CmoCh20G005890 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh20G005890
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Pentatricopeptide repeat-containing protein, putative
Location	Cmo_Chr20: 2894037 .. 2895305 (+)
RNA-Seq Expression	CmoCh20G005890
Synteny	CmoCh20G005890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCAAACTATCTACGCTTGCTTTCCTACACTAAGCAATTGAGCTTTTATGCCAACCATGGCAACCACGAGCAGGCTCTTGCTCTTTTCCACCACATGCAGGCCTCACTAGCCCTTGCTCTAGACGCCCACGTCTTCTCTCTCGTTCTCAAGTCCTGCACCGCCATCCGCCGACCCCATTTGGGCACTGCCATCCATGCCCACGCTACTAAATCCTCCCTCCTCTCAAGCCCATTTGTTGCCTGTGCCCTAGTTGACATGTACGGCAAATCCATGTCCGTTCCACTCGCACGGAAGCTGTTCGATGAAATTCCTCATAGAACTGTCGTCGCCTGGAATGCCATGTTATCACTATACACGCACTCAAACATGTTACCTGATGCTCTCCGGTTGTTTGAAGCTATGGATGTGCCCCCCAATACTTCATCCTTCAATCCAATAATTGCAGGGTTGTTGGATGATGGATTCAAGGCCATTGCTTTCTATCGCAAGATGCAACAATGTGGGTTGAAGCCTAATTTAATTACCCTTCTTGCTTTATTACCTGCAAGTGTTGGAGTTGCGGCTTTGGACTTGATTAAACAAATTCATGGTTTTGCCATGAGAAATGATCTTGGTTGTCATCCCCAGTTAAGCAGTGGCCTTGTTGAGGCCTATGGGCGATGCGGCTGTCTCAATTATGCACACAATGTGTTCGATAAAATGCACGAAAGAGATGTAGTCGCATGGAGCAGTTTAATATCAGCATACGCTCTTCATGGGGAGGCTAGAACTGCTTTAAACATCTTTCAACAAATGGAATTGTGTAAAGTGCAGCCTGATGAGATTACATTCATAGGAGTGTTGAAGGCTTGTAGTCACGTGGGGTTAGCTGATGAAGCATTGGATTATTTCAGTCGTATGCAGAGAGATTACGGTCTACAAGCAAGCAGCGACCATTATTCTTGTCTAGTAGATGCATTGAGCAGAGCAGGGAGATTACACGAGGCATATGAGATTATCCGCGAGATGCCAGTGAGGGTGACGGCTAAAGCTTGGGGCGCCCTCCTCGGGGCTTGTCGAAACTATGGGGAGTTAGAGCTGGCGGAGATTGCAGGGAAGGCTTTGTTTGATATAGAGCCTGAGAATGCTGCCAATTATGTGCTGTTGGGTAAAATGTATGCAAGTGTAGGGAGGCATGAGGAAGCTCAAAGACTGAGAATGGAAATGAAAGAGAGGAGAGTTAAGGCAGTACCTGGAAGTAGCTGGGTTGTTTATCAGGATTGA

