CmoCh20G010230 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh20G010230
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
LocationCmo_Chr20: 7144808 .. 7148537 (+)
RNA-Seq ExpressionCmoCh20G010230
SyntenyCmoCh20G010230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGCTACTTGGGATGATAGTGATGAAAGTGCAAGTGGAAGTGATGAAGAAGTAGCAAATTTTTGCTTCATGGCTCACAGTGACAATGAGGATGAACAAGAAGATGAACAAGAAGATGAGGTAACTCTTGAATCTCTTTCTTATCATGAATTATTTAAACTTATTGATGAGATGACAATTGATTTAGAAAAACTTAGTTCAAAGTATGTTGTGCTTAAAAAGAAATATAAGACTTCCATTATTGAAAATAAGTCTTTACTAAATGAAATTTCTTGCTTAAAAGAGAAGGATCATAATATCGTTAAAATTGATGTACCTTGTGAAAAGCATGTATTTGATTGTGATGAGAAAAATGCATTAATTGATAAAGTCAAGTCTCTCGAGCATGATTGTGGTGAAAAAGATAAATTAATTAAATTGCTCAAAGAGAATGAATCAAATAATTTGCAAGAACTTGGTAGGGCTAAGGAATCTATTAAAATGTTAACAATAGGTGCTCAAAAATTAGATAAAATACTTGAACGAGGTAAGTCATATGGTGATAAAAGAGGATTGGGCTATATTGATGAATGTTCTATACCTTCAAGTTCTAAAACAATATTTGTTAAAGCATCCCCTATCTTGTCTAAATCTAACACGTAAATTTGTATATAAATCTAGATTTGTGCCTATATGTCATTATTGTGGTGTTGAAGGTCATATTAGACCTAAGTGCTTTAAATTGAAAAATTCTCAAAATATTCATATAGGAAGAAAAGTTTCTCAAAATACAAAGTTTAACAATGTTTTAGAAAATAATTTTTCGAATAAAAATAGAATACACAAATTTAGTCCAAGAAATAAATTCTTGCATAATGTCGTTTGTTTCTCGTGTGGTAAGTTTGGACATAAAGATTATTCTTGTTACTTATCTAAATACAATGTCTTTAATAGGAATGCAAATATGAAATGGATTCCTAAATTTGTGAATACTAACTTTCTAGGACCCAAACAAGTATGGGTACCAAAAGGTCAATTTTGAATATCTTTGTTTTTAGGTTTGTTTGAAAGCCTCCAAGAAAAATAAGTGGTACTTGGATAGTGGTTGCTCAAGACACATGACGGGTAATCCATCCAAGTTTGTGAATCTTTCCAAGAAGGATGGTGGCTTAGTAACCTTTGGTGATAACAAGAAGGGTAAAATAATTGGTAAGGGTACTATAGGTAATGACTCTTGTACTCTCATTGAAAATGTATTGTTAGTTGATGGTTTAAAGCATGACTTACTTAGCATTAGTCAATTATGTGATAAAGGTTTTAGAGTTGTATTTGATAAGAATAATTGCATAATTGAAAATGCTAGTGATAGAAAAGTTTTGTTTGTAGGAAATAGAGACGATAATGTGTATACTATTAATTTGAATGATTGTCCTACAAATGATAAATGTCTTTTGGTTTTGCTTGATAACTCTTGGCTATGGCATAGAAGACTAGGACATGCTAGTATGAACTTGATTTCAAATATTTCAAAAAATTCATTAGTTAGAGGTCTTCCTCAACTTAAATTTGAAAAAGATAAAATTTGTGACGCTTGTCAAATGGGTAAGCAAACTAAGTCTTCTTTCAAATCTAAAAATATGATTTCTACTACTAGACCTCTTCAACTACTCCATATGGACTTATTTGGCCCTTCTAAAATAGCTAGTTATGGAGGAAATTATTATGCTTTTGTGATAGTGGATGATTTTTCAAGATTTACTTGGGTTTTGATGATAAAACATAAGAATGATGTTTTGAAAAGATTTGCTAGTTTTGTAAAAAGAGTTCAAAATGAAAAAGAGTTTTTAATTACTAAAATTAGGAGTGACCATGGAGGAGAATTTAACAGTGTTGCCTTTGAAAAATTTTGTGAAGATAATGGTTTTTCTCATGACTTCTCCTCTCCAAAGACTCCTCAACAAAACGGTGTGGTTGAAAGGAAAAATCGTACTTTACAAGAATTTGCTAGATCAATGTTAAATGAGTATGATTTACCTAAATATTTTTGGGCGGAAGCCGTTAATACTGCTTGTTATATTTTAAATAGAGTTTTAATTAGACCTTCATTAAATAAAACTCCTTATGAACTTTGGCATAACAAAATTCCAAATGTTGGGTATTTCAAAGTTTTTGGTTGTAAATGTTTTATTTTGAACAACAAAGAGAAGCTTGGAAAGTTTGATTCAAAAACGGATATTGGTATTTTTCTTGACTATTCATCTACTAGTAAAGCTTATAGAATTTTCAATAAGAGAACTTTAGTTATTGAAGAATCTATGCATGTGGTATTTGATGAATCTTGCAATAATATTTCTAATGAGTCTATTTGTAGTGATGATTTAGAAAGAAATTTTGGAGATTTACTCGTTAGTGACAACGACAAAGAAATTGTTACGAGTAAAGAAGAGATGAGCTTAAAGGAAGAAGGTTCTTCATCAATGCCAAAAGAATGGAGGTATGCCTTGTCTCATCCCAAGGACTTGATTCTTGGTGATCTCGAACAAGGTGTGAAAACTCGCTCTTCTATTAGTTTATTTAATAATCTTGCTTTTGTTTCTCAAATTGAACCAAAAAGTATTAAGGATGCCGAAAATGATGAGTTTTGGATTTTAGCCATGCAAGAGGAGCTAAATCAATTTGAGAGGAACAAAGTTTGGGAATTAGTCCCTAGGCCATCTAATACTTCTATTATTGGAACCAAATGGGTTTTTAGAAATAAAATGGATGAAAATGGGAATATCATTAGAAATAAAGCTAGGCTTGTAGCGTTATTGTCGAGAGGAAGGCATAGATTATGAAGAAACTTTTGCACCCGTGGCTAGATTAGAAGCTATTAGAATGTTACTTGCTTTTGCTCCTTACAAAAATTTTGTATTATATCAAATGGATGTGAAAAGTGCATTTTTGAATGGTTATATTATGGAGGAAGTTTACGTAGAACAACCTCCCGGATTTGAAAATGTAGAATTTTCTCATCATGTCTATAAGTTGAAAAAGGCTCTTTATGGTTTAAAACAAGCTCCAAGAGCTTGGTATGATAGACTCAGTAATTTTCTTATTGGGAATGATTTTAAAATGAGCAAACTCGACACTACACTTTTTATTAAGATTAAAGAAAACGATATGCTATTAGTGCAAATATATGTGGATGATATCATATTTGGTTCTACTAATCCTTCTTTATGTGAAGAATTTTCTAAATGTATGCATAGTGAGTTTGAGATGAGTATGATGGGAGAACTCAGTTTCTTTCTTGGACTTCAAATCAAACACCTCAAGAATGGTATCTTCATCAATCAAGAGAAATACACTAAAGATTTGCTCAAAAGATTCAAGTTCAATGGAGGTAAGATTGCAAGAACTCCCATGAGCACATCCACTAAGCTTGACAAGGATGAAAAAGGTAAAAGTGTGGATATTAAAGCTTATCGAGGTATGATTGGATCTTTACTTTACTTGACCGCTAGTAGACCCGATATTATGTTTAGTGTATGTCTTTGTGCTAGATTTCAATCTTGTCCTAAGGAATCTCATTTACATACCGTTAAGAGAATATTTAAATATTTGCTTGGAACTATTGATCTAGGATTGTGGTATCCTAGAAATGTTGAATTTAAATTGATAGGATATTCTGATGCAGATTTTGCCGGAAGCTTACTTGATCGTAAAAGTACTAGTGGAACTTGTCAATTTCTTGGTAGTTCCTTAG

