTLNQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLT 60

Query: 61  KNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK 120
           KNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK
Sbjct: 61  KNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK 120

Query: 121 KRERFSISEEATKFQSLTTNPSFMVTMGASYLHTGKSYLSIPQWFANAHMESPKEMSVEV 180
           KRERFSISEEATKFQSLTTNPSFMVTMGASYLHTGKSYLSIPQWFANAHMESPKEMSVEV
Sbjct: 121 KRERFSISEEATKFQSLTTNPSFMVTMGASYLHTGKSYLSIPQWFANAHMESPKEMSVEV 180

Query: 181 SDGRVWKILCGERWPHGVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR 240
           SDGRVWKILCGERWPHGVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR
Sbjct: 181 SDGRVWKILCGERWPHGVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR 240

Query: 241 SGCRG 246
           SGCRG
Sbjct: 241 SGCRG 245

[Close]
BLAST of CmoCh20G011710 vs. ExPASy TrEMBL
Match: A0A6J1I6H9 (B3 domain-containing transcription factor VRN1-like OS=Cucurbita maxima OX=3661 GN=LOC111470377 PE=4 SV=1)

HSP 1 Score: 497.3 bits (1279), Expect = 3.7e-137
Identity = 239/245 (97.55%), Postives = 241/245 (98.37%), Query Frame = 0 

Query: 1   MASSFESATPHFFKVILPQTLNQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLT 60
           MASSFESATPHFFKVILPQTL QSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLT
Sbjct: 1   MASSFESATPHFFKVILPQTLIQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLT 60

Query: 61  KNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK 120
           KNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK
Sbjct: 61  KNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK 120

Query: 121 KRERFSISEEATKFQSLTTNPSFMVTMGASYLHTGKSYLSIPQWFANAHMESPKEMSVEV 180
           KRERFSI+EEATKFQSLT NPSFMVTMGASYLHTGKSYLSIP WFANAHMESPKEM+VEV
Sbjct: 121 KRERFSITEEATKFQSLTMNPSFMVTMGASYLHTGKSYLSIPLWFANAHMESPKEMNVEV 180

Query: 181 SDGRVWKILCGERWPHGVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR 240
           SDGRVWKILCGERWP GVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR
Sbjct: 181 SDGRVWKILCGERWPLGVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR 240

Query: 241 SGCRG 246
           SGCRG
Sbjct: 241 SGCRG 245

[Close]
BLAST of CmoCh20G011710 vs. ExPASy TrEMBL
Match: A0A6J1E0D8 (B3 domain-containing protein At4g01580-like OS=Momordica charantia OX=3673 GN=LOC111024773 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 8.4e-73
Identity = 150/301 (49.83%), Postives = 188/301 (62.46%), Query Frame = 0 

Query: 5   FESATPHFFKVILPQTLNQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLTKNDE 64
           F SATPHFFKVILP  L Q KL +P KFV +HGEAL+ EEV LKVA+GAEWKVG+ K++ 
Sbjct: 13  FTSATPHFFKVILPHILTQRKLNVPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNG 72

Query: 65  KIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK---- 124
           K+WFEKGW++FV+FYS+ +G+FLTFRYE N+CFHV IFD +ASEIEYP+   G ++    
Sbjct: 73  KVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIRSESE 132

Query: 125 ---------KRER----------------------------------------------- 184
                    KR R                                               
Sbjct: 133 EFEDQILVYKRRREGKITQTNLYSVAHHKKMKISNDHDEVLRNEDFQSSKFKDRLKVIKC 192

Query: 185 ----FSISEEATKFQSLTTNPSFMVTMGASYLHTGKSYLSIPQWFANAHMESPKEMSVEV 241
                S++E A+ FQS+T N SFM+TMG SY+HTGK   +IP+ FA  H++  +E+S+E 
Sbjct: 193 ENGLRSVTERASTFQSMTPNHSFMITMGPSYIHTGKGDPNIPKSFAKIHVKKSQEISLED 252

[Close]
BLAST of CmoCh20G011710 vs. ExPASy TrEMBL
Match: A0A1S4E1R2 (B3 domain-containing transcription factor VRN1-like OS=Cucumis melo OX=3656 GN=LOC107991566 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 6.9e-51
Identity = 121/280 (43.21%), Postives = 153/280 (54.64%), Query Frame = 0 

Query: 49  VASGAEWKVGLTKNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASE 108
           + SGA+WKVGL K++EK+WFEKGWEEFVKF+S++ GHFLTFRYEGNSCF VVIFD+TA+E
Sbjct: 1   MVSGAKWKVGLKKSNEKVWFEKGWEEFVKFHSIDYGHFLTFRYEGNSCFQVVIFDQTATE 60

Query: 109 IEYPLG-----------------------------------C------------------ 168
           IEYP+                                    C                  
Sbjct: 61  IEYPISFKNQFDNKKMFEEKRKSVQETLPIKRARKEVHEDECVPQTLYKKMKTSDEVGAN 120

Query: 169 ---------------------------GGKVKKRERFSISEEATKFQSLTTNPSFMVTMG 228
                                       GK+  +   +I  +A+KF+ +TTNPSFMVTMG
Sbjct: 121 KVIWRSHELQEVEMKKNTEDLKSSDLKKGKIWSKRSSTIFAKASKFKEITTNPSFMVTMG 180

Query: 229 ASYLHTGKSYLSIPQWFANAHMESPKEMSVEVS--DGRVWKILCGERW--PHGVKRVEMR 243
            SYLHT  S L+IP  FA+ +++  K++ + VS  D +VWKILC ERW      +R EM 
Sbjct: 181 RSYLHT--SNLNIPTGFASTYLKETKDLILYVSSDDQKVWKILCVERWLYARSCQRFEMA 240

[Close]
BLAST of CmoCh20G011710 vs. ExPASy TrEMBL
Match: A0A6J1I7N8 (B3 domain-containing protein REM8-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470376 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 7.7e-50
Identity = 115/275 (41.82%), Postives = 161/275 (58.55%), Query Frame = 0 

Query: 10  PHFFKVILPQTLNQSKLAIPHKFVRKHG-EALETEEVRLKVASGAEWKVGLTKNDEKIWF 69
           PHFFK++L   L + KL IP KFV ++G +A E    RLKVA G EW+VG+TK+D ++WF
Sbjct: 25  PHFFKIVLAHALKEQKLEIPKKFVGEYGLKAFENNPTRLKVADGEEWEVGVTKSDGRVWF 84

Query: 70  EKGWEEFVKFYSVEIGHFLTFRYE-GNSCFHVVIFDKTASEIEYPLG------------- 129
           + GW++FV+FY+V + +FL F+YE  +SCFHVVIFD TA+EI+YPL              
Sbjct: 85  DYGWQKFVEFYNVGLEYFLVFKYELRSSCFHVVIFDPTATEIKYPLKKKLKMGTNFDDLH 144

Query: 130 -------------------CGGKVKKR------ERFSISEEATKFQSLTTNPSFMVTMGA 189
                                 K K R      ER     +AT FQS+T NPSFM  +  
Sbjct: 145 LISHPHPQVGKASFGAMELMNNKRKLRLMTRTSERAGAMAKATTFQSMTPNPSFMCKIYP 204

Query: 190 SYLHTGKSYLSIPQWFANAHMESPKEMSVEVSDGRVWKI-LCGERWPHGVKRVEMRGGWR 242
           S++ +G +YL++P+ FA  H+E P EM+++  DGR W +       P   +RVE+R GWR
Sbjct: 205 SHIQSG-AYLNVPRRFAERHIEEPTEMTLQDLDGRTWGVTYYSYLTPKMKRRVELRSGWR 264

[Close]
BLAST of CmoCh20G011710 vs. NCBI nr
Match: XP_022928091.1 (B3 domain-containing transcription factor VRN1-like [Cucurbita moschata])

HSP 1 Score: 512.3 bits (1318), Expect = 2.3e-141
Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 0 

Query: 1   MASSFESATPHFFKVILPQTLNQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLT 60
           MASSFESATPHFFKVILPQTLNQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLT
Sbjct: 1   MASSFESATPHFFKVILPQTLNQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLT 60

Query: 61  KNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK 120
           KNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK
Sbjct: 61  KNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK 120

