CmoCh20G007320 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh20G007320
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionzinc-regulated protein 8-like
LocationCmo_Chr20: 3641412 .. 3641774 (-)
RNA-Seq ExpressionCmoCh20G007320
SyntenyCmoCh20G007320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAATCCTCTCCCACTTTCCTCTCCTCCGATCGACTTCTCAGCTCATCGGAATTAGAATTTTCCGACATCGAAATGACCCCTCTTCAATCCTACACCAGCCTCAAGGACCTCCTGCCGGATACCCCCTCGCCGCCTACCTCCGCCGCCTACCCTCTCCAATGCCCCGCCTGGGACGAACTCCCCATCAAAAACCCACTCGTCAAACACGCCGCCTTGGCCTACCTGCAGCCGATGCTCACCCCGCCAGCCACCGGCGAACGTAGCTTTATGCGCAGGCTCAAGAAGCACGGATTCGGATGCATCGAGTGGCTCGTCGCCGTCATCGGAGAACTCTCCGGTGGAGTCCGCCGGTGGTAA

mRNA sequence

ATGGAAGAATCCTCTCCCACTTTCCTCTCCTCCGATCGACTTCTCAGCTCATCGGAATTAGAATTTTCCGACATCGAAATGACCCCTCTTCAATCCTACACCAGCCTCAAGGACCTCCTGCCGGATACCCCCTCGCCGCCTACCTCCGCCGCCTACCCTCTCCAATGCCCCGCCTGGGACGAACTCCCCATCAAAAACCCACTCGTCAAACACGCCGCCTTGGCCTACCTGCAGCCGATGCTCACCCCGCCAGCCACCGGCGAACGTAGCTTTATGCGCAGGCTCAAGAAGCACGGATTCGGATGCATCGAGTGGCTCGTCGCCGTCATCGGAGAACTCTCCGGTGGAGTCCGCCGGTGGTAA

Coding sequence (CDS)

ATGGAAGAATCCTCTCCCACTTTCCTCTCCTCCGATCGACTTCTCAGCTCATCGGAATTAGAATTTTCCGACATCGAAATGACCCCTCTTCAATCCTACACCAGCCTCAAGGACCTCCTGCCGGATACCCCCTCGCCGCCTACCTCCGCCGCCTACCCTCTCCAATGCCCCGCCTGGGACGAACTCCCCATCAAAAACCCACTCGTCAAACACGCCGCCTTGGCCTACCTGCAGCCGATGCTCACCCCGCCAGCCACCGGCGAACGTAGCTTTATGCGCAGGCTCAAGAAGCACGGATTCGGATGCATCGAGTGGCTCGTCGCCGTCATCGGAGAACTCTCCGGTGGAGTCCGCCGGTGGTAA

Protein sequence

MEESSPTFLSSDRLLSSSELEFSDIEMTPLQSYTSLKDLLPDTPSPPTSAAYPLQCPAWDELPIKNPLVKHAALAYLQPMLTPPATGERSFMRRLKKHGFGCIEWLVAVIGELSGGVRRW
Homology
BLAST of CmoCh20G007320 vs. ExPASy TrEMBL
Match: A0A0A0LPR9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G271440 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.2e-34
Identity = 83/111 (74.77%), Postives = 91/111 (81.98%), Query Frame = 0

Query: 5   SPT-FLSSDRLLSSSELEFS-DIEMTPLQSYTSLKDLLPDTPSPPTSAAYPLQCPAWDEL 64
           SPT FLS +  LSS ELEFS DIEMTPLQSYTSLKDLLPD+PSPP SA      PA+D+L
Sbjct: 12  SPTSFLSPNHPLSSPELEFSDDIEMTPLQSYTSLKDLLPDSPSPPPSAT----SPAFDQL 71

Query: 65  PIKNPLVKHAALAYLQPMLTPPATGERSFMRRLKKHGFGCIEWLVAVIGEL 114
           PIKNPLVKHAALAYLQPMLTPP T   +F+R LKKHGFGCIEWL AV+ E+
Sbjct: 72  PIKNPLVKHAALAYLQPMLTPPTTSHPTFLRILKKHGFGCIEWLAAVVHEV 118

BLAST of CmoCh20G007320 vs. ExPASy TrEMBL
Match: A0A6P4ADJ4 (zinc-regulated protein 8-like OS=Ziziphus jujuba OX=326968 GN=LOC107427391 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.0e-18
Identity = 60/116 (51.72%), Postives = 70/116 (60.34%), Query Frame = 0

Query: 5   SPTFLSSDRLLSSSELEFSDIEMTPLQS--YTSLKDLLPDTPSPPTSAAYPLQCPAWDEL 64
           SPTFL  D  L S E + SDIEM  +QS  YTSLKDLLP  PSPP +   P    +W E+
Sbjct: 27  SPTFLFHDGGLDSPEFKVSDIEMITIQSLTYTSLKDLLP--PSPPPAIMSPTHNSSWHEI 86

Query: 65  PIKNPLVKHAALAYLQPMLTPPATGERSFMRRLKKH--------GFGCIEWLVAVI 111
           PI+NPLVKHAALAYLQPM TP    ++    +LK          GFGC  WL  V+
Sbjct: 87  PIRNPLVKHAALAYLQPMSTPTEADDKGLFGKLKDKCLCGAAGGGFGCFGWLGDVV 140

BLAST of CmoCh20G007320 vs. ExPASy TrEMBL
Match: A0A251MZ17 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G169400 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.8e-18
Identity = 62/128 (48.44%), Postives = 81/128 (63.28%), Query Frame = 0

Query: 5   SPTFLSSDRLLSSSELEFSDIEMTPLQ--SYTSLKDLLPDTPSPPTSAAYPLQCPAWDEL 64
           SP+FL  +      E+E SDIEM  +Q  +YTSLKDLLP   SPPT  + P Q  +W E+
Sbjct: 21  SPSFLLPN---GFGEIEISDIEMITIQTVTYTSLKDLLP--ASPPTIMS-PTQNSSWHEI 80

Query: 65  PIKNPLVKHAALAYLQPMLTPPATGERSFMRRLKK-------HGFGCIEWL----VAVIG 120
           PIKNPLVKHAALAYLQPM TPP  G++  +R L++       +G GC  WL    ++ + 
Sbjct: 81  PIKNPLVKHAALAYLQPMSTPPEVGDKGLLRMLREKCLCEGTNGVGCFSWLGDVVLSGVR 140

BLAST of CmoCh20G007320 vs. ExPASy TrEMBL
Match: M5VHF3 (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa022032mg PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.8e-18
Identity = 62/128 (48.44%), Postives = 81/128 (63.28%), Query Frame = 0

Query: 5   SPTFLSSDRLLSSSELEFSDIEMTPLQ--SYTSLKDLLPDTPSPPTSAAYPLQCPAWDEL 64
           SP+FL  +      E+E SDIEM  +Q  +YTSLKDLLP   SPPT  + P Q  +W E+
Sbjct: 21  SPSFLLPN---GFGEIEISDIEMITIQTVTYTSLKDLLP--ASPPTIMS-PTQNSSWHEI 80

Query: 65  PIKNPLVKHAALAYLQPMLTPPATGERSFMRRLKK-------HGFGCIEWL----VAVIG 120
           PIKNPLVKHAALAYLQPM TPP  G++  +R L++       +G GC  WL    ++ + 
Sbjct: 81  PIKNPLVKHAALAYLQPMSTPPEVGDKGLLRMLREKCLCEGTNGVGCFSWLGDVVLSGVR 140

BLAST of CmoCh20G007320 vs. ExPASy TrEMBL
Match: A0A5E4EIX6 (PREDICTED: MTR_1g112960 OS=Prunus dulcis OX=3755 GN=ALMOND_2B029195 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 5.0e-18
Identity = 62/128 (48.44%), Postives = 81/128 (63.28%), Query Frame = 0

Query: 5   SPTFLSSDRLLSSSELEFSDIEMTPLQ--SYTSLKDLLPDTPSPPTSAAYPLQCPAWDEL 64
           SP+FL  +      E+E SDIEM  +Q  +YTSLKDLLP   SPPT  + P Q  +W E+
Sbjct: 21  SPSFLLPN---GFGEIEISDIEMITIQTVTYTSLKDLLP--ASPPTIMS-PTQNSSWHEI 80

Query: 65  PIKNPLVKHAALAYLQPMLTPPATGERSFMRRLKK-------HGFGCIEWL----VAVIG 120
           PIKNPLVKHAALAYLQPM TPP  G++  +R L++       +G GC  WL    ++ + 
Sbjct: 81  PIKNPLVKHAALAYLQPMSTPPEVGDKGLLRMLREKCLCEGANGVGCFAWLGDVVLSGVR 140

BLAST of CmoCh20G007320 vs. NCBI nr
Match: KAG6571006.1 (hypothetical protein SDJN03_29921, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010836.1 hypothetical protein SDJN02_27632, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 240.7 bits (613), Expect = 6.3e-60
Identity = 117/120 (97.50%), Postives = 118/120 (98.33%), Query Frame = 0

Query: 1   MEESSPTFLSSDRLLSSSELEFSDIEMTPLQSYTSLKDLLPDTPSPPTSAAYPLQCPAWD 60
           MEESSPTFLSSDRLLSSSELEFSDIEMTPLQSYTSLKDLLPDTPSPP SAAYPLQCPAWD
Sbjct: 1   MEESSPTFLSSDRLLSSSELEFSDIEMTPLQSYTSLKDLLPDTPSPPPSAAYPLQCPAWD 60

Query: 61  ELPIKNPLVKHAALAYLQPMLTPPATGERSFMRRLKKHGFGCIEWLVAVIGELSGGVRRW 120
           ELPIKNPLVKHAALAYLQPMLTPPA G+RSFMRRLKKHGFGCIEWLVAVIGELSGGVRRW
Sbjct: 61  ELPIKNPLVKHAALAYLQPMLTPPAAGDRSFMRRLKKHGFGCIEWLVAVIGELSGGVRRW 120

BLAST of CmoCh20G007320 vs. NCBI nr
Match: XP_015893260.1 (zinc-regulated protein 8-like [Ziziphus jujuba])

HSP 1 Score: 102.8 bits (255), Expect = 2.1e-18
Identity = 60/116 (51.72%), Postives = 70/116 (60.34%), Query Frame = 0

Query: 5   SPTFLSSDRLLSSSELEFSDIEMTPLQS--YTSLKDLLPDTPSPPTSAAYPLQCPAWDEL 64
           SPTFL  D  L S E + SDIEM  +QS  YTSLKDLLP  PSPP +   P    +W E+
Sbjct: 27  SPTFLFHDGGLDSPEFKVSDIEMITIQSLTYTSLKDLLP--PSPPPAIMSPTHNSSWHEI 86

Query: 65  PIKNPLVKHAALAYLQPMLTPPATGERSFMRRLKKH--------GFGCIEWLVAVI 111
           PI+NPLVKHAALAYLQPM TP    ++    +LK          GFGC  WL  V+
Sbjct: 87  PIRNPLVKHAALAYLQPMSTPTEADDKGLFGKLKDKCLCGAAGGGFGCFGWLGDVV 140

BLAST of CmoCh20G007320 vs. NCBI nr
Match: XP_007199228.2 (uncharacterized protein LOC18768692 [Prunus persica] >ONH92342.1 hypothetical protein PRUPE_8G169400 [Prunus persica])

HSP 1 Score: 100.9 bits (250), Expect = 7.8e-18
Identity = 62/128 (48.44%), Postives = 81/128 (63.28%), Query Frame = 0

Query: 5   SPTFLSSDRLLSSSELEFSDIEMTPLQ--SYTSLKDLLPDTPSPPTSAAYPLQCPAWDEL 64
           SP+FL  +      E+E SDIEM  +Q  +YTSLKDLLP   SPPT  + P Q  +W E+
Sbjct: 21  SPSFLLPN---GFGEIEISDIEMITIQTVTYTSLKDLLP--ASPPTIMS-PTQNSSWHEI 80

Query: 65  PIKNPLVKHAALAYLQPMLTPPATGERSFMRRLKK-------HGFGCIEWL----VAVIG 120
           PIKNPLVKHAALAYLQPM TPP  G++  +R L++       +G GC  WL    ++ + 
Sbjct: 81  PIKNPLVKHAALAYLQPMSTPPEVGDKGLLRMLREKCLCEGTNGVGCFSWLGDVVLSGVR 140

BLAST of CmoCh20G007320 vs. NCBI nr
Match: XP_034228819.1 (uncharacterized protein LOC117637881 [Prunus dulcis] >VVA15725.1 PREDICTED: MTR_1g112960 [Prunus dulcis])

HSP 1 Score: 100.5 bits (249), Expect = 1.0e-17
Identity = 62/128 (48.44%), Postives = 81/128 (63.28%), Query Frame = 0

