Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGAAATGCCTGAAAGGGGTAGCAAACGAAGAGTTATTTATCTCTCCTCGTCGTCGGAGGAGGACGAAGAGGAATCAGACGATGAGGAAGGGGAATGGGAAGAGGAGTTTGATAATGAATGCAGCGACAACGATTGTGATGAACTTCTCTCCCAGCGAGTCATCCGCTTTCTTAAAGGTATTTTTAGACCGCTTCGTCTTTTTCCATTGATAATTCGCCATTGTGTTGAGATTCGAGTTCAAAGTCGAAGTGTCGATTGAGAGAAATGAAATCGATGATTAGATAGGTTGTTGGGAAATTCATAGGGTATTGGATCTCTTAATTATCTGATTTGAAACATGTTCTGTCGCAGAGAATAAAAATTTAGATTCGTTAACACTTCATGATTGCAAAGCTTATTTACGGGAGAATAGGCTAAGAATAGCGGGGACTAAAGCCGTCTGTATTCAAAGAGTCCTGGAACATTGGAGGTACGTGGATCCTTCATCCTTAAACTCAAGATACACATCTTAATATTGCGTTCAATTAGGAAATTTATGAAGTTTCGTCATCTAGTCCGATCGCTGAATATTTGAAATTGTTAGTACTTTTTCATGATGGAAATCTGCTATGTACTCATCTATGGAAGTCTTCTGATATTTAGAGAAGCGACTATTGAGTGTTTCGGTAAATGTGGATTGTTATCAATTATGATTCTATAGACTTTTATGTTGTGAAATTGAGTTTTCCTTGTTCCTCAATGGATTTTGGAGCCTTTAACTTCTAGTTCTGCATTGATACATATCAAACCATAAGGCAGCAAAACATAATTTGGGTTTGGTACTGTTTTCCATTTGTTGCTGATAAATCTTGATTAACTGAACTGTATTCTACGTCTTCCTTTCTGTTGTAATCACTTTGGGTCTCTGCAAAGTTGCAACATTATATAGAAGTTATTGAGCAAAAAGGGAGGAGATTCTGAAAGAATAATATGCCAGTTATTCAATTCTTCACGAGTTAAATATACAATAGGTATTTGGCACAACTTGTGAGATCCCACATCGGTTGGAGCGGGGAATGAAACATTTTTTATAAGGGTGTGGAAACCTCTCCCTAGTAAATGCGTTTTAAAACCGTGAAGCTGACGTCAATATATGACGGGCCAAAATAGACAATATCTGCTAGTGGTGGTTGTTACAAATGGTATCAAAGCTAGGCACCGAGCAGTGTGCTAGTGAGGACGCTGGGCCCCCAAGGGGGGTGGATTGTGAGATCCTACATTGTTCGGAGAGGGGAACGAAGCATTCCTTATAAGGGTGTGAAACGTCTCCCTAGTAGACGCGTTTCAAACCATGAAACTAACAGCGATATGTAACGGGCCAAAGCGGACAATATCTGTTAGTGGTGACTATTACACAACTACTCCTAACAAAACTACTCCTAACAAAACTTCTTTGCTCTCTCTTCTTTTTCTCCCAACTCAGGATGAAGGATGGAAATGGTGAAGCGCACTATCCAAGGTCATCCTTTGTTGTCAATTGTACTGGTAATTTCTATATACATTAGTCATAGTATTTTCTTTGATCACTCTTTTAGTGGCTGTAATTATTCTATTAAAACATCAATGCAGGTGATGTTTGTAGGGGAGATACTGTTTTGTTCACTCAGAAAGTTTATGCAAAGTACTCAAACAAGTTTCTCTTCCACCACTAGTCTTGTGTTAGATATTTTAGATTTGCACTCCTAATTCTTGTAGCTTAATTTTTAACAGGTTTGATAAAGTAACTAGGCGTGGAGGGCTTATAGGGAAGAGAACTGTGGCAGGGAGGGTAGTGAAGGAAAGCTATGGTGCAAGTAAACAGCAGCATACTTTTACTGTAAGGCGGTTTTTTCTGTTCTAGCAATCATTTTCTCATATCGTAATTCAAATTGGTTGTGCATTATTAGTATCATACTTTGTAATATGCTCAATATGTTTACATCTAATATTCATTTGCGATTCATAAATATTTTTTCATTTTCGATTCATATTTCCAACGCTTGTGACTATAACGTGCTAGGTTGAAGTTCTATGGAGCAGGGGAGTTCGGAAGTTACCCCCACTTTATCCTCTACTTGTTAAGGGTCGAAATCTCTATAAACTAAGAACATTCAGACGGGTAAGTTCTCTACGTACATAAATATATTTTATTTTCATACAAAGCATTTGGGTTGTGGGGATTTGAACTGTGGATGAAAATTTTAAATCAAATTGATTTTTTTAGTTGAACCATTGCTGGTGGAAGTGTACGTATGTAGATGGGAATTTAGTAACAGAACAATGCTCATTGTGCTTAAATTCTCAAGCATGAACCAAGTGAGTGAGTTTGGCTCCAAGATATCCATCCTTTCCAAATTTGTATAAAAGAGCTAAAGTTCTACGAAATATGACTTCTAAAGTGTGTATCGTCACCTGCACATATTATGATATGTGCTCCAGGCGACTGATGGATGTCATTCTTCTTGTTGAGCTTGTTTGATTGAATTTTGTACATTAGGTGATTGATAGGGATATCTCTCTAATAAAAAATGTATGAATGAATAGAGTATGGTTTCCTATGTCATAGGTGATCGATAGGAATATCTCCTTAGCAAAGCATGTATGAGCGAACCAAACTAAGATTAGGGTGGTGGAGCTAGAGCAGATTATATGTTGACATAGGTCAGTACGTTCTCAGTAGACCTAGCACAGCGGTGTTCATGAGTGGCGTTTGGCTCCAAGATATTCGTCCTTTCCAAATTTGTATAAAAGAGCTGAAGTTTGTATGTCAGATCTTGTTTCTGATCATAAATGCAAGCCAACGACCAATATTGCTGAGTTTTCTTCATTATTTGTATGTTTTACTCAGCTTTGGAATGATGAAGCTGAAAGAGTTCAGGTTCTAGCAGAGAAGCACAAAAGAGGTGCGGCTGCTCGGGGTGTACGAGCATTGCAGAAAAGGAAAAGAAAACTTGTACAAATGGGAGGTATAATTCACAACCACTACTCCCCGAAACATGAATAGGAGCTTGCTTGCCGCAATTGAATAAAAGATTGAATGTTACCATATTTTTGTATTGTAATGTCCAGGAAGTGGAAAGAATCAAGGACATGTTCAACTTCCAAGACAAGCCTCGAACAGTAACGGGAGTCGCAAGAGTATGCGTTCAAGGGACAAGAACAATGCTGTTCGTAGGCACCCAGCGTAGGAAGACAGAATGGACATCGAAAAATATAGTGGTCTGCTCTTGAGCTCACAAATGGCCTTTGAACTTGCGTTACAAATTGCTCTTTTAAGTTTGAAAAGGAATCAGTGAATAACTATTCAAATAATGTAACCAAAATTGACTTCAAAGTAGCAGGAAAAGTCAAAACAGGCATTTAGGTTCATTTGTAAATGTAATTAGCCTTTACTTTCACGATATCTTGTGATAAAATAAGGTTTTAAATGAATTTAACTAGATATCTCATATATTAAATTCATATTATGTTTT
mRNA sequence
AGGAAATGCCTGAAAGGGGTAGCAAACGAAGAGTTATTTATCTCTCCTCGTCGTCGGAGGAGGACGAAGAGGAATCAGACGATGAGGAAGGGGAATGGGAAGAGGAGTTTGATAATGAATGCAGCGACAACGATTGTGATGAACTTCTCTCCCAGCGAGTCATCCGCTTTCTTAAAGAGAATAAAAATTTAGATTCGTTAACACTTCATGATTGCAAAGCTTATTTACGGGAGAATAGGCTAAGAATAGCGGGGACTAAAGCCGTCTGTATTCAAAGAGTCCTGGAACATTGGAGGATGAAGGATGGAAATGGTGAAGCGCACTATCCAAGGTCATCCTTTGTTGTCAATTGTACTGGTGATGTTTGTAGGGGAGATACTGTTTTGTTCACTCAGAAAGTTTATGCAAAGTTTGATAAAGTAACTAGGCGTGGAGGGCTTATAGGGAAGAGAACTGTGGCAGGGAGGGTAGTGAAGGAAAGCTATGGTGCAAGTAAACAGCAGCATACTTTTACTGTTGAAGTTCTATGGAGCAGGGGAGTTCGGAAGTTACCCCCACTTTATCCTCTACTTGTTAAGGGTCGAAATCTCTATAAACTAAGAACATTCAGACGGCTTTGGAATGATGAAGCTGAAAGAGTTCAGGTTCTAGCAGAGAAGCACAAAAGAGGTGCGGCTGCTCGGGGTGTACGAGCATTGCAGAAAAGGAAAAGAAAACTTGTACAAATGGGAGGAAGTGGAAAGAATCAAGGACATGTTCAACTTCCAAGACAAGCCTCGAACAGTAACGGGAGTCGCAAGAGTATGCGTTCAAGGGACAAGAACAATGCTGTTCGTAGGCACCCAGCGTAGGAAGACAGAATGGACATCGAAAAATATAGTGGTCTGCTCTTGAGCTCACAAATGGCCTTTGAACTTGCGTTACAAATTGCTCTTTTAAGTTTGAAAAGGAATCAGTGAATAACTATTCAAATAATGTAACCAAAATTGACTTCAAAGTAGCAGGAAAAGTCAAAACAGGCATTTAGGTTCATTTGTAAATGTAATTAGCCTTTACTTTCACGATATCTTGTGATAAAATAAGGTTTTAAATGAATTTAACTAGATATCTCATATATTAAATTCATATTATGTTTT
Coding sequence (CDS)
ATGCCTGAAAGGGGTAGCAAACGAAGAGTTATTTATCTCTCCTCGTCGTCGGAGGAGGACGAAGAGGAATCAGACGATGAGGAAGGGGAATGGGAAGAGGAGTTTGATAATGAATGCAGCGACAACGATTGTGATGAACTTCTCTCCCAGCGAGTCATCCGCTTTCTTAAAGAGAATAAAAATTTAGATTCGTTAACACTTCATGATTGCAAAGCTTATTTACGGGAGAATAGGCTAAGAATAGCGGGGACTAAAGCCGTCTGTATTCAAAGAGTCCTGGAACATTGGAGGATGAAGGATGGAAATGGTGAAGCGCACTATCCAAGGTCATCCTTTGTTGTCAATTGTACTGGTGATGTTTGTAGGGGAGATACTGTTTTGTTCACTCAGAAAGTTTATGCAAAGTTTGATAAAGTAACTAGGCGTGGAGGGCTTATAGGGAAGAGAACTGTGGCAGGGAGGGTAGTGAAGGAAAGCTATGGTGCAAGTAAACAGCAGCATACTTTTACTGTTGAAGTTCTATGGAGCAGGGGAGTTCGGAAGTTACCCCCACTTTATCCTCTACTTGTTAAGGGTCGAAATCTCTATAAACTAAGAACATTCAGACGGCTTTGGAATGATGAAGCTGAAAGAGTTCAGGTTCTAGCAGAGAAGCACAAAAGAGGTGCGGCTGCTCGGGGTGTACGAGCATTGCAGAAAAGGAAAAGAAAACTTGTACAAATGGGAGGAAGTGGAAAGAATCAAGGACATGTTCAACTTCCAAGACAAGCCTCGAACAGTAACGGGAGTCGCAAGAGTATGCGTTCAAGGGACAAGAACAATGCTGTTCGTAGGCACCCAGCGTAG
Protein sequence
MPERGSKRRVIYLSSSSEEDEEESDDEEGEWEEEFDNECSDNDCDELLSQRVIRFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRVLEHWRMKDGNGEAHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQMGGSGKNQGHVQLPRQASNSNGSRKSMRSRDKNNAVRRHPA
Homology
BLAST of CmoCh20G011650 vs. ExPASy Swiss-Prot
Match:
Q338N2 (Zinc finger CCCH domain-containing protein 62 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0391300 PE=4 SV=2)
HSP 1 Score: 168.3 bits (425), Expect = 1.2e-40
Identity = 114/318 (35.85%), Postives = 162/318 (50.94%), Query Frame = 0
Query: 3 ERGSKRRVIYLSSSSEEDEEESDDEEGEWEEEFDNECS---------------------- 62
E GS+ V +DEEE + E +W EE D E +
Sbjct: 25 EEGSEEEV------ESDDEEEEEGEGYDWSEEDDPEAASLAGICDPDAGSYDDPTFDPAA 84
Query: 63 --DNDCDELLSQRVIRF------------------------------LKENKNLDSLTLH 122
D + D +L R+ R L + L+ L ++
Sbjct: 85 DGDLEVDAVLRSRMARMSLSSARKDRKGSRMPKMGKEEMDLLAMVDKLMHDGQLEKLKVY 144
Query: 123 DCKAYLRENRLRIAGTKAVCIQRVLEHWRMKDGNGEAHYPRSSFVVNCTGDVCRGDTVLF 182
+CKAYLR ++LR++G K V + R+ +K GE YP SSFV+NC GD C+GD V+F
Sbjct: 145 ECKAYLRMHKLRLSGNKEVLLTRIRGQIEVKT-MGEVKYPVSSFVLNCQGDSCKGDVVVF 204
Query: 183 TQKVYAKFDKVTR--RGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLY 242
Q +Y + R +G L G+RT AGR++KESYG KQQHTFT+E+LWSRG + PPL+
Sbjct: 205 EQNIYKRKKGAPRGVKGHLCGQRTNAGRIIKESYGTKKQQHTFTIEILWSRGYKPWPPLH 264
Query: 243 PLLVKGRNLYKLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQMGGSGK 265
PLL+KGRNLYK +T R+ W DE ER + L EKH RG AR R ++ + ++ +M +
Sbjct: 265 PLLIKGRNLYKDKTMRQPWLDEEERNRALQEKHARGYVARKTREVRIKDKENERMRRLNR 324
BLAST of CmoCh20G011650 vs. ExPASy TrEMBL
Match:
A0A6J1EQD5 (zinc finger CCCH domain-containing protein 62-like OS=Cucurbita moschata OX=3662 GN=LOC111434886 PE=4 SV=1)
HSP 1 Score: 549.3 bits (1414), Expect = 9.5e-153
Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 0
Query: 1 MPERGSKRRVIYLSSSSEEDEEESDDEEGEWEEEFDNECSDNDCDELLSQRVIRFLKENK 60
MPERGSKRRVIYLSSSSEEDEEESDDEEGEWEEEFDNECSDNDCDELLSQRVIRFLKENK
Sbjct: 1 MPERGSKRRVIYLSSSSEEDEEESDDEEGEWEEEFDNECSDNDCDELLSQRVIRFLKENK 60
Query: 61 NLDSLTLHDCKAYLRENRLRIAGTKAVCIQRVLEHWRMKDGNGEAHYPRSSFVVNCTGDV 120
NLDSLTLHDCKAYLRENRLRIAGTKAVCIQRVLEHWRMKDGNGEAHYPRSSFVVNCTGDV
Sbjct: 61 NLDSLTLHDCKAYLRENRLRIAGTKAVCIQRVLEHWRMKDGNGEAHYPRSSFVVNCTGDV 120
Query: 121 CRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVR 180
CRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVR
Sbjct: 121 CRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVR 180
Query: 181 KLPPLYPLLVKGRNLYKLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQ 240
KLPPLYPLLVKGRNLYKLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQ
Sbjct: 181 KLPPLYPLLVKGRNLYKLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQ 240
Query: 241 MGGSGKNQGHVQLPRQASNSNGSRKSMRSRDKNNAVRRHPA 282
MGGSGKNQGHVQLPRQASNSNGSRKSMRSRDKNNAVRRHPA
Sbjct: 241 MGGSGKNQGHVQLPRQASNSNGSRKSMRSRDKNNAVRRHPA 281
BLAST of CmoCh20G011650 vs. ExPASy TrEMBL
Match:
A0A6J1I2K8 (zinc finger CCCH domain-containing protein 62 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470342 PE=4 SV=1)
HSP 1 Score: 514.2 bits (1323), Expect = 3.4e-142
Identity = 265/288 (92.01%), Postives = 274/288 (95.14%), Query Frame = 0
Query: 1 MPERGSKRRVIYLSSSSEEDEEES-------DDEEGEWEEEFDNECSDNDCDELLSQRVI 60
MPERGSKRRV+YL SSSE+DEEES DD+EGE E+EFDNECSDNDCDE+LSQRVI
Sbjct: 1 MPERGSKRRVVYLYSSSEDDEEESDEEYDDEDDDEGESEKEFDNECSDNDCDEVLSQRVI 60
Query: 61 RFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRVLEHWRMKDGNGEAHYPRSSFV 120
RFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQR+ EHWRMKDGNGE HYPRSSFV
Sbjct: 61 RFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRLQEHWRMKDGNGEVHYPRSSFV 120
Query: 121 VNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEV 180
VNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEV
Sbjct: 121 VNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEV 180
Query: 181 LWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQK 240
LWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAER+QVLAEKHKRGAAARGVRALQK
Sbjct: 181 LWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERIQVLAEKHKRGAAARGVRALQK 240
Query: 241 RKRKLVQMGGSGKNQGHVQLPRQASNSNGSRKSMRSRDKNNAVRRHPA 282
RKRKL+Q+GGSGKNQG QLPRQA NSNGSRKSMRSRDKNNAVRRHPA
Sbjct: 241 RKRKLLQIGGSGKNQGRAQLPRQALNSNGSRKSMRSRDKNNAVRRHPA 288
BLAST of CmoCh20G011650 vs. ExPASy TrEMBL
Match:
A0A1S4E1S9 (zinc finger CCCH domain-containing protein 62-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497448 PE=4 SV=1)
HSP 1 Score: 424.1 bits (1089), Expect = 4.6e-115
Identity = 230/306 (75.16%), Postives = 248/306 (81.05%), Query Frame = 0
Query: 1 MPERGSKRRVIYLSSSSEEDEEES-----------------------------DDEEGEW 60
M +RGSKR VI +SSSS++DEEES DD+EGE
Sbjct: 30 MSKRGSKRTVICISSSSDDDEEESVEYDDEDDGVGDSEEEFHDEDDGDVNSEEDDDEGES 89
Query: 61 EEEFDNECSDNDCDE-LLSQRVIRFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQ 120
EEFD+E SDN CDE +LS+RVIRFLKENKNLDSLTL+DCKAYLRENRLRIAGTKAVCIQ
Sbjct: 90 GEEFDDEESDNGCDEGVLSKRVIRFLKENKNLDSLTLNDCKAYLRENRLRIAGTKAVCIQ 149
Query: 121 RVLEHWRMKDGNGEAHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRT 180
RV EHWR+KDGNGE YPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTR GGLIGKRT
Sbjct: 150 RVKEHWRLKDGNGEVQYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRHGGLIGKRT 209
Query: 181 VAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAE 240
VAGRVVKESYGASKQQHTFTVEVLW RGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAE
Sbjct: 210 VAGRVVKESYGASKQQHTFTVEVLWIRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAE 269
Query: 241 RVQVLAEKHKRGAAARGVRALQKRKRKLVQMGGSGKNQGHVQLPRQASNSNGSRKSMRSR 277
RVQVLAEKH+RGAAAR +RA+QK+KRK++Q G KNQGHV L RQ S R+ M SR
Sbjct: 270 RVQVLAEKHRRGAAARDLRAMQKKKRKIIQTKGCAKNQGHVHLARQPLKSKEKRQRMPSR 329
BLAST of CmoCh20G011650 vs. ExPASy TrEMBL
Match:
A0A5A7TS31 (Zinc finger CCCH domain-containing protein 62-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G002520 PE=4 SV=1)
HSP 1 Score: 423.3 bits (1087), Expect = 7.8e-115
Identity = 231/307 (75.24%), Postives = 248/307 (80.78%), Query Frame = 0
Query: 1 MPERGSKRRVIYLSSSSEEDEEES-----------------------------DDEEGEW 60
M +RGSKR VI +SSSS++DEEES DD+EGE
Sbjct: 1 MSKRGSKRTVICISSSSDDDEEESVEYDDEDDGVGDSEEEFHDEDDGDVNSEEDDDEGES 60
Query: 61 EEEFDNECSDNDCDE-LLSQRVIRFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQ 120
EEFD+E SDN CDE +LS+RVIRFLKENKNLDSLTL+DCKAYLRENRLRIAGTKAVCIQ
Sbjct: 61 GEEFDDEESDNGCDEGVLSKRVIRFLKENKNLDSLTLNDCKAYLRENRLRIAGTKAVCIQ 120
Query: 121 RVLEHWRMKDGNGEAHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRT 180
RV EHWR+KDGNGE YPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTR GGLIGKRT
Sbjct: 121 RVKEHWRLKDGNGEVQYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRHGGLIGKRT 180
Query: 181 VAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAE 240
VAGRVVKESYGASKQQHTFTVEVLW RGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAE
Sbjct: 181 VAGRVVKESYGASKQQHTFTVEVLWIRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAE 240
Query: 241 RVQVLAEKHKRGAAARGVRALQKRKRKLVQMGGSGKNQGHVQLPRQASNSNGSRKSMRSR 278
RVQVLAEKH+RGAAAR +RA+QK+KRK++Q G KNQGHV L RQ S R+ M SR
Sbjct: 241 RVQVLAEKHRRGAAARDLRAMQKKKRKIIQTKGCAKNQGHVHLARQPLKSKEKRQRMPSR 300
BLAST of CmoCh20G011650 vs. ExPASy TrEMBL
Match:
A0A1S4E1T3 (zinc finger CCCH domain-containing protein 62-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103497448 PE=4 SV=1)
HSP 1 Score: 423.3 bits (1087), Expect = 7.8e-115
Identity = 231/307 (75.24%), Postives = 248/307 (80.78%), Query Frame = 0
Query: 1 MPERGSKRRVIYLSSSSEEDEEES-----------------------------DDEEGEW 60
M +RGSKR VI +SSSS++DEEES DD+EGE
Sbjct: 30 MSKRGSKRTVICISSSSDDDEEESVEYDDEDDGVGDSEEEFHDEDDGDVNSEEDDDEGES 89
Query: 61 EEEFDNECSDNDCDE-LLSQRVIRFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQ 120
EEFD+E SDN CDE +LS+RVIRFLKENKNLDSLTL+DCKAYLRENRLRIAGTKAVCIQ
Sbjct: 90 GEEFDDEESDNGCDEGVLSKRVIRFLKENKNLDSLTLNDCKAYLRENRLRIAGTKAVCIQ 149
Query: 121 RVLEHWRMKDGNGEAHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRT 180
RV EHWR+KDGNGE YPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTR GGLIGKRT
Sbjct: 150 RVKEHWRLKDGNGEVQYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRHGGLIGKRT 209
Query: 181 VAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAE 240
VAGRVVKESYGASKQQHTFTVEVLW RGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAE
Sbjct: 210 VAGRVVKESYGASKQQHTFTVEVLWIRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAE 269
Query: 241 RVQVLAEKHKRGAAARGVRALQKRKRKLVQMGGSGKNQGHVQLPRQASNSNGSRKSMRSR 278
RVQVLAEKH+RGAAAR +RA+QK+KRK++Q G KNQGHV L RQ S R+ M SR
Sbjct: 270 RVQVLAEKHRRGAAARDLRAMQKKKRKIIQTKGCAKNQGHVHLARQPLKSKEKRQRMPSR 329
BLAST of CmoCh20G011650 vs. NCBI nr
Match:
XP_022927980.1 (zinc finger CCCH domain-containing protein 62-like [Cucurbita moschata])
HSP 1 Score: 549.3 bits (1414), Expect = 2.0e-152
Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 0
Query: 1 MPERGSKRRVIYLSSSSEEDEEESDDEEGEWEEEFDNECSDNDCDELLSQRVIRFLKENK 60
MPERGSKRRVIYLSSSSEEDEEESDDEEGEWEEEFDNECSDNDCDELLSQRVIRFLKENK
Sbjct: 1 MPERGSKRRVIYLSSSSEEDEEESDDEEGEWEEEFDNECSDNDCDELLSQRVIRFLKENK 60
Query: 61 NLDSLTLHDCKAYLRENRLRIAGTKAVCIQRVLEHWRMKDGNGEAHYPRSSFVVNCTGDV 120
NLDSLTLHDCKAYLRENRLRIAGTKAVCIQRVLEHWRMKDGNGEAHYPRSSFVVNCTGDV
Sbjct: 61 NLDSLTLHDCKAYLRENRLRIAGTKAVCIQRVLEHWRMKDGNGEAHYPRSSFVVNCTGDV 120
Query: 121 CRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVR 180
CRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVR
Sbjct: 121 CRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVR 180
Query: 181 KLPPLYPLLVKGRNLYKLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQ 240
KLPPLYPLLVKGRNLYKLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQ
Sbjct: 181 KLPPLYPLLVKGRNLYKLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQ 240
Query: 241 MGGSGKNQGHVQLPRQASNSNGSRKSMRSRDKNNAVRRHPA 282
MGGSGKNQGHVQLPRQASNSNGSRKSMRSRDKNNAVRRHPA
Sbjct: 241 MGGSGKNQGHVQLPRQASNSNGSRKSMRSRDKNNAVRRHPA 281
BLAST of CmoCh20G011650 vs. NCBI nr
Match:
KAG6571408.1 (Zinc finger CCCH domain-containing protein 62, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 540.0 bits (1390), Expect = 1.2e-149
Identity = 278/281 (98.93%), Postives = 280/281 (99.64%), Query Frame = 0
Query: 1 MPERGSKRRVIYLSSSSEEDEEESDDEEGEWEEEFDNECSDNDCDELLSQRVIRFLKENK 60
MPERGSKRRVIYLSSSSEEDEEESDDEEGE EEEFDNECSDNDCDELLSQRVIRFLKENK
Sbjct: 1 MPERGSKRRVIYLSSSSEEDEEESDDEEGESEEEFDNECSDNDCDELLSQRVIRFLKENK 60
Query: 61 NLDSLTLHDCKAYLRENRLRIAGTKAVCIQRVLEHWRMKDGNGEAHYPRSSFVVNCTGDV 120
NLDSLTL+DCKAYLRENRLRIAGTKAVCIQRVLEHWRMKDGNGEAHYPRSSFVVNCTGDV
Sbjct: 61 NLDSLTLNDCKAYLRENRLRIAGTKAVCIQRVLEHWRMKDGNGEAHYPRSSFVVNCTGDV 120
Query: 121 CRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVR 180
CRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVR
Sbjct: 121 CRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVR 180
Query: 181 KLPPLYPLLVKGRNLYKLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQ 240
KLPPLYPLLVKGRNLYKLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRK+VQ
Sbjct: 181 KLPPLYPLLVKGRNLYKLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKVVQ 240
Query: 241 MGGSGKNQGHVQLPRQASNSNGSRKSMRSRDKNNAVRRHPA 282
MGGSGKNQGHVQLPRQASNSNGSRKSMRSRDKNNAVRRHPA
Sbjct: 241 MGGSGKNQGHVQLPRQASNSNGSRKSMRSRDKNNAVRRHPA 281
BLAST of CmoCh20G011650 vs. NCBI nr
Match:
XP_023512636.1 (zinc finger CCCH domain-containing protein 62 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 516.5 bits (1329), Expect = 1.4e-142
Identity = 269/289 (93.08%), Postives = 275/289 (95.16%), Query Frame = 0
Query: 1 MPERGSKRRVIYLSSSSEEDEEE--------SDDEEGEWEEEFDNECSDNDCDELLSQRV 60
MPERGSKRRVIYLSSSSEED+EE DD+EGE EEEFDN CSDNDCDE+LSQRV
Sbjct: 1 MPERGSKRRVIYLSSSSEEDDEEESDEEYDDEDDDEGESEEEFDNGCSDNDCDEVLSQRV 60
Query: 61 IRFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRVLEHWRMKDGNGEAHYPRSSF 120
IRFLKENKNLDSLTL+DCKAYLRENRLRIAGTKAVCIQR+ EHWRMKDGNGEAHYPRSSF
Sbjct: 61 IRFLKENKNLDSLTLNDCKAYLRENRLRIAGTKAVCIQRLQEHWRMKDGNGEAHYPRSSF 120
Query: 121 VVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVE 180
VVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVE
Sbjct: 121 VVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVE 180
Query: 181 VLWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQ 240
VLWS GVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQ
Sbjct: 181 VLWSTGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQ 240
Query: 241 KRKRKLVQMGGSGKNQGHVQLPRQASNSNGSRKSMRSRDKNNAVRRHPA 282
KRKRKLVQ+GGSGKNQGHVQLPRQA NSNGSRKSMRSRDKNNAVRRHPA
Sbjct: 241 KRKRKLVQIGGSGKNQGHVQLPRQALNSNGSRKSMRSRDKNNAVRRHPA 289
BLAST of CmoCh20G011650 vs. NCBI nr
Match:
XP_022971662.1 (zinc finger CCCH domain-containing protein 62 isoform X1 [Cucurbita maxima])
HSP 1 Score: 514.2 bits (1323), Expect = 7.0e-142
Identity = 265/288 (92.01%), Postives = 274/288 (95.14%), Query Frame = 0
Query: 1 MPERGSKRRVIYLSSSSEEDEEES-------DDEEGEWEEEFDNECSDNDCDELLSQRVI 60
MPERGSKRRV+YL SSSE+DEEES DD+EGE E+EFDNECSDNDCDE+LSQRVI
Sbjct: 1 MPERGSKRRVVYLYSSSEDDEEESDEEYDDEDDDEGESEKEFDNECSDNDCDEVLSQRVI 60
Query: 61 RFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRVLEHWRMKDGNGEAHYPRSSFV 120
RFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQR+ EHWRMKDGNGE HYPRSSFV
Sbjct: 61 RFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRLQEHWRMKDGNGEVHYPRSSFV 120
Query: 121 VNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEV 180
VNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEV
Sbjct: 121 VNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEV 180
Query: 181 LWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQK 240
LWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAER+QVLAEKHKRGAAARGVRALQK
Sbjct: 181 LWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERIQVLAEKHKRGAAARGVRALQK 240
Query: 241 RKRKLVQMGGSGKNQGHVQLPRQASNSNGSRKSMRSRDKNNAVRRHPA 282
RKRKL+Q+GGSGKNQG QLPRQA NSNGSRKSMRSRDKNNAVRRHPA
Sbjct: 241 RKRKLLQIGGSGKNQGRAQLPRQALNSNGSRKSMRSRDKNNAVRRHPA 288
BLAST of CmoCh20G011650 vs. NCBI nr
Match:
XP_038902878.1 (zinc finger CCCH domain-containing protein 62-like [Benincasa hispida])
HSP 1 Score: 436.4 bits (1121), Expect = 1.8e-118
Identity = 228/259 (88.03%), Postives = 236/259 (91.12%), Query Frame = 0
Query: 17 SEEDEEESDDEEGEWEEEFDNECSDNDCDELLSQRVIRFLKENKNLDSLTLHDCKAYLRE 76
SEE+ + DD EGE EEEFDNE SDNDCDE+LS+RVIRFLKENKNLDSLTL+DCKAYLRE
Sbjct: 56 SEEEFDYKDDVEGESEEEFDNEDSDNDCDEVLSERVIRFLKENKNLDSLTLNDCKAYLRE 115
Query: 77 NRLRIAGTKAVCIQRVLEHWRMKDGNGEAHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKF 136
NRLRIAGTKAVCIQRV EHWRMKDGNGEAHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKF
Sbjct: 116 NRLRIAGTKAVCIQRVEEHWRMKDGNGEAHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKF 175
Query: 137 DKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLY 196
DKVTR GGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLY
Sbjct: 176 DKVTRHGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLY 235
Query: 197 KLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQMGGSGKNQGHVQLPRQ 256
KLRTFRRLWNDEAERVQVLAEKHKRGAAARG+RA+QK+KRK Q G KNQGHV L RQ
Sbjct: 236 KLRTFRRLWNDEAERVQVLAEKHKRGAAARGLRAMQKKKRKFPQTRGCAKNQGHVHLARQ 295
Query: 257 ASNSNGSRKSMRSRDKNNA 276
NS SRK M SRD NNA
Sbjct: 296 GLNSKESRKRMPSRDYNNA 314
BLAST of CmoCh20G011650 vs. TAIR 10
Match:
AT5G66840.1 (SAP domain-containing protein )
HSP 1 Score: 251.5 bits (641), Expect = 7.8e-67
Identity = 139/281 (49.47%), Postives = 188/281 (66.90%), Query Frame = 0
Query: 12 YLSSSSEEDEE-ESDDEEGEWEEEFDNEC-SDNDCDEL----------LSQRVIRFLKEN 71
Y + EEDE+ S +++ +W + D+ SD + DE+ +V R L
Sbjct: 28 YDETEEEEDEDTNSSEDDSDWSHDDDDATESDVEADEIGVKGDNDDGDEDDKVTRLLTAG 87
Query: 72 KNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRVLEHWRMKDGNGEAHYPRSSFVVNCTGD 131
+L S+ + +CKAYLR++ LR++GTK VCI R+LEHWR+KDG GEA YP+SSF +NC GD
Sbjct: 88 SDLKSVNVKECKAYLRKHGLRLSGTKPVCIDRILEHWRIKDGTGEAVYPKSSFAINCKGD 147
Query: 132 VCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGV 191
VC+GD VLFTQKV+ K++K+ + G ++G+RTVAG+VVKESYG +KQQHTFT+EVLW G
Sbjct: 148 VCKGDIVLFTQKVHHKYEKMKKSGNIMGRRTVAGQVVKESYGTAKQQHTFTIEVLWCEGT 207
Query: 192 RKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLV 251
+KLPPLYPLLVKGRNLY+L T R+ W +E +RV+VL EKH RGAAAR V +K K V
Sbjct: 208 QKLPPLYPLLVKGRNLYRLMTLRQRWPNEEDRVKVLNEKHNRGAAARKVMRERKIKSGYV 267
Query: 252 QMGGSGKNQGHVQLPRQA-SNSNGSRKSMRSRDKNNAVRRH 280
G + GHV+ P Q + N +++ R + N H
Sbjct: 268 LKDGRLQKPGHVKKPCQVKTRKNEKDENLTQRLRQNTPANH 308
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q338N2 | 1.2e-40 | 35.85 | Zinc finger CCCH domain-containing protein 62 OS=Oryza sativa subsp. japonica OX... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1EQD5 | 9.5e-153 | 100.00 | zinc finger CCCH domain-containing protein 62-like OS=Cucurbita moschata OX=3662... | [more] |
A0A6J1I2K8 | 3.4e-142 | 92.01 | zinc finger CCCH domain-containing protein 62 isoform X1 OS=Cucurbita maxima OX=... | [more] |
A0A1S4E1S9 | 4.6e-115 | 75.16 | zinc finger CCCH domain-containing protein 62-like isoform X1 OS=Cucumis melo OX... | [more] |
A0A5A7TS31 | 7.8e-115 | 75.24 | Zinc finger CCCH domain-containing protein 62-like isoform X1 OS=Cucumis melo va... | [more] |
A0A1S4E1T3 | 7.8e-115 | 75.24 | zinc finger CCCH domain-containing protein 62-like isoform X3 OS=Cucumis melo OX... | [more] |
Match Name | E-value | Identity | Description | |
XP_022927980.1 | 2.0e-152 | 100.00 | zinc finger CCCH domain-containing protein 62-like [Cucurbita moschata] | [more] |
KAG6571408.1 | 1.2e-149 | 98.93 | Zinc finger CCCH domain-containing protein 62, partial [Cucurbita argyrosperma s... | [more] |
XP_023512636.1 | 1.4e-142 | 93.08 | zinc finger CCCH domain-containing protein 62 [Cucurbita pepo subsp. pepo] | [more] |
XP_022971662.1 | 7.0e-142 | 92.01 | zinc finger CCCH domain-containing protein 62 isoform X1 [Cucurbita maxima] | [more] |
XP_038902878.1 | 1.8e-118 | 88.03 | zinc finger CCCH domain-containing protein 62-like [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |
AT5G66840.1 | 7.8e-67 | 49.47 | SAP domain-containing protein | [more] |