Query: 121 KRERFSISEEATKFQSLTTNPSFMVTMGASYLHTGKSYLSIPQWFANAHMESPKEMSVEV 180
           KRERFSISEEATKFQSLTTNPSFMVTMGASYLHTGKSYLSIPQWFANAHMESPKEMSVEV
Sbjct: 121 KRERFSISEEATKFQSLTTNPSFMVTMGASYLHTGKSYLSIPQWFANAHMESPKEMSVEV 180

Query: 181 SDGRVWKILCGERWPHGVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR 240
           SDGRVWKILCGERWPHGVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR
Sbjct: 181 SDGRVWKILCGERWPHGVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR 240

Query: 241 SGCRG 246
           SGCRG
Sbjct: 241 SGCRG 245

[Close]
BLAST of CmoCh20G011710 vs. NCBI nr
Match: XP_023513190.1 (B3 domain-containing transcription factor VRN1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 507.7 bits (1306), Expect = 5.7e-140
Identity = 243/245 (99.18%), Postives = 243/245 (99.18%), Query Frame = 0 

Query: 1   MASSFESATPHFFKVILPQTLNQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLT 60
           MASSFESATPHFFKVILPQTL QSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLT
Sbjct: 1   MASSFESATPHFFKVILPQTLTQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLT 60

Query: 61  KNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK 120
           KNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK
Sbjct: 61  KNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK 120

Query: 121 KRERFSISEEATKFQSLTTNPSFMVTMGASYLHTGKSYLSIPQWFANAHMESPKEMSVEV 180
           KRERFSISEEATKFQSLT NPSFMVTMGASYLHTGKSYLSIPQWFANAHMESPKEMSVEV
Sbjct: 121 KRERFSISEEATKFQSLTMNPSFMVTMGASYLHTGKSYLSIPQWFANAHMESPKEMSVEV 180

Query: 181 SDGRVWKILCGERWPHGVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR 240
           SDGRVWKILCGERWPHGVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR
Sbjct: 181 SDGRVWKILCGERWPHGVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR 240

Query: 241 SGCRG 246
           SGCRG
Sbjct: 241 SGCRG 245

[Close]
BLAST of CmoCh20G011710 vs. NCBI nr
Match: KAG6571413.1 (B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 506.9 bits (1304), Expect = 9.7e-140
Identity = 243/245 (99.18%), Postives = 244/245 (99.59%), Query Frame = 0 

Query: 1   MASSFESATPHFFKVILPQTLNQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLT 60
           MASSFESATPHFFKVILPQTLNQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLT
Sbjct: 1   MASSFESATPHFFKVILPQTLNQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLT 60

Query: 61  KNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK 120
           KNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK
Sbjct: 61  KNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK 120

Query: 121 KRERFSISEEATKFQSLTTNPSFMVTMGASYLHTGKSYLSIPQWFANAHMESPKEMSVEV 180
           KRERFSISEEATKFQSLTTNPSFMVTMGASYLHTGKSYLSIPQWFANAH+ESPKEMSVEV
Sbjct: 121 KRERFSISEEATKFQSLTTNPSFMVTMGASYLHTGKSYLSIPQWFANAHIESPKEMSVEV 180

Query: 181 SDGRVWKILCGERWPHGVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR 240
           SDGRVWKILCGERWPHGVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR
Sbjct: 181 SDGRVWKILCGERWPHGVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR 240

Query: 241 SGCRG 246
           SG RG
Sbjct: 241 SGSRG 245

[Close]
BLAST of CmoCh20G011710 vs. NCBI nr
Match: XP_022971710.1 (B3 domain-containing transcription factor VRN1-like [Cucurbita maxima])

HSP 1 Score: 497.3 bits (1279), Expect = 7.7e-137
Identity = 239/245 (97.55%), Postives = 241/245 (98.37%), Query Frame = 0 

Query: 1   MASSFESATPHFFKVILPQTLNQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLT 60
           MASSFESATPHFFKVILPQTL QSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLT
Sbjct: 1   MASSFESATPHFFKVILPQTLIQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLT 60

Query: 61  KNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK 120
           KNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK
Sbjct: 61  KNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK 120

Query: 121 KRERFSISEEATKFQSLTTNPSFMVTMGASYLHTGKSYLSIPQWFANAHMESPKEMSVEV 180
           KRERFSI+EEATKFQSLT NPSFMVTMGASYLHTGKSYLSIP WFANAHMESPKEM+VEV
Sbjct: 121 KRERFSITEEATKFQSLTMNPSFMVTMGASYLHTGKSYLSIPLWFANAHMESPKEMNVEV 180