Query: 5   SPTFLSSDRLLSSSELEFSDIEMTPLQ--SYTSLKDLLPDTPSPPTSAAYPLQCPAWDEL 64
           SP+FL  +      E+E SDIEM  +Q  +YTSLKDLLP   SPPT  + P Q  +W E+
Sbjct: 21  SPSFLLPN---GFGEIEISDIEMITIQTVTYTSLKDLLP--ASPPTIMS-PTQNSSWHEI 80

Query: 65  PIKNPLVKHAALAYLQPMLTPPATGERSFMRRLKK-------HGFGCIEWL----VAVIG 120
           PIKNPLVKHAALAYLQPM TPP  G++  +R L++       +G GC  WL    ++ + 
Sbjct: 81  PIKNPLVKHAALAYLQPMSTPPEVGDKGLLRMLREKCLCEGANGVGCFAWLGDVVLSGVR 140

BLAST of CmoCh20G007320 vs. NCBI nr
Match: KAB2636267.1 (hypothetical protein D8674_026801 [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 100.5 bits (249), Expect = 1.0e-17
Identity = 63/127 (49.61%), Postives = 79/127 (62.20%), Query Frame = 0

Query: 1   MEESSPTFLSSDRLLSSSELEFSDIEMTPLQ--SYTSLKDLLPDTPSPPTSAAYPLQCPA 60
           +   SPTFL  +      E+E SDIEM  +Q  SYTSLKDLLP   SPP S   P+   +
Sbjct: 59  LNSHSPTFLLHNGF--GDEIEISDIEMVTIQTVSYTSLKDLLP--ASPPLSVMSPIHNSS 118

Query: 61  W-DELPIKNPLVKHAALAYLQPMLTPPATGERSFMRRL--KKH-GFGCIEW----LVAVI 118
           W DE+PIKNPLVKHAALAYLQPM TPP  G++  +R L  K H   GC+ W    ++  +
Sbjct: 119 WHDEIPIKNPLVKHAALAYLQPMSTPPEVGDKGLLRMLGEKCHCELGCLAWVGDVVLKTV 178

BLAST of CmoCh20G007320 vs. TAIR 10
Match: AT3G52520.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06280.3); Has 24 Blast hits to 24 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 2.8e-05
Identity = 31/73 (42.47%), Postives = 42/73 (57.53%), Query Frame = 0

Query: 29  PLQSYTSLKDLLP------DTPSPPTSAAYPLQCPAWDELPIKNPLVKHAALAYLQPMLT 88
           PL  YTSLKD+LP      D+P+   + A  +  P    + I+N LVK AA +YLQP  T
Sbjct: 37  PLPCYTSLKDILPSSSTTVDSPAISFAVASAVSGPT---ITIRNRLVKQAACSYLQPS-T 96

Query: 89  PPATGERSFMRRL 96
           P  +   SF+RR+
Sbjct: 97  PTPSSNPSFLRRV 105

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LPR92.2e-3474.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G271440 PE=4 SV=1[more]
A0A6P4ADJ41.0e-1851.72zinc-regulated protein 8-like OS=Ziziphus jujuba OX=326968 GN=LOC107427391 PE=4 ... [more]
A0A251MZ173.8e-1848.44Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G169400 PE=4 SV=1[more]
M5VHF33.8e-1848.44Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa022032m... [more]
A0A5E4EIX65.0e-1848.44PREDICTED: MTR_1g112960 OS=Prunus dulcis OX=3755 GN=ALMOND_2B029195 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6571006.16.3e-6097.50hypothetical protein SDJN03_29921, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_015893260.12.1e-1851.72zinc-regulated protein 8-like [Ziziphus jujuba][more]
XP_007199228.27.8e-1848.44uncharacterized protein LOC18768692 [Prunus persica] >ONH92342.1 hypothetical pr... [more]
XP_034228819.11.0e-1748.44uncharacterized protein LOC117637881 [Prunus dulcis] >VVA15725.1 PREDICTED: MTR_... [more]
KAB2636267.11.0e-1749.61hypothetical protein D8674_026801 [Pyrus ussuriensis x Pyrus communis][more]
Match NameE-valueIdentityDescription
AT3G52520.12.8e-0542.47unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34569:SF12SUBFAMILY NOT NAMEDcoord: 17..110
NoneNo IPR availablePANTHERPTHR34569EXPRESSED PROTEINcoord: 17..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G007320.1CmoCh20G007320.1mRNA