mRNA sequence

ATGGGTTCAAACTATCTACGCTTGCTTTCCTACACTAAGCAATTGAGCTTTTATGCCAACCATGGCAACCACGAGCAGGCTCTTGCTCTTTTCCACCACATGCAGGCCTCACTAGCCCTTGCTCTAGACGCCCACGTCTTCTCTCTCGTTCTCAAGTCCTGCACCGCCATCCGCCGACCCCATTTGGGCACTGCCATCCATGCCCACGCTACTAAATCCTCCCTCCTCTCAAGCCCATTTGTTGCCTGTGCCCTAGTTGACATGTACGGCAAATCCATGTCCGTTCCACTCGCACGGAAGCTGTTCGATGAAATTCCTCATAGAACTGTCGTCGCCTGGAATGCCATGTTATCACTATACACGCACTCAAACATGTTACCTGATGCTCTCCGGTTGTTTGAAGCTATGGATGTGCCCCCCAATACTTCATCCTTCAATCCAATAATTGCAGGGTTGTTGGATGATGGATTCAAGGCCATTGCTTTCTATCGCAAGATGCAACAATGTGGGTTGAAGCCTAATTTAATTACCCTTCTTGCTTTATTACCTGCAAGTGTTGGAGTTGCGGCTTTGGACTTGATTAAACAAATTCATGGTTTTGCCATGAGAAATGATCTTGGTTGTCATCCCCAGTTAAGCAGTGGCCTTGTTGAGGCCTATGGGCGATGCGGCTGTCTCAATTATGCACACAATGTGTTCGATAAAATGCACGAAAGAGATGTAGTCGCATGGAGCAGTTTAATATCAGCATACGCTCTTCATGGGGAGGCTAGAACTGCTTTAAACATCTTTCAACAAATGGAATTGTGTAAAGTGCAGCCTGATGAGATTACATTCATAGGAGTGTTGAAGGCTTGTAGTCACGTGGGGTTAGCTGATGAAGCATTGGATTATTTCAGTCGTATGCAGAGAGATTACGGTCTACAAGCAAGCAGCGACCATTATTCTTGTCTAGTAGATGCATTGAGCAGAGCAGGGAGATTACACGAGGCATATGAGATTATCCGCGAGATGCCAGTGAGGGTGACGGCTAAAGCTTGGGGCGCCCTCCTCGGGGCTTGTCGAAACTATGGGGAGTTAGAGCTGGCGGAGATTGCAGGGAAGGCTTTGTTTGATATAGAGCCTGAGAATGCTGCCAATTATGTGCTGTTGGGTAAAATGTATGCAAGTGTAGGGAGGCATGAGGAAGCTCAAAGACTGAGAATGGAAATGAAAGAGAGGAGAGTTAAGGCAGTACCTGGAAGTAGCTGGGTTGTTTATCAGGATTGA

Coding sequence (CDS)

ATGGGTTCAAACTATCTACGCTTGCTTTCCTACACTAAGCAATTGAGCTTTTATGCCAACCATGGCAACCACGAGCAGGCTCTTGCTCTTTTCCACCACATGCAGGCCTCACTAGCCCTTGCTCTAGACGCCCACGTCTTCTCTCTCGTTCTCAAGTCCTGCACCGCCATCCGCCGACCCCATTTGGGCACTGCCATCCATGCCCACGCTACTAAATCCTCCCTCCTCTCAAGCCCATTTGTTGCCTGTGCCCTAGTTGACATGTACGGCAAATCCATGTCCGTTCCACTCGCACGGAAGCTGTTCGATGAAATTCCTCATAGAACTGTCGTCGCCTGGAATGCCATGTTATCACTATACACGCACTCAAACATGTTACCTGATGCTCTCCGGTTGTTTGAAGCTATGGATGTGCCCCCCAATACTTCATCCTTCAATCCAATAATTGCAGGGTTGTTGGATGATGGATTCAAGGCCATTGCTTTCTATCGCAAGATGCAACAATGTGGGTTGAAGCCTAATTTAATTACCCTTCTTGCTTTATTACCTGCAAGTGTTGGAGTTGCGGCTTTGGACTTGATTAAACAAATTCATGGTTTTGCCATGAGAAATGATCTTGGTTGTCATCCCCAGTTAAGCAGTGGCCTTGTTGAGGCCTATGGGCGATGCGGCTGTCTCAATTATGCACACAATGTGTTCGATAAAATGCACGAAAGAGATGTAGTCGCATGGAGCAGTTTAATATCAGCATACGCTCTTCATGGGGAGGCTAGAACTGCTTTAAACATCTTTCAACAAATGGAATTGTGTAAAGTGCAGCCTGATGAGATTACATTCATAGGAGTGTTGAAGGCTTGTAGTCACGTGGGGTTAGCTGATGAAGCATTGGATTATTTCAGTCGTATGCAGAGAGATTACGGTCTACAAGCAAGCAGCGACCATTATTCTTGTCTAGTAGATGCATTGAGCAGAGCAGGGAGATTACACGAGGCATATGAGATTATCCGCGAGATGCCAGTGAGGGTGACGGCTAAAGCTTGGGGCGCCCTCCTCGGGGCTTGTCGAAACTATGGGGAGTTAGAGCTGGCGGAGATTGCAGGGAAGGCTTTGTTTGATATAGAGCCTGAGAATGCTGCCAATTATGTGCTGTTGGGTAAAATGTATGCAAGTGTAGGGAGGCATGAGGAAGCTCAAAGACTGAGAATGGAAATGAAAGAGAGGAGAGTTAAGGCAGTACCTGGAAGTAGCTGGGTTGTTTATCAGGATTGA