Query: 181 SDGRVWKILCGERWPHGVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR 240
           SDGRVWKILCGERWP GVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR
Sbjct: 181 SDGRVWKILCGERWPLGVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR 240

Query: 241 SGCRG 246
           SGCRG
Sbjct: 241 SGCRG 245

[Close]
BLAST of CmoCh20G011710 vs. NCBI nr
Match: KAG7011178.1 (B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 491.9 bits (1265), Expect = 3.2e-135
Identity = 243/273 (89.01%), Postives = 244/273 (89.38%), Query Frame = 0 

Query: 1   MASSFESATPHFFKVILPQTLNQSKL----------------------------AIPHKF 60
           MASSFESATPHFFKVILPQTLNQSKL                            AIPHKF
Sbjct: 1   MASSFESATPHFFKVILPQTLNQSKLVSSSSLPPLFLFIIRIIKWGFKNLCFFQAIPHKF 60

Query: 61  VRKHGEALETEEVRLKVASGAEWKVGLTKNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYE 120
           VRKHGEALETEEVRLKVASGAEWKVGLTKNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYE
Sbjct: 61  VRKHGEALETEEVRLKVASGAEWKVGLTKNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYE 120

Query: 121 GNSCFHVVIFDKTASEIEYPLGCGGKVKKRERFSISEEATKFQSLTTNPSFMVTMGASYL 180
           GNSCFHVVIFDKTASEIEYPLGCGGKVKKRERFSISEEATKFQSLTTNPSFMVTMGASYL
Sbjct: 121 GNSCFHVVIFDKTASEIEYPLGCGGKVKKRERFSISEEATKFQSLTTNPSFMVTMGASYL 180

Query: 181 HTGKSYLSIPQWFANAHMESPKEMSVEVSDGRVWKILCGERWPHGVKRVEMRGGWRDFAR 240
           HTGKSYLSIPQWFANAH+ESPKEMSVEVSDGRVWKILCGERWPHGVKRVEMRGGWRDFAR
Sbjct: 181 HTGKSYLSIPQWFANAHIESPKEMSVEVSDGRVWKILCGERWPHGVKRVEMRGGWRDFAR 240

Query: 241 DNGLKKGDICVFELMETSELSFKATIFRSGCRG 246
           DNGLKKGDICVFELMETSELSFKATIFRSG RG
Sbjct: 241 DNGLKKGDICVFELMETSELSFKATIFRSGSRG 273

[Close]
BLAST of CmoCh20G011710 vs. TAIR 10
Match: AT3G18990.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 116.3 bits (290), Expect = 3.4e-26
Identity = 95/341 (27.86%), Postives = 134/341 (39.30%), Query Frame = 0 

Query: 10  PHFFKVILPQTLNQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLTKNDEKIWFE 69
           P F K+I   T+ + +L +P KFV K  + L    V L V  G  W+VGL K D KIWF+
Sbjct: 4   PFFHKLIFSSTIQEKRLRVPDKFVSKFKDELSV-AVALTVPDGHVWRVGLRKADNKIWFQ 63

Query: 70  KGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEY------------------ 129
            GW+EFV  YS+ IG+ L FRYEGNS F V IF+ + SEI Y                  
Sbjct: 64  DGWQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINYHSTGLMDSAHNHFKRARL 123

Query: 130 ---------------------------PLGCG---------------------------- 189
                                      P   G                            
Sbjct: 124 FEDLEDEDAEVIFPSSVYPSPLPESTVPANKGYASSAIQTLFTGPVKAEEPTPTPKIPKK 183

Query: 190 -GKVKK-------------------RERFSISEEATKFQSLT----------------TN 241
            G+ KK                   R +F  S  A K +++T                TN
Sbjct: 184 RGRKKKNADPEEINSSAPRDDDPENRSKFYESASARK-RTVTAEERERAINAAKTFEPTN 243

[Close]
BLAST of CmoCh20G011710 vs. TAIR 10
Match: AT3G18960.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 95.9 bits (237), Expect = 4.8e-20
Identity = 46/108 (42.59%), Postives = 68/108 (62.96%), Query Frame = 0 

