CmoCh20G010230 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGGCTACTTGGGATGATAGTGATGAAAGTGCAAGTGGAAGTGATGAAGAAGTAGCAAATTTTTGCTTCATGGCTCACAGTGACAATGAGGATGAACAAGAAGATGAACAAGAAGATGAGGTAACTCTTGAATCTCTTTCTTATCATGAATTATTTAAACTTATTGATGAGATGACAATTGATTTAGAAAAACTTAGTTCAAAGTATGTTGTGCTTAAAAAGAAATATAAGACTTCCATTATTGAAAATAAGTCTTTACTAAATGAAATTTCTTGCTTAAAAGAGAAGGATCATAATATCGTTAAAATTGATGTACCTTGTGAAAAGCATGTATTTGATTGTGATGAGAAAAATGCATTAATTGATAAAGTCAAGTCTCTCGAGCATGATTGTGGTGAAAAAGATAAATTAATTAAATTGCTCAAAGAGAATGAATCAAATAATTTGCAAGAACTTGGTAGGGCTAAGGAATCTATTAAAATGTTAACAATAGGTGCTCAAAAATTAGATAAAATACTTGAACGAGGTAAGTCATATGGTGATAAAAGAGGATTGGGCTATATTGATGAATGTTCTATACCTTCAAGTTCTAAAACAATATTTGTTAAAGCATCCCCTATCTTGTCTAAATCTAACACGTAAATTTGTATATAAATCTAGATTTGTGCCTATATGTCATTATTGTGGTGTTGAAGGTCATATTAGACCTAAGTGCTTTAAATTGAAAAATTCTCAAAATATTCATATAGGAAGAAAAGTTTCTCAAAATACAAAGTTTAACAATGTTTTAGAAAATAATTTTTCGAATAAAAATAGAATACACAAATTTAGTCCAAGAAATAAATTCTTGCATAATGTCGTTTGTTTCTCGTGTGGTAAGTTTGGACATAAAGATTATTCTTGTTACTTATCTAAATACAATGTCTTTAATAGGAATGCAAATATGAAATGGATTCCTAAATTTGTGAATACTAACTTTCTAGGACCCAAACAAGTATGGGTACCAAAAGGTCAATTTTGAATATCTTTGTTTTTAGGTTTGTTTGAAAGCCTCCAAGAAAAATAAGTGGTACTTGGATAGTGGTTGCTCAAGACACATGACGGGTAATCCATCCAAGTTTGTGAATCTTTCCAAGAAGGATGGTGGCTTAGTAACCTTTGGTGATAACAAGAAGGGTAAAATAATTGGTAAGGGTACTATAGGTAATGACTCTTGTACTCTCATTGAAAATGTATTGTTAGTTGATGGTTTAAAGCATGACTTACTTAGCATTAGTCAATTATGTGATAAAGGTTTTAGAGTTGTATTTGATAAGAATAATTGCATAATTGAAAATGCTAGTGATAGAAAAGTTTTGTTTGTAGGAAATAGAGACGATAATGTGTATACTATTAATTTGAATGATTGTCCTACAAATGATAAATGTCTTTTGGTTTTGCTTGATAACTCTTGGCTATGGCATAGAAGACTAGGACATGCTAGTATGAACTTGATTTCAAATATTTCAAAAAATTCATTAGTTAGAGGTCTTCCTCAACTTAAATTTGAAAAAGATAAAATTTGTGACGCTTGTCAAATGGGTAAGCAAACTAAGTCTTCTTTCAAATCTAAAAATATGATTTCTACTACTAGACCTCTTCAACTACTCCATATGGACTTATTTGGCCCTTCTAAAATAGCTAGTTATGGAGGAAATTATTATGCTTTTGTGATAGTGGATGATTTTTCAAGATTTACTTGGGTTTTGATGATAAAACATAAGAATGATGTTTTGAAAAGATTTGCTAGTTTTGTAAAAAGAGTTCAAAATGAAAAAGAGTTTTTAATTACTAAAATTAGGAGTGACCATGGAGGAGAATTTAACAGTGTTGCCTTTGAAAAATTTTGTGAAGATAATGGTTTTTCTCATGACTTCTCCTCTCCAAAGACTCCTCAACAAAACGGTGTGGTTGAAAGGAAAAATCGTACTTTACAAGAATTTGCTAGATCAATGTTAAATGAGTATGATTTACCTAAATATTTTTGGGCGGAAGCCGTTAATACTGCTTGTTATATTTTAAATAGAGTTTTAATTAGACCTTCATTAAATAAAACTCCTTATGAACTTTGGCATAACAAAATTCCAAATGTTGGGTATTTCAAAGTTTTTGGTTGTAAATGTTTTATTTTGAACAACAAAGAGAAGCTTGGAAAGTTTGATTCAAAAACGGATATTGGTATTTTTCTTGACTATTCATCTACTAGTAAAGCTTATAGAATTTTCAATAAGAGAACTTTAGTTATTGAAGAATCTATGCATGTGGTATTTGATGAATCTTGCAATAATATTTCTAATGAGTCTATTTGTAGTGATGATTTAGAAAGAAATTTTGGAGATTTACTCGTTAGTGACAACGACAAAGAAATTGTTACGAGTAAAGAAGAGATGAGCTTAAAGGAAGAAGGTTCTTCATCAATGCCAAAAGAATGGAGGTATGCCTTGTCTCATCCCAAGGACTTGATTCTTGGTGATCTCGAACAAGGTGTGAAAACTCGCTCTTCTATTAGTTTATTTAATAATCTTGCTTTTGTTTCTCAAATTGAACCAAAAAGTATTAAGGATGCCGAAAATGATGAGTTTTGGATTTTAGCCATGCAAGAGGAGCTAAATCAATTTGAGAGGAACAAAGTTTGGGAATTAGTCCCTAGGCCATCTAATACTTCTATTATTGGAACCAAATGGGTTTTTAGAAATAAAATGGATGAAAATGGGAATATCATTAGAAATAAAGCTAGGCTTGTAGCGTTATTGTCGAGAGGAAGGCATAGATTATGAAGAAACTTTTGCACCCGTGGCTAGATTAGAAGCTATTAGAATGTTACTTGCTTTTGCTCCTTACAAAAATTTTGTATTATATCAAATGGATGTGAAAAGTGCATTTTTGAATGGTTATATTATGGAGGAAGTTTACGTAGAACAACCTCCCGGATTTGAAAATGTAGAATTTTCTCATCATGTCTATAAGTTGAAAAAGGCTCTTTATGGTTTAAAACAAGCTCCAAGAGCTTGGTATGATAGACTCAGTAATTTTCTTATTGGGAATGATTTTAAAATGAGCAAACTCGACACTACACTTTTTATTAAGATTAAAGAAAACGATATGCTATTAGTGCAAATATATGTGGATGATATCATATTTGGTTCTACTAATCCTTCTTTATGTGAAGAATTTTCTAAATGTATGCATAGTGAGTTTGAGATGAGTATGATGGGAGAACTCAGTTTCTTTCTTGGACTTCAAATCAAACACCTCAAGAATGGTATCTTCATCAATCAAGAGAAATACACTAAAGATTTGCTCAAAAGATTCAAGTTCAATGGAGGTAAGATTGCAAGAACTCCCATGAGCACATCCACTAAGCTTGACAAGGATGAAAAAGGTAAAAGTGTGGATATTAAAGCTTATCGAGGTATGATTGGATCTTTACTTTACTTGACCGCTAGTAGACCCGATATTATGTTTAGTGTATGTCTTTGTGCTAGATTTCAATCTTGTCCTAAGGAATCTCATTTACATACCGTTAAGAGAATATTTAAATATTTGCTTGGAACTATTGATCTAGGATTGTGGTATCCTAGAAATGTTGAATTTAAATTGATAGGATATTCTGATGCAGATTTTGCCGGAAGCTTACTTGATCGTAAAAGTACTAGTGGAACTTGTCAATTTCTTGGTAGTTCCTTAG ATGAAGGCTACTTGGGATGATAGTGATGAAAGTGCAAGTGGAAGTGATGAAGAAGTAGCAAATTTTTGCTTCATGGCTCACAGTGACAATGAGGATGAACAAGAAGATGAACAAGAAGATGAGGTTTGTTTGAAAGCCTCCAAGAAAAATAAGTGGTACTTGGATAGTGGTTGCTCAAGACACATGACGGGTAATCCATCCAAGTTTGTGAATCTTTCCAAGAAGGATGGTGGCTTAGTAACCTTTGGTGATAACAAGAAGGGTAAAATAATTGGTAAGGGTACTATAGAAAGAAATTTTGGAGATTTACTCGTTAGTGACAACGACAAAGAAATTGTTACGAGTAAAGAAGAGATGAGCTTAAAGGAAGAAGGTTCTTCATCAATGCCAAAAGAATGGAGTGAGTTTGAGATGAGTATGATGGGAGAACTCAGTTTCTTTCTTGGACTTCAAATCAAACACCTCAAGAATGGTATCTTCATCAATCAAGAGAAATACACTAAAGATTTGCTCAAAAGATTCAAGTTCAATGGAGGTAAGATTGCAAGAACTCCCATGAGCACATCCACTAAGCTTGACAAGGATGAAAAAGGTAAAAGTGTGGATATTAAAGCTTATCGAGGTATGATTGGATCTTTACTTTACTTGACCGCTAGTAGACCCGATATTATGTTTAGTATTTTGCCGGAAGCTTACTTGATCGTAAAAGTACTAGTGGAACTTGTCAATTTCTTGGTAGTTCCTTAG ATGAAGGCTACTTGGGATGATAGTGATGAAAGTGCAAGTGGAAGTGATGAAGAAGTAGCAAATTTTTGCTTCATGGCTCACAGTGACAATGAGGATGAACAAGAAGATGAACAAGAAGATGAGGTTTGTTTGAAAGCCTCCAAGAAAAATAAGTGGTACTTGGATAGTGGTTGCTCAAGACACATGACGGGTAATCCATCCAAGTTTGTGAATCTTTCCAAGAAGGATGGTGGCTTAGTAACCTTTGGTGATAACAAGAAGGGTAAAATAATTGGTAAGGGTACTATAGAAAGAAATTTTGGAGATTTACTCGTTAGTGACAACGACAAAGAAATTGTTACGAGTAAAGAAGAGATGAGCTTAAAGGAAGAAGGTTCTTCATCAATGCCAAAAGAATGGAGTGAGTTTGAGATGAGTATGATGGGAGAACTCAGTTTCTTTCTTGGACTTCAAATCAAACACCTCAAGAATGGTATCTTCATCAATCAAGAGAAATACACTAAAGATTTGCTCAAAAGATTCAAGTTCAATGGAGGTAAGATTGCAAGAACTCCCATGAGCACATCCACTAAGCTTGACAAGGATGAAAAAGGTAAAAGTGTGGATATTAAAGCTTATCGAGGTATGATTGGATCTTTACTTTACTTGACCGCTAGTAGACCCGATATTATGTTTAGTATTTTGCCGGAAGCTTACTTGATCGTAAAAGTACTAGTGGAACTTGTCAATTTCTTGGTAGTTCCTTAG MKATWDDSDESASGSDEEVANFCFMAHSDNEDEQEDEQEDEVCLKASKKNKWYLDSGCSRHMTGNPSKFVNLSKKDGGLVTFGDNKKGKIIGKGTIERNFGDLLVSDNDKEIVTSKEEMSLKEEGSSSMPKEWSEFEMSMMGELSFFLGLQIKHLKNGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKDEKGKSVDIKAYRGMIGSLLYLTASRPDIMFSILPEAYLIVKVLVELVNFLVVP Homology
BLAST of CmoCh20G010230 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 3.4e-10 Identity = 39/119 (32.77%), Postives = 63/119 (52.94%), Query Frame = 0
BLAST of CmoCh20G010230 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 9.9e-10 Identity = 39/126 (30.95%), Postives = 63/126 (50.00%), Query Frame = 0
BLAST of CmoCh20G010230 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 1.1e-08 Identity = 35/97 (36.08%), Postives = 55/97 (56.70%), Query Frame = 0
BLAST of CmoCh20G010230 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1) HSP 1 Score: 52.4 bits (124), Expect = 8.7e-06 Identity = 49/170 (28.82%), Postives = 79/170 (46.47%), Query Frame = 0
BLAST of CmoCh20G010230 vs. ExPASy TrEMBL
Match: A0A438DCH9 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_1061 PE=4 SV=1) HSP 1 Score: 230.3 bits (586), Expect = 8.6e-57 Identity = 138/261 (52.87%), Postives = 163/261 (62.45%), Query Frame = 0
BLAST of CmoCh20G010230 vs. ExPASy TrEMBL
Match: A0A438GM43 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_2255 PE=4 SV=1) HSP 1 Score: 228.8 bits (582), Expect = 2.5e-56 Identity = 135/261 (51.72%), Postives = 166/261 (63.60%), Query Frame = 0
BLAST of CmoCh20G010230 vs. ExPASy TrEMBL