mRNA sequence

ATGAAGGCTACTTGGGATGATAGTGATGAAAGTGCAAGTGGAAGTGATGAAGAAGTAGCAAATTTTTGCTTCATGGCTCACAGTGACAATGAGGATGAACAAGAAGATGAACAAGAAGATGAGGTTTGTTTGAAAGCCTCCAAGAAAAATAAGTGGTACTTGGATAGTGGTTGCTCAAGACACATGACGGGTAATCCATCCAAGTTTGTGAATCTTTCCAAGAAGGATGGTGGCTTAGTAACCTTTGGTGATAACAAGAAGGGTAAAATAATTGGTAAGGGTACTATAGAAAGAAATTTTGGAGATTTACTCGTTAGTGACAACGACAAAGAAATTGTTACGAGTAAAGAAGAGATGAGCTTAAAGGAAGAAGGTTCTTCATCAATGCCAAAAGAATGGAGTGAGTTTGAGATGAGTATGATGGGAGAACTCAGTTTCTTTCTTGGACTTCAAATCAAACACCTCAAGAATGGTATCTTCATCAATCAAGAGAAATACACTAAAGATTTGCTCAAAAGATTCAAGTTCAATGGAGGTAAGATTGCAAGAACTCCCATGAGCACATCCACTAAGCTTGACAAGGATGAAAAAGGTAAAAGTGTGGATATTAAAGCTTATCGAGGTATGATTGGATCTTTACTTTACTTGACCGCTAGTAGACCCGATATTATGTTTAGTATTTTGCCGGAAGCTTACTTGATCGTAAAAGTACTAGTGGAACTTGTCAATTTCTTGGTAGTTCCTTAG