Query: 6   ESATPHFFKVILPQTLNQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLTKNDEK 65
           ES    FFK++LP T+    + IP +FV+  G  L +E V L+  +G +  + L +  E+
Sbjct: 24  ESPVKKFFKLVLPSTMKDKMMKIPPRFVKLQGSKL-SEVVTLETPAGFKRSIKLKRIGEE 83

Query: 66  IWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPL 114
           IWF +GW EF + +S+E GHFL F Y+ NS F V+IF+ +A E +YPL
Sbjct: 84  IWFHEGWSEFAEAHSIEEGHFLLFEYKENSSFRVIIFNVSACETKYPL 130

[Close]
BLAST of CmoCh20G011710 vs. TAIR 10
Match: AT1G49475.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 95.5 bits (236), Expect = 6.3e-20
Identity = 48/108 (44.44%), Postives = 68/108 (62.96%), Query Frame = 0 

Query: 6   ESATPHFFKVILPQTLNQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLTKNDEK 65
           E     F K+IL   + +  + +P +FVR  G  L T+ V L+   G +  + + +  ++
Sbjct: 28  EPTVKKFIKIILLSRIIEKMMKVPARFVR-FGPKL-TDNVTLQTPVGFKRSIRIKRIGDE 87

Query: 66  IWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPL 114
           +WFEKGW EF + +S+  GHFL F YEG+SCF VVIFD +ASEIEYPL
Sbjct: 88  VWFEKGWSEFAEAHSLSDGHFLFFHYEGDSCFRVVIFDVSASEIEYPL 133

[Close]
BLAST of CmoCh20G011710 vs. TAIR 10
Match: AT4G01580.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-19
Identity = 46/108 (42.59%), Postives = 66/108 (61.11%), Query Frame = 0 

Query: 6   ESATPHFFKVILPQTLNQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLTKNDEK 65
           ES    FFK++LP T+    + IP +FV+  G  L +E V L   +G +  + L +  E+
Sbjct: 24  ESPVKKFFKLVLPSTMKDKMMRIPPRFVKLQGSKL-SEVVTLVTPAGYKRSIKLKRIGEE 83

Query: 66  IWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPL 114
           IWF +GW EF + +S+E GHFL F Y+ NS F V+IF+ +A E  YPL
Sbjct: 84  IWFHEGWSEFAEAHSIEEGHFLLFEYKKNSSFRVIIFNASACETNYPL 130

[Close]
BLAST of CmoCh20G011710 vs. TAIR 10
Match: AT4G31690.1 (Transcriptional factor B3 family protein )

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-15
Identity = 65/240 (27.08%), Postives = 108/240 (45.00%), Query Frame = 0 

Query: 2   ASSFESATPHFFKVILPQTLNQSKLAIPHKFVRKHGEAL-ETEEVRLKV-ASGAEWKVGL 61
           AS       HFF+ +LP    QS L IP  +  +H E   E + V L+  AS   W+V +
Sbjct: 4   ASPLSPTNQHFFQPLLPGF--QSNLKIPVNYFSEHIEGKHEGKTVTLRTDASERTWEVKM 63

Query: 62  TKNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGC---G 121
               E     +GW+EFV+ + + IG F+ FR+EG+  FHV     +  EI+YP       
Sbjct: 64  ----EGHRLTEGWKEFVEAHDLRIGDFVVFRHEGDMVFHVTALGPSCCEIQYPQSSRHEE 123

Query: 122 GKVKKRERFSISEEATKFQSLTTNPSF---MVTMGASYLHTGKSYLSIPQWFA--NAHME 181
           G+       S  E     Q  +   S      +   ++ +  +  +S+P+ F   +   +
Sbjct: 124 GEESGENEISEKEGEENVQKESDKSSSDLNCFSQSVTHSNISRDAVSVPRDFVKRSGFSK 183

Query: 182 SPKEMSVEVSDGRVWKILCGERWPHGVKRVEMRGGWRDFARDNGLKKGDICVFELMETSE 232
              E+ +   +G+ W+    E   +    V + GGW  F  +N L  GD C F+L++ ++
Sbjct: 184 GRHEIVLMNEEGKSWE---SEVKSYMSGAVYLVGGWTTFCTENKLDVGDSCTFKLLQKAK 234