Protein sequence

MGSNYLRLLSYTKQLSFYANHGNHEQALALFHHMQASLALALDAHVFSLVLKSCTAIRRPHLGTAIHAHATKSSLLSSPFVACALVDMYGKSMSVPLARKLFDEIPHRTVVAWNAMLSLYTHSNMLPDALRLFEAMDVPPNTSSFNPIIAGLLDDGFKAIAFYRKMQQCGLKPNLITLLALLPASVGVAALDLIKQIHGFAMRNDLGCHPQLSSGLVEAYGRCGCLNYAHNVFDKMHERDVVAWSSLISAYALHGEARTALNIFQQMELCKVQPDEITFIGVLKACSHVGLADEALDYFSRMQRDYGLQASSDHYSCLVDALSRAGRLHEAYEIIREMPVRVTAKAWGALLGACRNYGELELAEIAGKALFDIEPENAANYVLLGKMYASVGRHEEAQRLRMEMKERRVKAVPGSSWVVYQD

Homology

[Close]

BLAST of CmoCh20G005890 vs. ExPASy Swiss-Prot
Match: Q9LR72 (Putative pentatricopeptide repeat-containing protein At1g03510 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E3 PE=3 SV=1)

HSP 1 Score: 550.8 bits (1418), Expect = 1.3e-155
Identity = 277/423 (65.48%), Postives = 324/423 (76.60%), Query Frame = 0


Query: 3   SNYLRLLSYTKQLSFYANHGNHEQALALFHHMQASLALALDAHVFSLVLKSCTAIRRPHL 62
           S+  +L+S TKQLS YAN GNHEQAL LF  M +S AL LDAHVFSL LKSC A  RP L
Sbjct: 7   SSCTKLISLTKQLSSYANQGNHEQALNLFLQMHSSFALPLDAHVFSLALKSCAAAFRPVL 66

Query: 63  GTAIHAHATKSSLLSSPFVACALVDMYGKSMSVPLARKLFDEIPHRTVVAWNAMLSLYTH 122
           G ++HAH+ KS+ LS+PFV CAL+DMYGK +SV  ARKLFDEIP R  V WNAM+S YTH
Sbjct: 67  GGSVHAHSVKSNFLSNPFVGCALLDMYGKCLSVSHARKLFDEIPQRNAVVWNAMISHYTH 126

Query: 123 SNMLPDALRLFEAMDVPPNTSSFNPIIAGLL---DDGFKAIAFYRKMQQCGLKPNLITLL 182
              + +A+ L+EAMDV PN SSFN II GL+   D  ++AI FYRKM +   KPNLITLL
Sbjct: 127 CGKVKEAVELYEAMDVMPNESSFNAIIKGLVGTEDGSYRAIEFYRKMIEFRFKPNLITLL 186

Query: 183 ALLPASVGVAALDLIKQIHGFAMRNDLGCHPQLSSGLVEAYGRCGCLNYAHNVFDKMHER 242
           AL+ A   + A  LIK+IH +A RN +  HPQL SGLVEAYGRCG + Y   VFD M +R
Sbjct: 187 ALVSACSAIGAFRLIKEIHSYAFRNLIEPHPQLKSGLVEAYGRCGSIVYVQLVFDSMEDR 246

Query: 243 DVVAWSSLISAYALHGEARTALNIFQQMELCKVQPDEITFIGVLKACSHVGLADEALDYF 302
           DVVAWSSLISAYALHG+A +AL  FQ+MEL KV PD+I F+ VLKACSH GLADEAL YF
Sbjct: 247 DVVAWSSLISAYALHGDAESALKTFQEMELAKVTPDDIAFLNVLKACSHAGLADEALVYF 306

Query: 303 SRMQRDYGLQASSDHYSCLVDALSRAGRLHEAYEIIREMPVRVTAKAWGALLGACRNYGE 362
            RMQ DYGL+AS DHYSCLVD LSR GR  EAY++I+ MP + TAK WGALLGACRNYGE
Sbjct: 307 KRMQGDYGLRASKDHYSCLVDVLSRVGRFEEAYKVIQAMPEKPTAKTWGALLGACRNYGE 366