Coding sequence (CDS)

ATGAAGGCTACTTGGGATGATAGTGATGAAAGTGCAAGTGGAAGTGATGAAGAAGTAGCAAATTTTTGCTTCATGGCTCACAGTGACAATGAGGATGAACAAGAAGATGAACAAGAAGATGAGGTTTGTTTGAAAGCCTCCAAGAAAAATAAGTGGTACTTGGATAGTGGTTGCTCAAGACACATGACGGGTAATCCATCCAAGTTTGTGAATCTTTCCAAGAAGGATGGTGGCTTAGTAACCTTTGGTGATAACAAGAAGGGTAAAATAATTGGTAAGGGTACTATAGAAAGAAATTTTGGAGATTTACTCGTTAGTGACAACGACAAAGAAATTGTTACGAGTAAAGAAGAGATGAGCTTAAAGGAAGAAGGTTCTTCATCAATGCCAAAAGAATGGAGTGAGTTTGAGATGAGTATGATGGGAGAACTCAGTTTCTTTCTTGGACTTCAAATCAAACACCTCAAGAATGGTATCTTCATCAATCAAGAGAAATACACTAAAGATTTGCTCAAAAGATTCAAGTTCAATGGAGGTAAGATTGCAAGAACTCCCATGAGCACATCCACTAAGCTTGACAAGGATGAAAAAGGTAAAAGTGTGGATATTAAAGCTTATCGAGGTATGATTGGATCTTTACTTTACTTGACCGCTAGTAGACCCGATATTATGTTTAGTATTTTGCCGGAAGCTTACTTGATCGTAAAAGTACTAGTGGAACTTGTCAATTTCTTGGTAGTTCCTTAG

Protein sequence

MKATWDDSDESASGSDEEVANFCFMAHSDNEDEQEDEQEDEVCLKASKKNKWYLDSGCSRHMTGNPSKFVNLSKKDGGLVTFGDNKKGKIIGKGTIERNFGDLLVSDNDKEIVTSKEEMSLKEEGSSSMPKEWSEFEMSMMGELSFFLGLQIKHLKNGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKDEKGKSVDIKAYRGMIGSLLYLTASRPDIMFSILPEAYLIVKVLVELVNFLVVP
Homology
BLAST of CmoCh20G010230 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.4e-10
Identity = 39/119 (32.77%), Postives = 63/119 (52.94%), Query Frame = 0

Query: 109  DKEIVTSKEEMSLKEEGSSSMPKEWSEFEMSMMGELSFFLGLQIKHLKNGIFINQEKYTK 168
            D  ++T  + + LK     ++      F +    +L +FLG++ K +  G+ ++Q +YT 
Sbjct: 1135 DDILITGNDTVLLKH----TLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTL 1194

Query: 169  DLLKRFKFNGGKIARTPMSTSTKLDKDEKGKSVDIKAYRGMIGSLLYLTASRPDIMFSI 228
            DLL R      K   TPM+TS KL      K  D   YRG++GSL YL  +RPD+ +++
Sbjct: 1195 DLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAV 1249

BLAST of CmoCh20G010230 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.9e-10
Identity = 39/126 (30.95%), Postives = 63/126 (50.00%), Query Frame = 0

Query: 102  DLLVSDNDKEIVTSKEEMSLKEEGSSSMPKEWSEFEMSMMGELSFFLGLQIKHLKNGIFI 161
            D+L++ ND  ++             +++      F +    EL +FLG++ K +  G+ +
Sbjct: 1153 DILITGNDPTLL------------HNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHL 1212

Query: 162  NQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKDEKGKSVDIKAYRGMIGSLLYLTASRP 221
            +Q +Y  DLL R      K   TPM+ S KL      K  D   YRG++GSL YL  +RP
Sbjct: 1213 SQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRP 1266

Query: 222  DIMFSI 228
            DI +++
Sbjct: 1273 DISYAV 1266

BLAST of CmoCh20G010230 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-08
Identity = 35/97 (36.08%), Postives = 55/97 (56.70%), Query Frame = 0

Query: 134 SEFEMSMMGELSFFLGLQIKHLKNGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLD 193
           S F M  +G + +FLG+QIK   +G+F++Q KY + +L     N G +   PMST   L 
Sbjct: 29  STFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILN----NAGMLDCKPMSTPLPLK 88

Query: 194 KDEK---GKSVDIKAYRGMIGSLLYLTASRPDIMFSI 228
            +      K  D   +R ++G+L YLT +RPDI +++
Sbjct: 89  LNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAV 121

BLAST of CmoCh20G010230 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 8.7e-06
Identity = 49/170 (28.82%), Postives = 79/170 (46.47%), Query Frame = 0

Query: 68   KFVNLSKKDGGLVTFGDNKKGKIIGKGTIERNFGDLLVSDNDKEIVTSKEEMSLKEEGSS 127
            KF +  K    L T+ D     +  K   E NF  LL+  +D  IV   + +  K +G  
Sbjct: 973  KFDSFMKSQTYLKTYSD---PCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDL 1032

Query: 128  SMPKEWSEFEMSMMGELSFFLGLQI--KHLKNGIFINQEKYTKDLLKRFKFNGGKIARTP 187
            S       F+M  +G     LG++I  +     ++++QEKY + +L+RF     K   TP
Sbjct: 1033 S-----KSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTP 1092

Query: 188  MSTSTKLDK-------DEKGKSVDIKAYRGMIGSLLY-LTASRPDIMFSI 228
            ++   KL K       +EKG    +  Y   +GSL+Y +  +RPDI  ++
Sbjct: 1093 LAGHLKLSKKMCPTTVEEKGNMAKV-PYSSAVGSLMYAMVCTRPDIAHAV 1133

BLAST of CmoCh20G010230 vs. ExPASy TrEMBL
Match: A0A438DCH9 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_1061 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 8.6e-57
Identity = 138/261 (52.87%), Postives = 163/261 (62.45%), Query Frame = 0

Query: 1   MKATWDDSDESASGSDE-EVANFCFMAHSDNEDEQEDEQEDEVCLKASKKNKWYLDSGCS 60
           M ATW DS+ES+    E EVAN CFMA  D ++              SKK+KW+LDSGCS
Sbjct: 333 MMATWSDSEESSEEEKEKEVANMCFMAIDDLDE-------------GSKKDKWFLDSGCS 392

Query: 61  RHMTGNPSKFVNLSKKDGGLVTFGDNKKGKIIGKGTI--ERNFGDLLVSDNDKEIVT--- 120
           RHMTG+ SKF  L+K+ GG VTFGDN KG+IIG+G I  + + G L + D  ++      
Sbjct: 393 RHMTGDESKFAFLTKRKGGYVTFGDNAKGRIIGQGNIGLDTSMGKLQIEDRRQQEEVGED 452

Query: 121 -SKEEMSL--------KEEGSSSMPKEW-------------------SEFEMSMMGELSF 180
             KEE  L        + E S  +PK+W                   SEFEMSMMGEL+F
Sbjct: 453 LKKEESPLALPPPHQVQGESSQDLPKDWKFVINHPQDQIIEFSKCMHSEFEMSMMGELNF 512

Query: 181 FLGLQIKHLKNGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKDEKGKSVDIKAY 228
           FLGLQIKHLK G FINQ KY +DLLKRF     K  +TPMS+S KLDKDEKGKS+D   Y
Sbjct: 513 FLGLQIKHLKEGTFINQPKYIRDLLKRFNMEEAKTMKTPMSSSIKLDKDEKGKSIDSTMY 572

BLAST of CmoCh20G010230 vs. ExPASy TrEMBL
Match: A0A438GM43 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_2255 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 2.5e-56
Identity = 135/261 (51.72%), Postives = 166/261 (63.60%), Query Frame = 0

Query: 1   MKATWDDSDESASGSDE-EVANFCFMAHSDNEDEQEDEQEDEVCLKASKKNKWYLDSGCS 60
           M ATW +S+ES+   +E EVAN CFMA  D ++              SK++KW+LDSGCS
Sbjct: 193 MMATWSESEESSEEENEKEVANMCFMAIDDLDE-------------GSKEDKWFLDSGCS 252

Query: 61  RHMTGNPSKFVNLSKKDGGLVTFGDNKKGKIIGKGTIERNFGDLLVSDNDKEIVT----S 120
           RHMTG+ SKF  L+K+ GG VTFGDN KG+IIG+G +E + G L + D  ++  +     
Sbjct: 253 RHMTGDESKFAFLTKRKGGYVTFGDNAKGRIIGQG-LETSMGKLQIEDKRQQEESGEDPK 312

Query: 121 KEEMSL--------KEEGSSSMPKEW---------------------SEFEMSMMGELSF 180
           KEE  L        + E S  +PK+W                     SEFEMSMMGEL+F
Sbjct: 313 KEESPLALPPPQQVQGESSQDLPKDWKFVINHPQDQIIGNPSSGCMHSEFEMSMMGELNF 372

Query: 181 FLGLQIKHLKNGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKDEKGKSVDIKAY 228
           FLGLQIK LK GIFINQ KY KDLLKRF     K+ +TPM++S KLD DEKGKS+D   Y
Sbjct: 373 FLGLQIKQLKEGIFINQAKYIKDLLKRFNMEEAKVMKTPMTSSIKLDMDEKGKSIDSTMY 432

BLAST of CmoCh20G010230 vs. ExPASy TrEMBL
Match: A0A438DNB1 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_520 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.2e-55
Identity = 137/261 (52.49%), Postives = 164/261 (62.84%), Query Frame = 0

Query: 1   MKATWDDSDESASGSDE-EVANFCFMAHSDNEDEQEDEQEDEVCLKASKKNKWYLDSGCS 60
           M ATW +S+ES+   +E EVAN CFMA  D ++              SKK+KW+LDSGCS
Sbjct: 266 MMATWSESEESSEEENEKEVANMCFMAIDDLDE-------------GSKKDKWFLDSGCS 325

Query: 61  RHMTGNPSKFVNLSKKDGGLVTFGDNKKGKIIGKGTI--ERNFGDLLVSD--NDKEIV-- 120
           RHMTG+ SKF  L+K+ GG VTFGDN KG+IIG+G I  E + G L + D    +E+V  
Sbjct: 326 RHMTGDESKFAFLTKRKGGYVTFGDNSKGRIIGQGNIGLETSMGKLQIEDRRQQEEVVED 385

Query: 121 TSKEEMSL--------KEEGSSSMPKEW-------------------SEFEMSMMGELSF 180
             KEE  L        + E S  +PK+W                   SEFEMSMMGEL+F
Sbjct: 386 PKKEESPLALPPPQQVQGESSQDLPKDWKFVINHPQDQIIEFSKCMHSEFEMSMMGELNF 445

Query: 181 FLGLQIKHLKNGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKDEKGKSVDIKAY 228
           FLGLQIK LK G FINQ KY +DLLKRF     K  +TPMS+S KLD DEKGK V+   Y
Sbjct: 446 FLGLQIKQLKEGTFINQAKYIRDLLKRFNMEEAKTMKTPMSSSIKLDMDEKGKPVNSTMY 505

BLAST of CmoCh20G010230 vs. ExPASy TrEMBL
Match: A0A438JPC8 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_2045 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 5.8e-53
Identity = 127/238 (53.36%), Postives = 155/238 (65.13%), Query Frame = 0

Query: 1   MKATWDDSDESASGSDE-EVANFCFMAHSDNEDEQEDEQEDEVCLKASKKNKWYLDSGCS 60
           M ATW +S+ES+    E EVAN CFMA  D ++              SK++KW+LDSGCS
Sbjct: 187 MMATWSESEESSEEEKEKEVANMCFMAVDDLDE-------------GSKEDKWFLDSGCS 246

Query: 61  RHMTGNPSKFVNLSKKDGGLVTFGDNKKGKIIGKGTIERNFGDLLVSDNDKEIVTSKEEM 120
           RHMTG+ SKF  L+K+ GG VTFGDN KG+IIG+G +E +   L + D  ++     EE 
Sbjct: 247 RHMTGDKSKFAFLTKRKGGYVTFGDNAKGRIIGQG-LETSMEKLQIEDKRQQ--EESEED 306

Query: 121 SLKEEGSSSMPKE----------WSEFEMSMMGELSFFLGLQIKHLKNGIFINQEKYTKD 180
             KEE   ++P             SEFEMSMMGEL+FFLGLQIK LK G FINQ KY KD
Sbjct: 307 PKKEESPLALPPPQQVQDFSKCMHSEFEMSMMGELNFFLGLQIKQLKKGTFINQAKYIKD 366

Query: 181 LLKRFKFNGGKIARTPMSTSTKLDKDEKGKSVDIKAYRGMIGSLLYLTASRPDIMFSI 228
           LLKRF     K+ +TPMS+S KLD DEK KS+D   YR +IG LLYLTASRPDIM+S+
Sbjct: 367 LLKRFNMEEAKVMKTPMSSSIKLDMDEKSKSIDSTMYRSIIGCLLYLTASRPDIMYSV 408

BLAST of CmoCh20G010230 vs. ExPASy TrEMBL
Match: A0A438KKN1 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_2565 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 2.2e-52
Identity = 135/261 (51.72%), Postives = 159/261 (60.92%), Query Frame = 0

Query: 1   MKATWDDSDESASGSDE-EVANFCFMAHSDNEDEQEDEQEDEVCLKASKKNKWYLDSGCS 60
           M ATW +S+ES    +E EVAN CFMA  D ++              S K+KW+LDSGCS
Sbjct: 1   MMATWSESEESFEEENEKEVANMCFMAIDDLDE-------------GSMKDKWFLDSGCS 60

Query: 61  RHMTGNPSKFVNLSKKDGGLVTFGDNKKGKIIGKGTI--ERNFGDLLVSD--NDKEIV-- 120
           RHMTGN SKFV L+K+ GG VTFGDN K +IIG+G I  E + G L + D    +E+V  
Sbjct: 61  RHMTGNESKFVFLTKRKGGYVTFGDNSKRRIIGQGNIGLETSMGKLQIEDRRQQEEVVED 120

Query: 121 TSKEEMSL--------KEEGSSSMPKEW-------------------SEFEMSMMGELSF 180
           T KEE  L        + E S  +PK+W                   SEFEMSMM EL+ 
Sbjct: 121 TKKEESPLALPPPQQVQGESSQDLPKDWKFLINHPQDQIIEFSKCMHSEFEMSMMRELNI 180

Query: 181 FLGLQIKHLKNGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKDEKGKSVDIKAY 228
           FLGLQIK LK   FINQ KY KDLLKRF     K  +TPMS+S KLD DEKGK V+   Y
Sbjct: 181 FLGLQIKQLKEETFINQAKYIKDLLKRFNMEEAKTMKTPMSSSIKLDMDEKGKPVNSTMY 240

BLAST of CmoCh20G010230 vs. NCBI nr
Match: RVW33148.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 230.3 bits (586), Expect = 1.8e-56
Identity = 138/261 (52.87%), Postives = 163/261 (62.45%), Query Frame = 0

Query: 1   MKATWDDSDESASGSDE-EVANFCFMAHSDNEDEQEDEQEDEVCLKASKKNKWYLDSGCS 60
           M ATW DS+ES+    E EVAN CFMA  D ++              SKK+KW+LDSGCS
Sbjct: 333 MMATWSDSEESSEEEKEKEVANMCFMAIDDLDE-------------GSKKDKWFLDSGCS 392

Query: 61  RHMTGNPSKFVNLSKKDGGLVTFGDNKKGKIIGKGTI--ERNFGDLLVSDNDKEIVT--- 120
           RHMTG+ SKF  L+K+ GG VTFGDN KG+IIG+G I  + + G L + D  ++      
Sbjct: 393 RHMTGDESKFAFLTKRKGGYVTFGDNAKGRIIGQGNIGLDTSMGKLQIEDRRQQEEVGED 452

Query: 121 -SKEEMSL--------KEEGSSSMPKEW-------------------SEFEMSMMGELSF 180
             KEE  L        + E S  +PK+W                   SEFEMSMMGEL+F
Sbjct: 453 LKKEESPLALPPPHQVQGESSQDLPKDWKFVINHPQDQIIEFSKCMHSEFEMSMMGELNF 512

Query: 181 FLGLQIKHLKNGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKDEKGKSVDIKAY 228
           FLGLQIKHLK G FINQ KY +DLLKRF     K  +TPMS+S KLDKDEKGKS+D   Y
Sbjct: 513 FLGLQIKHLKEGTFINQPKYIRDLLKRFNMEEAKTMKTPMSSSIKLDKDEKGKSIDSTMY 572

BLAST of CmoCh20G010230 vs. NCBI nr
Match: RVW73244.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 228.8 bits (582), Expect = 5.2e-56
Identity = 135/261 (51.72%), Postives = 166/261 (63.60%), Query Frame = 0

Query: 1   MKATWDDSDESASGSDE-EVANFCFMAHSDNEDEQEDEQEDEVCLKASKKNKWYLDSGCS 60
           M ATW +S+ES+   +E EVAN CFMA  D ++              SK++KW+LDSGCS
Sbjct: 193 MMATWSESEESSEEENEKEVANMCFMAIDDLDE-------------GSKEDKWFLDSGCS 252

Query: 61  RHMTGNPSKFVNLSKKDGGLVTFGDNKKGKIIGKGTIERNFGDLLVSDNDKEIVT----S 120
           RHMTG+ SKF  L+K+ GG VTFGDN KG+IIG+G +E + G L + D  ++  +     
Sbjct: 253 RHMTGDESKFAFLTKRKGGYVTFGDNAKGRIIGQG-LETSMGKLQIEDKRQQEESGEDPK 312

Query: 121 KEEMSL--------KEEGSSSMPKEW---------------------SEFEMSMMGELSF 180
           KEE  L        + E S  +PK+W                     SEFEMSMMGEL+F
Sbjct: 313 KEESPLALPPPQQVQGESSQDLPKDWKFVINHPQDQIIGNPSSGCMHSEFEMSMMGELNF 372

Query: 181 FLGLQIKHLKNGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKDEKGKSVDIKAY 228
           FLGLQIK LK GIFINQ KY KDLLKRF     K+ +TPM++S KLD DEKGKS+D   Y
Sbjct: 373 FLGLQIKQLKEGIFINQAKYIKDLLKRFNMEEAKVMKTPMTSSIKLDMDEKGKSIDSTMY 432

BLAST of CmoCh20G010230 vs. NCBI nr
Match: RVW36924.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 226.5 bits (576), Expect = 2.6e-55
Identity = 137/261 (52.49%), Postives = 164/261 (62.84%), Query Frame = 0

Query: 1   MKATWDDSDESASGSDE-EVANFCFMAHSDNEDEQEDEQEDEVCLKASKKNKWYLDSGCS 60
           M ATW +S+ES+   +E EVAN CFMA  D ++              SKK+KW+LDSGCS
Sbjct: 266 MMATWSESEESSEEENEKEVANMCFMAIDDLDE-------------GSKKDKWFLDSGCS 325

Query: 61  RHMTGNPSKFVNLSKKDGGLVTFGDNKKGKIIGKGTI--ERNFGDLLVSD--NDKEIV-- 120
           RHMTG+ SKF  L+K+ GG VTFGDN KG+IIG+G I  E + G L + D    +E+V  
Sbjct: 326 RHMTGDESKFAFLTKRKGGYVTFGDNSKGRIIGQGNIGLETSMGKLQIEDRRQQEEVVED 385

Query: 121 TSKEEMSL--------KEEGSSSMPKEW-------------------SEFEMSMMGELSF 180
             KEE  L        + E S  +PK+W                   SEFEMSMMGEL+F
Sbjct: 386 PKKEESPLALPPPQQVQGESSQDLPKDWKFVINHPQDQIIEFSKCMHSEFEMSMMGELNF 445

Query: 181 FLGLQIKHLKNGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKDEKGKSVDIKAY 228
           FLGLQIK LK G FINQ KY +DLLKRF     K  +TPMS+S KLD DEKGK V+   Y
Sbjct: 446 FLGLQIKQLKEGTFINQAKYIRDLLKRFNMEEAKTMKTPMSSSIKLDMDEKGKPVNSTMY 505

BLAST of CmoCh20G010230 vs. NCBI nr
Match: RVX10821.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 217.6 bits (553), Expect = 1.2e-52
Identity = 127/238 (53.36%), Postives = 155/238 (65.13%), Query Frame = 0

Query: 1   MKATWDDSDESASGSDE-EVANFCFMAHSDNEDEQEDEQEDEVCLKASKKNKWYLDSGCS 60
           M ATW +S+ES+    E EVAN CFMA  D ++              SK++KW+LDSGCS
Sbjct: 187 MMATWSESEESSEEEKEKEVANMCFMAVDDLDE-------------GSKEDKWFLDSGCS 246

Query: 61  RHMTGNPSKFVNLSKKDGGLVTFGDNKKGKIIGKGTIERNFGDLLVSDNDKEIVTSKEEM 120
           RHMTG+ SKF  L+K+ GG VTFGDN KG+IIG+G +E +   L + D  ++     EE 
Sbjct: 247 RHMTGDKSKFAFLTKRKGGYVTFGDNAKGRIIGQG-LETSMEKLQIEDKRQQ--EESEED 306

Query: 121 SLKEEGSSSMPKE----------WSEFEMSMMGELSFFLGLQIKHLKNGIFINQEKYTKD 180
             KEE   ++P             SEFEMSMMGEL+FFLGLQIK LK G FINQ KY KD
Sbjct: 307 PKKEESPLALPPPQQVQDFSKCMHSEFEMSMMGELNFFLGLQIKQLKKGTFINQAKYIKD 366

Query: 181 LLKRFKFNGGKIARTPMSTSTKLDKDEKGKSVDIKAYRGMIGSLLYLTASRPDIMFSI 228
           LLKRF     K+ +TPMS+S KLD DEK KS+D   YR +IG LLYLTASRPDIM+S+
Sbjct: 367 LLKRFNMEEAKVMKTPMSSSIKLDMDEKSKSIDSTMYRSIIGCLLYLTASRPDIMYSV 408

BLAST of CmoCh20G010230 vs. NCBI nr
Match: RVX21766.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 215.7 bits (548), Expect = 4.5e-52
Identity = 135/261 (51.72%), Postives = 159/261 (60.92%), Query Frame = 0

Query: 1   MKATWDDSDESASGSDE-EVANFCFMAHSDNEDEQEDEQEDEVCLKASKKNKWYLDSGCS 60
           M ATW +S+ES    +E EVAN CFMA  D ++              S K+KW+LDSGCS
Sbjct: 1   MMATWSESEESFEEENEKEVANMCFMAIDDLDE-------------GSMKDKWFLDSGCS 60

Query: 61  RHMTGNPSKFVNLSKKDGGLVTFGDNKKGKIIGKGTI--ERNFGDLLVSD--NDKEIV-- 120
           RHMTGN SKFV L+K+ GG VTFGDN K +IIG+G I  E + G L + D    +E+V  
Sbjct: 61  RHMTGNESKFVFLTKRKGGYVTFGDNSKRRIIGQGNIGLETSMGKLQIEDRRQQEEVVED 120

Query: 121 TSKEEMSL--------KEEGSSSMPKEW-------------------SEFEMSMMGELSF 180
           T KEE  L        + E S  +PK+W                   SEFEMSMM EL+ 
Sbjct: 121 TKKEESPLALPPPQQVQGESSQDLPKDWKFLINHPQDQIIEFSKCMHSEFEMSMMRELNI 180

Query: 181 FLGLQIKHLKNGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKDEKGKSVDIKAY 228
           FLGLQIK LK   FINQ KY KDLLKRF     K  +TPMS+S KLD DEKGK V+   Y
Sbjct: 181 FLGLQIKQLKEETFINQAKYIKDLLKRFNMEEAKTMKTPMSSSIKLDMDEKGKPVNSTMY 240

BLAST of CmoCh20G010230 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 65.5 bits (158), Expect = 7.0e-11
Identity = 38/92 (41.30%), Postives = 49/92 (53.26%), Query Frame = 0

Query: 136 FEMSMMGELSFFLGLQIKHLKNGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKD 195
           F++  +G L +FLGL+I     GI I Q KY  DLL      G K +  PM  S      
Sbjct: 308 FKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAH 367

Query: 196 EKGKSVDIKAYRGMIGSLLYLTASRPDIMFSI 228
             G  VD KAYR +IG L+YL  +R DI F++
Sbjct: 368 SGGDFVDAKAYRRLIGRLMYLQITRLDISFAV 399

BLAST of CmoCh20G010230 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 62.0 bits (149), Expect = 7.8e-10
Identity = 35/97 (36.08%), Postives = 55/97 (56.70%), Query Frame = 0

Query: 134 SEFEMSMMGELSFFLGLQIKHLKNGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLD 193
           S F M  +G + +FLG+QIK   +G+F++Q KY + +L     N G +   PMST   L 
Sbjct: 29  STFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILN----NAGMLDCKPMSTPLPLK 88

Query: 194 KDEK---GKSVDIKAYRGMIGSLLYLTASRPDIMFSI 228
            +      K  D   +R ++G+L YLT +RPDI +++
Sbjct: 89  LNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAV 121

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9ZT943.4e-1032.77Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Q94HW29.9e-1030.95Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
P925191.1e-0836.08Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ... [more]
P109788.7e-0628.82Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Match NameE-valueIdentityDescription
A0A438DCH98.6e-5752.87Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... [more]
A0A438GM432.5e-5651.72Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... [more]
A0A438DNB11.2e-5552.49Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... [more]
A0A438JPC85.8e-5353.36Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... [more]
A0A438KKN12.2e-5251.72Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... [more]
Match NameE-valueIdentityDescription
RVW33148.11.8e-5652.87Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera][more]
RVW73244.15.2e-5651.72Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera][more]
RVW36924.12.6e-5552.49Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera][more]
RVX10821.11.2e-5253.36Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera][more]
RVX21766.14.5e-5251.72Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
AT4G23160.17.0e-1141.30cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00810.17.8e-1036.08DNA/RNA polymerases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G010230.1CmoCh20G010230.1mRNA