Match: A0A438DNB1 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_520 PE=4 SV=1) HSP 1 Score: 226.5 bits (576), Expect = 1.2e-55 Identity = 137/261 (52.49%), Postives = 164/261 (62.84%), Query Frame = 0
BLAST of CmoCh20G010230 vs. ExPASy TrEMBL
Match: A0A438JPC8 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_2045 PE=4 SV=1) HSP 1 Score: 217.6 bits (553), Expect = 5.8e-53 Identity = 127/238 (53.36%), Postives = 155/238 (65.13%), Query Frame = 0
BLAST of CmoCh20G010230 vs. ExPASy TrEMBL
Match: A0A438KKN1 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_2565 PE=4 SV=1) HSP 1 Score: 215.7 bits (548), Expect = 2.2e-52 Identity = 135/261 (51.72%), Postives = 159/261 (60.92%), Query Frame = 0
BLAST of CmoCh20G010230 vs. NCBI nr
Match: RVW33148.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]) HSP 1 Score: 230.3 bits (586), Expect = 1.8e-56 Identity = 138/261 (52.87%), Postives = 163/261 (62.45%), Query Frame = 0
BLAST of CmoCh20G010230 vs. NCBI nr
Match: RVW73244.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]) HSP 1 Score: 228.8 bits (582), Expect = 5.2e-56 Identity = 135/261 (51.72%), Postives = 166/261 (63.60%), Query Frame = 0
BLAST of CmoCh20G010230 vs. NCBI nr
Match: RVW36924.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]) HSP 1 Score: 226.5 bits (576), Expect = 2.6e-55 Identity = 137/261 (52.49%), Postives = 164/261 (62.84%), Query Frame = 0
BLAST of CmoCh20G010230 vs. NCBI nr
Match: RVX10821.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]) HSP 1 Score: 217.6 bits (553), Expect = 1.2e-52 Identity = 127/238 (53.36%), Postives = 155/238 (65.13%), Query Frame = 0
BLAST of CmoCh20G010230 vs. NCBI nr
Match: RVX21766.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]) HSP 1 Score: 215.7 bits (548), Expect = 4.5e-52 Identity = 135/261 (51.72%), Postives = 159/261 (60.92%), Query Frame = 0
BLAST of CmoCh20G010230 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 ) HSP 1 Score: 65.5 bits (158), Expect = 7.0e-11 Identity = 38/92 (41.30%), Postives = 49/92 (53.26%), Query Frame = 0
BLAST of CmoCh20G010230 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein ) HSP 1 Score: 62.0 bits (149), Expect = 7.8e-10 Identity = 35/97 (36.08%), Postives = 55/97 (56.70%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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