Query: 363 LELAEIAGKALFDIEPENAANYVLLGKMYASVGRHEEAQRLRMEMKERRVKAVPGSSWVV 422
           +ELAEIA + L  +EPEN ANYVLLGK+Y SVGR EEA+RLR++MKE  VK  PGSSW +
Sbjct: 367 IELAEIAARELLMVEPENPANYVLLGKIYMSVGRQEEAERLRLKMKESGVKVSPGSSWCL 426

[Close]

BLAST of CmoCh20G005890 vs. ExPASy Swiss-Prot
Match: Q9SIL5 (Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E78 PE=2 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 2.3e-75
Identity = 143/378 (37.83%), Postives = 226/378 (59.79%), Query Frame = 0


Query: 43  DAHVFSLVLKSCTAIRRPHLGTAIHAHATKSSLLSSPFVACALVDMYGKSMSVPLARKLF 102
           D   F  + KSC ++   +LG  +H H  K           AL+DMY K   +  A K+F
Sbjct: 108 DRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVF 167

Query: 103 DEIPHRTVVAWNAMLSLYTHSNMLPDALRLFEAMDVPPNTSSFNPIIAGLLDDG--FKAI 162
           DE+  R V++WN++LS Y     +  A  LF  M +     S+  +I+G    G   +A+
Sbjct: 168 DEMYERDVISWNSLLSGYARLGQMKKAKGLFHLM-LDKTIVSWTAMISGYTGIGCYVEAM 227

Query: 163 AFYRKMQQCGLKPNLITLLALLPASVGVAALDLIKQIHGFAMRNDLGCHPQLSSGLVEAY 222
            F+R+MQ  G++P+ I+L+++LP+   + +L+L K IH +A R        + + L+E Y
Sbjct: 228 DFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMY 287

Query: 223 GRCGCLNYAHNVFDKMHERDVVAWSSLISAYALHGEARTALNIFQQMELCKVQPDEITFI 282
            +CG ++ A  +F +M  +DV++WS++IS YA HG A  A+  F +M+  KV+P+ ITF+
Sbjct: 288 SKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFL 347

Query: 283 GVLKACSHVGLADEALDYFSRMQRDYGLQASSDHYSCLVDALSRAGRLHEAYEIIREMPV 342
           G+L ACSHVG+  E L YF  M++DY ++   +HY CL+D L+RAG+L  A EI + MP+
Sbjct: 348 GLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPM 407

Query: 343 RVTAKAWGALLGACRNYGELELAEIAGKALFDIEPENAANYVLLGKMYASVGRHEEAQRL 402
           +  +K WG+LL +CR  G L++A +A   L ++EPE+  NYVLL  +YA +G+ E+  RL
Sbjct: 408 KPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRL 467

Query: 403 RMEMKERRVKAVPGSSWV 419
           R  ++   +K  PG S +
Sbjct: 468 RKMIRNENMKKTPGGSLI 484

[Close]

BLAST of CmoCh20G005890 vs. ExPASy Swiss-Prot
Match: Q9LNU6 (Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H21 PE=2 SV=2)

HSP 1 Score: 276.9 bits (707), Expect = 3.7e-73
Identity = 149/416 (35.82%), Postives = 238/416 (57.21%), Query Frame = 0


Query: 8   LLSYTKQLSFYANHGNHEQALALFHHMQASLALALDAHVFSLVLKSCTAIRRPHLGTAIH 67
           ++S+   LS +   G H++A+ +F  +   L    D    S VL S       ++G  IH
Sbjct: 217 IVSWNGILSGFNRSGYHKEAVVMFQKIH-HLGFCPDQVTVSSVLPSVGDSEMLNMGRLIH 276

Query: 68  AHATKSSLLSSPFVACALVDMYGKSMSVPLARKLFDEIPHRTVVAWNAMLSLYTHSNMLP 127
            +  K  LL    V  A++DMYGKS  V     LF++         NA ++  + + ++ 
Sbjct: 277 GYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVD 336

Query: 128 DALRLFE---AMDVPPNTSSFNPIIAGLLDDG--FKAIAFYRKMQQCGLKPNLITLLALL 187
            AL +FE      +  N  S+  IIAG   +G   +A+  +R+MQ  G+KPN +T+ ++L
Sbjct: 337 KALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSML 396

Query: 188 PASVGVAALDLIKQIHGFAMRNDLGCHPQLSSGLVEAYGRCGCLNYAHNVFDKMHERDVV 247
           PA   +AAL   +  HGFA+R  L  +  + S L++ Y +CG +N +  VF+ M  +++V
Sbjct: 397 PACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLV 456

Query: 248 AWSSLISAYALHGEARTALNIFQQMELCKVQPDEITFIGVLKACSHVGLADEALDYFSRM 307
            W+SL++ +++HG+A+  ++IF+ +   +++PD I+F  +L AC  VGL DE   YF  M
Sbjct: 457 CWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMM 516

Query: 308 QRDYGLQASSDHYSCLVDALSRAGRLHEAYEIIREMPVRVTAKAWGALLGACRNYGELEL 367
             +YG++   +HYSC+V+ L RAG+L EAY++I+EMP    +  WGALL +CR    ++L
Sbjct: 517 SEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDL 576

Query: 368 AEIAGKALFDIEPENAANYVLLGKMYASVGRHEEAQRLRMEMKERRVKAVPGSSWV 419
           AEIA + LF +EPEN   YVLL  +YA+ G   E   +R +M+   +K  PG SW+
Sbjct: 577 AEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWI 631

[Close]

BLAST of CmoCh20G005890 vs. ExPASy Swiss-Prot
Match: Q7Y211 (Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H81 PE=2 SV=2)

HSP 1 Score: 271.9 bits (694), Expect = 1.2e-71
Identity = 146/413 (35.35%), Postives = 231/413 (55.93%), Query Frame = 0


Query: 11  YTKQLSFYANHGNHEQALALFHHMQASLALALDAHVFSLVLKSCTAIRRPHLGTAIHAHA 70
           +   ++ Y+ + + ++AL LF  M+ S  L  ++   + V+ +C          AIH   
Sbjct: 372 WNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFV 431

Query: 71  TKSSLLSSPFVACALVDMYGKSMSVPLARKLFDEIPHRTVVAWNAMLSLYTHSNMLPDAL 130
            K  L    FV   L+DMY +   + +A ++F ++  R +V WN M++ Y  S    DAL
Sbjct: 432 VKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDAL 491

Query: 131 RLFEAMDVPPNTSSFNPIIAGLLDDGFKAIAFYRKMQQCGLKPNLITLLALLPASVGVAA 190
            L   M       S                   +   +  LKPN ITL+ +LP+   ++A
Sbjct: 492 LLLHKMQNLERKVS-------------------KGASRVSLKPNSITLMTILPSCAALSA 551

Query: 191 LDLIKQIHGFAMRNDLGCHPQLSSGLVEAYGRCGCLNYAHNVFDKMHERDVVAWSSLISA 250
           L   K+IH +A++N+L     + S LV+ Y +CGCL  +  VFD++ +++V+ W+ +I A
Sbjct: 552 LAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMA 611

Query: 251 YALHGEARTALNIFQQMELCKVQPDEITFIGVLKACSHVGLADEALDYFSRMQRDYGLQA 310
           Y +HG  + A+++ + M +  V+P+E+TFI V  ACSH G+ DE L  F  M+ DYG++ 
Sbjct: 612 YGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEP 671

Query: 311 SSDHYSCLVDALSRAGRLHEAYEIIREMPVRVT-AKAWGALLGACRNYGELELAEIAGKA 370
           SSDHY+C+VD L RAGR+ EAY+++  MP     A AW +LLGA R +  LE+ EIA + 
Sbjct: 672 SSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQN 731

Query: 371 LFDIEPENAANYVLLGKMYASVGRHEEAQRLRMEMKERRVKAVPGSSWVVYQD 423
           L  +EP  A++YVLL  +Y+S G  ++A  +R  MKE+ V+  PG SW+ + D
Sbjct: 732 LIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGD 765

[Close]

BLAST of CmoCh20G005890 vs. ExPASy Swiss-Prot
Match: Q9STF3 (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRR2 PE=2 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 3.4e-71
Identity = 148/401 (36.91%), Postives = 221/401 (55.11%), Query Frame = 0


Query: 22  GNHEQALALFHHMQASLALALDAHVFSLVLKSCTA----IRRPHLGTAIHAHATKSSLLS 81
           G+ E+ L L+  M   + +  D   ++ VLK+C A    +     G  IHAH T+    S
Sbjct: 157 GHGEEVLGLYWKMN-RIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSS 216

Query: 82  SPFVACALVDMYGKSMSVPLARKLFDEIPHRTVVAWNAMLSLYTHSNMLPDALRLFEAMD 141
             ++   LVDMY +   V  A  +F  +P R VV+W+AM++ Y  +    +ALR F  M 
Sbjct: 217 HVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMM 276

Query: 142 VPPNTSSFNPIIAGLLDDGFKAIAFYRKMQQCGLKPNLITLLALLPASVGVAALDLIKQI 201
                SS                            PN +T++++L A   +AAL+  K I
Sbjct: 277 RETKDSS----------------------------PNSVTMVSVLQACASLAALEQGKLI 336

Query: 202 HGFAMRNDLGCHPQLSSGLVEAYGRCGCLNYAHNVFDKMHERDVVAWSSLISAYALHGEA 261
           HG+ +R  L     + S LV  YGRCG L     VFD+MH+RDVV+W+SLIS+Y +HG  
Sbjct: 337 HGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYG 396

Query: 262 RTALNIFQQMELCKVQPDEITFIGVLKACSHVGLADEALDYFSRMQRDYGLQASSDHYSC 321
           + A+ IF++M      P  +TF+ VL ACSH GL +E    F  M RD+G++   +HY+C
Sbjct: 397 KKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYAC 456

Query: 322 LVDALSRAGRLHEAYEIIREMPVRVTAKAWGALLGACRNYGELELAEIAGKALFDIEPEN 381
           +VD L RA RL EA +++++M      K WG+LLG+CR +G +ELAE A + LF +EP+N
Sbjct: 457 MVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKN 516

Query: 382 AANYVLLGKMYASVGRHEEAQRLRMEMKERRVKAVPGSSWV 419
           A NYVLL  +YA     +E +R++  ++ R ++ +PG  W+
Sbjct: 517 AGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWM 528

[Close]

BLAST of CmoCh20G005890 vs. ExPASy TrEMBL
Match: A0A6J1FYR9 (putative pentatricopeptide repeat-containing protein At1g03510 OS=Cucurbita moschata OX=3662 GN=LOC111449013 PE=4 SV=1)

HSP 1 Score: 847.8 bits (2189), Expect = 1.9e-242
Identity = 422/422 (100.00%), Postives = 422/422 (100.00%), Query Frame = 0


Query: 1   MGSNYLRLLSYTKQLSFYANHGNHEQALALFHHMQASLALALDAHVFSLVLKSCTAIRRP 60
           MGSNYLRLLSYTKQLSFYANHGNHEQALALFHHMQASLALALDAHVFSLVLKSCTAIRRP
Sbjct: 1   MGSNYLRLLSYTKQLSFYANHGNHEQALALFHHMQASLALALDAHVFSLVLKSCTAIRRP 60

Query: 61  HLGTAIHAHATKSSLLSSPFVACALVDMYGKSMSVPLARKLFDEIPHRTVVAWNAMLSLY 120
           HLGTAIHAHATKSSLLSSPFVACALVDMYGKSMSVPLARKLFDEIPHRTVVAWNAMLSLY
Sbjct: 61  HLGTAIHAHATKSSLLSSPFVACALVDMYGKSMSVPLARKLFDEIPHRTVVAWNAMLSLY 120

Query: 121 THSNMLPDALRLFEAMDVPPNTSSFNPIIAGLLDDGFKAIAFYRKMQQCGLKPNLITLLA 180
           THSNMLPDALRLFEAMDVPPNTSSFNPIIAGLLDDGFKAIAFYRKMQQCGLKPNLITLLA
Sbjct: 121 THSNMLPDALRLFEAMDVPPNTSSFNPIIAGLLDDGFKAIAFYRKMQQCGLKPNLITLLA 180