The following BLAST results are available for this feature:
BLAST of CmoCh20G011710 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8L3W14.8e-2527.86B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana OX=3702 G... [more]
Q84R276.8e-1942.59B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana OX=3702 GN=At3g18... [more]
Q9XIB48.8e-1944.44B3 domain-containing protein At1g49475 OS=Arabidopsis thaliana OX=3702 GN=At1g49... [more]
Q9ZSH71.5e-1842.59B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana OX=3702 GN=At4g01... [more]
O817781.7e-1427.08B3 domain-containing protein REM9 OS=Arabidopsis thaliana OX=3702 GN=REM9 PE=2 S... [more]
BLAST of CmoCh20G011710 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EJA71.1e-141100.00B3 domain-containing transcription factor VRN1-like OS=Cucurbita moschata OX=366... [more]
A0A6J1I6H93.7e-13797.55B3 domain-containing transcription factor VRN1-like OS=Cucurbita maxima OX=3661 ... [more]
A0A6J1E0D88.4e-7349.83B3 domain-containing protein At4g01580-like OS=Momordica charantia OX=3673 GN=LO... [more]
A0A1S4E1R26.9e-5143.21B3 domain-containing transcription factor VRN1-like OS=Cucumis melo OX=3656 GN=L... [more]
A0A6J1I7N87.7e-5041.82B3 domain-containing protein REM8-like isoform X1 OS=Cucurbita maxima OX=3661 GN... [more]
BLAST of CmoCh20G011710 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022928091.12.3e-141100.00B3 domain-containing transcription factor VRN1-like [Cucurbita moschata][more]
XP_023513190.15.7e-14099.18B3 domain-containing transcription factor VRN1-like [Cucurbita pepo subsp. pepo][more]
KAG6571413.19.7e-14099.18B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma ... [more]
XP_022971710.17.7e-13797.55B3 domain-containing transcription factor VRN1-like [Cucurbita maxima][more]
KAG7011178.13.2e-13589.01B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma ... [more]
BLAST of CmoCh20G011710 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G18990.13.4e-2627.86AP2/B3-like transcriptional factor family protein [more]
AT3G18960.14.8e-2042.59AP2/B3-like transcriptional factor family protein [more]
AT1G49475.16.3e-2044.44AP2/B3-like transcriptional factor family protein [more]
AT4G01580.11.1e-1942.59AP2/B3-like transcriptional factor family protein [more]
AT4G31690.11.2e-1527.08Transcriptional factor B3 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003340B3 DNA binding domainSMARTSM01019B3_2coord: 143..242
e-value: 6.3E-10
score: 49.0
coord: 12..105
e-value: 5.2E-22
score: 89.1
IPR003340B3 DNA binding domainPFAMPF02362B3coord: 12..104
e-value: 6.1E-19
score: 67.8
coord: 156..241
e-value: 2.3E-16
score: 59.5
IPR003340B3 DNA binding domainPROSITEPS50863B3coord: 11..105
score: 14.01472
IPR003340B3 DNA binding domainPROSITEPS50863B3coord: 144..242
score: 13.196833
IPR003340B3 DNA binding domainCDDcd10017B3_DNAcoord: 141..240
e-value: 1.70836E-18
score: 75.8273
IPR003340B3 DNA binding domainCDDcd10017B3_DNAcoord: 10..103
e-value: 1.47821E-22
score: 86.6128
IPR015300DNA-binding pseudobarrel domain superfamilyGENE3D2.40.330.10coord: 3..106
e-value: 2.9E-29
score: 102.9
IPR015300DNA-binding pseudobarrel domain superfamilyGENE3D2.40.330.10coord: 119..242
e-value: 3.7E-27
score: 96.5
IPR015300DNA-binding pseudobarrel domain superfamilySUPERFAMILY101936DNA-binding pseudobarrel domaincoord: 139..241
IPR015300DNA-binding pseudobarrel domain superfamilySUPERFAMILY101936DNA-binding pseudobarrel domaincoord: 5..105
NoneNo IPR availablePANTHERPTHR31920:SF26TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATEDcoord: 3..113
coord: 122..240
NoneNo IPR availablePANTHERPTHR31920B3 DOMAIN-CONTAININGcoord: 3..113
coord: 122..240

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G011710.1CmoCh20G011710.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding