CmoCh20G011290 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh20G011290
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr20: 10922634 .. 10923277 (+)
RNA-Seq ExpressionCmoCh20G011290
SyntenyCmoCh20G011290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTTGTGTTCTCTGGGATAAGCATGCCGTTGCTGAGGTGGACATCCGACGAAGAGAGGCGGGCCCACGAGAGTAGTGGACCTGGTGGGTGTAGCCGCAGTGTCTCCTTCACCACCGCCTGTAAGTACGGCAGATTCGCCACGTCAGCGTCTGAGAGGCTCCTTCCGCCTATAGCGGTGGCGATTTCCCTCGCGACTTCTCCCTGTATCTCCGGATGTAAAATTAACTCCGCCACCACCCACTCCGTCAGCAGCGCCGTCGTGTCCGTACCCCGGAAAATCATTTCCTTCACCAAAAAAAAAAAAAAAACCCTCAATCCAAAATTGAATTTTTTAATAAAAAATTAATTAAATTTACGTACCCATAAGACAGCCACCATGTCATCCTCGTTGAGCTTTTCATCGCCGTCGAGAGACAGCAAAACGTCGACGAAATCGGAATCATCCGACGGAGCTTCACCGCGGCGGTGCTCATCAATTACGCCGCGGACAAATTCATTAACTTTAGGGACGAGTCGGGCGCAGCGGTGGCGGATACGACCCGGGTCGTAGAATCCACTAAGCCAGGGGAGATAATCCGACCAATTAAACGCACCGAGCAGCTCGAACCCTTCACGAACCAACTCGCGAACCGTTTCTAA

mRNA sequence

ATGGCGGTTGTGTTCTCTGGGATAAGCATGCCGTTGCTGAGGTGGACATCCGACGAAGAGAGGCGGGCCCACGAGAGTAGTGGACCTGGTGGGTGTAGCCGCAGTGTCTCCTTCACCACCGCCTGTAAGTACGGCAGATTCGCCACGTCAGCGTCTGAGAGGCTCCTTCCGCCTATAGCGGTGGCGATTTCCCTCGCGACTTCTCCCTGTATCTCCGGATGTAAAATTAACTCCGCCACCACCCACTCCGTCAGCAGCGCCGTCGTCCACCATGTCATCCTCGTTGAGCTTTTCATCGCCGTCGAGAGACAGCAAAACGTCGACGAAATCGGAATCATCCGACGGAGCTTCACCGCGGCGGTGCTCATCAATTACGCCGCGGACAAATTCATTAACTTTAGGGACGAGTCGGGCGCAGCGGTGGCGGATACGACCCGGGTCGTAGAATCCACTAAGCCAGGGGAGATAATCCGACCAATTAAACGCACCGAGCAGCTCGAACCCTTCACGAACCAACTCGCGAACCGTTTCTAA

Coding sequence (CDS)

ATGGCGGTTGTGTTCTCTGGGATAAGCATGCCGTTGCTGAGGTGGACATCCGACGAAGAGAGGCGGGCCCACGAGAGTAGTGGACCTGGTGGGTGTAGCCGCAGTGTCTCCTTCACCACCGCCTGTAAGTACGGCAGATTCGCCACGTCAGCGTCTGAGAGGCTCCTTCCGCCTATAGCGGTGGCGATTTCCCTCGCGACTTCTCCCTGTATCTCCGGATGTAAAATTAACTCCGCCACCACCCACTCCGTCAGCAGCGCCGTCGTCCACCATGTCATCCTCGTTGAGCTTTTCATCGCCGTCGAGAGACAGCAAAACGTCGACGAAATCGGAATCATCCGACGGAGCTTCACCGCGGCGGTGCTCATCAATTACGCCGCGGACAAATTCATTAACTTTAGGGACGAGTCGGGCGCAGCGGTGGCGGATACGACCCGGGTCGTAGAATCCACTAAGCCAGGGGAGATAATCCGACCAATTAAACGCACCGAGCAGCTCGAACCCTTCACGAACCAACTCGCGAACCGTTTCTAA

Protein sequence

MAVVFSGISMPLLRWTSDEERRAHESSGPGGCSRSVSFTTACKYGRFATSASERLLPPIAVAISLATSPCISGCKINSATTHSVSSAVVHHVILVELFIAVERQQNVDEIGIIRRSFTAAVLINYAADKFINFRDESGAAVADTTRVVESTKPGEIIRPIKRTEQLEPFTNQLANRF
Homology
BLAST of CmoCh20G011290 vs. ExPASy TrEMBL
Match: A0A0E0EXJ1 (Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 6.6e-11
Identity = 57/176 (32.39%), Postives = 85/176 (48.30%), Query Frame = 0

Query: 1   MAVVFSGISMPLLRWTSDEERRAHESSGPGGCSRSVSFTTACKYGRFATSASERLLPPIA 60
           +AVV +G +MPL   TS    RA  SSGPGGC+ SVSFTTAC+                 
Sbjct: 71  IAVVPAGTTMPLASPTSAVASRAQLSSGPGGCALSVSFTTACR----------------- 130

Query: 61  VAISLATSPCISGCKINSATTHSVSSAVVHHVILVELFIAVERQQNVDEIGIIRRS---- 120
                               T ++SS+V+         + +E +++VDE+GI+       
Sbjct: 131 --------------------TATMSSSVL---------VGLEGEEDVDEVGIVGGGSGGG 190

Query: 121 -FTAAVLINYAADKFINFRDESGAAVADTTRVVESTKPGEIIRPIKRTEQLEPFTN 172
               AV+ +  AD+ ++  DE GAA  D   VVE  +P E++ P++R E+LEP  +
Sbjct: 191 VAAEAVVADDTADERLDAGDERGAAAGDVVGVVEVGEPWEVVGPVERAEELEPLAH 200

BLAST of CmoCh20G011290 vs. ExPASy TrEMBL
Match: A0A0P0XUW8 (Os10g0403200 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0403200 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.4e-06
Identity = 32/85 (37.65%), Postives = 53/85 (62.35%), Query Frame = 0

Query: 91  HVILVELFIAVERQQNVDEIGIIRRS----FTAAVLINYAADKFINFRDESGAAVADTTR 150
           HV+L E+ + +E +++VDE+GI+          AV+ + AAD+ ++  DE GAA  D   
Sbjct: 186 HVVLGEVLVGLEGEEDVDEVGIVGGGGGGVAAEAVVADDAADERLDAGDERGAAAGDVVG 245

Query: 151 VVESTKPGEIIRPIKRTEQLEPFTN 172
           VVE  +P E++ P++R E+LEP  +
Sbjct: 246 VVEVGEPWEVVGPVERAEELEPLAH 270

BLAST of CmoCh20G011290 vs. ExPASy TrEMBL
Match: A0A0P0W003 (Os03g0603200 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0603200 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-05
Identity = 37/81 (45.68%), Postives = 41/81 (50.62%), Query Frame = 0

Query: 9  SMPLLRWTSDEERRAHESSGPGGCSRSVSFTTACKYGRFATSASERLLPPIAVAISLATS 68
          S P  RW S   RRAH+SSGPGGC R  S TT C+YG  A S         A +IS    
Sbjct: 22 SAPRSRWASRVARRAHDSSGPGGCIRRHSLTTQCRYGSAAASPL-----TAAASISACAL 81

Query: 69 PCISGCKINSATTHSVSSAVV 90
             SGC    A+THS   A V
Sbjct: 82 DWTSGCSAIRASTHSSRMATV 97

BLAST of CmoCh20G011290 vs. NCBI nr
Match: CAB3457671.1 (unnamed protein product [Digitaria exilis])

HSP 1 Score: 85.1 bits (209), Expect = 6.6e-13
Identity = 67/203 (33.00%), Postives = 102/203 (50.25%), Query Frame = 0

Query: 1   MAVVFSGISMPLLRWTSDEERRAHESSGPGGCSRSVSFTTACKYGRFATSASERLLP-PI 60
           MAVV +G+  P   WTSD  RRAH+SSGPGG S + S  TAC+Y   A + S    P P 
Sbjct: 124 MAVVPAGMRWP-STWTSDVARRAHDSSGPGGWSLTTSLITACRYTSDAEADSVTARPAPT 183

Query: 61  AVAISLATSPCISGCKINSATTHSVSSAVV----------------------HHVILVEL 120
             + S  T  C SGC    A+THS+++A V                       HV + E 
Sbjct: 184 TRSSSSWTRACTSGCSTRRASTHSITTATVSVPRNTISCKRSRVVRNGKQDGDHVGVGEP 243

Query: 121 FIAVERQQNVDEI--------GIIRRSFTAAVLINYAADKFINFRDESGAAVADTTRVVE 173
            +A E +++V E+          +      AVL++  AD+ I+  DE+ AA     + VE
Sbjct: 244 VVAFEGEEDVGEVADGGWSGGAEVAVPAGGAVLVDDGADEAIDAGDEAVAACPGALQ-VE 303

BLAST of CmoCh20G011290 vs. NCBI nr
Match: KAF7840019.1 (hypothetical protein G2W53_008501 [Senna tora])

HSP 1 Score: 75.1 bits (183), Expect = 6.8e-10
Identity = 36/86 (41.86%), Postives = 59/86 (68.60%), Query Frame = 0

Query: 90  HHVILVELFIAVERQQNVDEIGIIRR--SFTAAVLINYAADKFINFRDESGAAVADTTRV 149
           +H++ ++L   +ER+QN+DEI +IR    F  +V +N   ++F + RDE  AA+  T RV
Sbjct: 134 NHIVFLKLIFTIERKQNIDEIVVIREVSGFGGSVFLNDGCNEFPHARDEFRAALVYTMRV 193

Query: 150 VESTKPGEIIRPIKRTEQLEPFTNQL 174
           +  T+PG+II P+KRT++LE F+N +
Sbjct: 194 INFTEPGDIIGPVKRTQELETFSNHI 219

BLAST of CmoCh20G011290 vs. NCBI nr
Match: BAT10752.1 (Os10g0403200, partial [Oryza sativa Japonica Group])

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-05
Identity = 32/85 (37.65%), Postives = 53/85 (62.35%), Query Frame = 0

Query: 91  HVILVELFIAVERQQNVDEIGIIRRS----FTAAVLINYAADKFINFRDESGAAVADTTR 150
           HV+L E+ + +E +++VDE+GI+          AV+ + AAD+ ++  DE GAA  D   
Sbjct: 186 HVVLGEVLVGLEGEEDVDEVGIVGGGGGGVAAEAVVADDAADERLDAGDERGAAAGDVVG 245

Query: 151 VVESTKPGEIIRPIKRTEQLEPFTN 172
           VVE  +P E++ P++R E+LEP  +
Sbjct: 246 VVEVGEPWEVVGPVERAEELEPLAH 270

BLAST of CmoCh20G011290 vs. NCBI nr
Match: KAB8112670.1 (hypothetical protein EE612_051290, partial [Oryza sativa])

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-05
Identity = 32/86 (37.21%), Postives = 53/86 (61.63%), Query Frame = 0

Query: 91  HVILVELFIAVERQQNVDEIGIIRRS-----FTAAVLINYAADKFINFRDESGAAVADTT 150
           HV+L E+ + +E +++VDE+GI+           AV+ + AAD+ ++  DE GAA  D  
Sbjct: 186 HVVLGEVLVGLEGEEDVDEVGIVGGGGGGGVAAEAVVADDAADERLDAGDERGAAAGDVV 245

Query: 151 RVVESTKPGEIIRPIKRTEQLEPFTN 172
            VVE  +P E++ P++R E+LEP  +
Sbjct: 246 GVVEVGEPWEVVGPVERAEELEPLAH 271

BLAST of CmoCh20G011290 vs. NCBI nr
Match: KAB8092580.1 (hypothetical protein EE612_018804, partial [Oryza sativa] >BAS85207.1 Os03g0603200, partial [Oryza sativa Japonica Group])

HSP 1 Score: 59.3 bits (142), Expect = 3.9e-05
Identity = 37/81 (45.68%), Postives = 41/81 (50.62%), Query Frame = 0

Query: 9  SMPLLRWTSDEERRAHESSGPGGCSRSVSFTTACKYGRFATSASERLLPPIAVAISLATS 68
          S P  RW S   RRAH+SSGPGGC R  S TT C+YG  A S         A +IS    
Sbjct: 22 SAPRSRWASRVARRAHDSSGPGGCIRRHSLTTQCRYGSAAASPL-----TAAASISACAL 81

Query: 69 PCISGCKINSATTHSVSSAVV 90
             SGC    A+THS   A V
Sbjct: 82 DWTSGCSAIRASTHSSRMATV 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0E0EXJ16.6e-1132.39Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1[more]
A0A0P0XUW86.4e-0637.65Os10g0403200 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os10... [more]
A0A0P0W0031.9e-0545.68Os03g0603200 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os03... [more]
Match NameE-valueIdentityDescription
CAB3457671.16.6e-1333.00unnamed protein product [Digitaria exilis][more]
KAF7840019.16.8e-1041.86hypothetical protein G2W53_008501 [Senna tora][more]
BAT10752.11.3e-0537.65Os10g0403200, partial [Oryza sativa Japonica Group][more]
KAB8112670.11.7e-0537.21hypothetical protein EE612_051290, partial [Oryza sativa][more]
KAB8092580.13.9e-0545.68hypothetical protein EE612_018804, partial [Oryza sativa] >BAS85207.1 Os03g06032... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G011290.1CmoCh20G011290.1mRNA