Query: 181 LLPASVGVAALDLIKQIHGFAMRNDLGCHPQLSSGLVEAYGRCGCLNYAHNVFDKMHERD 240
           LLPASVGVAALDLIKQIHGFAMRNDLGCHPQLSSGLVEAYGRCGCLNYAHNVFDKMHERD
Sbjct: 181 LLPASVGVAALDLIKQIHGFAMRNDLGCHPQLSSGLVEAYGRCGCLNYAHNVFDKMHERD 240

Query: 241 VVAWSSLISAYALHGEARTALNIFQQMELCKVQPDEITFIGVLKACSHVGLADEALDYFS 300
           VVAWSSLISAYALHGEARTALNIFQQMELCKVQPDEITFIGVLKACSHVGLADEALDYFS
Sbjct: 241 VVAWSSLISAYALHGEARTALNIFQQMELCKVQPDEITFIGVLKACSHVGLADEALDYFS 300

Query: 301 RMQRDYGLQASSDHYSCLVDALSRAGRLHEAYEIIREMPVRVTAKAWGALLGACRNYGEL 360
           RMQRDYGLQASSDHYSCLVDALSRAGRLHEAYEIIREMPVRVTAKAWGALLGACRNYGEL
Sbjct: 301 RMQRDYGLQASSDHYSCLVDALSRAGRLHEAYEIIREMPVRVTAKAWGALLGACRNYGEL 360

Query: 361 ELAEIAGKALFDIEPENAANYVLLGKMYASVGRHEEAQRLRMEMKERRVKAVPGSSWVVY 420
           ELAEIAGKALFDIEPENAANYVLLGKMYASVGRHEEAQRLRMEMKERRVKAVPGSSWVVY
Sbjct: 361 ELAEIAGKALFDIEPENAANYVLLGKMYASVGRHEEAQRLRMEMKERRVKAVPGSSWVVY 420

Query: 421 QD 423
           QD
Sbjct: 421 QD 422

[Close]

BLAST of CmoCh20G005890 vs. ExPASy TrEMBL
Match: A0A6J1J925 (putative pentatricopeptide repeat-containing protein At1g03510 OS=Cucurbita maxima OX=3661 GN=LOC111484567 PE=4 SV=1)

HSP 1 Score: 820.8 bits (2119), Expect = 2.5e-234
Identity = 411/422 (97.39%), Postives = 416/422 (98.58%), Query Frame = 0


Query: 1   MGSNYLRLLSYTKQLSFYANHGNHEQALALFHHMQASLALALDAHVFSLVLKSCTAIRRP 60
           MGSNYLRLLSYTKQLSFYANHGNHEQALALF HMQASLALALDAHVFSLVLKSCTAIRRP
Sbjct: 1   MGSNYLRLLSYTKQLSFYANHGNHEQALALFLHMQASLALALDAHVFSLVLKSCTAIRRP 60

Query: 61  HLGTAIHAHATKSSLLSSPFVACALVDMYGKSMSVPLARKLFDEIPHRTVVAWNAMLSLY 120
            LGTAIHAHATKSSLLS+PFVACALVDMYGKSMSVPLARKLFDEIP RTVVAWN MLSLY
Sbjct: 61  LLGTAIHAHATKSSLLSNPFVACALVDMYGKSMSVPLARKLFDEIPQRTVVAWNTMLSLY 120

Query: 121 THSNMLPDALRLFEAMDVPPNTSSFNPIIAGLLDDGFKAIAFYRKMQQCGLKPNLITLLA 180
           THSNMLPDALRLFEAMDVPPNTSSFNPIIAGLLDDGFKAI+FYRKMQQCGLKPNLITLLA
Sbjct: 121 THSNMLPDALRLFEAMDVPPNTSSFNPIIAGLLDDGFKAISFYRKMQQCGLKPNLITLLA 180

Query: 181 LLPASVGVAALDLIKQIHGFAMRNDLGCHPQLSSGLVEAYGRCGCLNYAHNVFDKMHERD 240
           LLPASVGVAALDLIKQIHGFAMRNDLGCHPQLSSGLVEAYGRCGCLNYAHNVFDKMHERD
Sbjct: 181 LLPASVGVAALDLIKQIHGFAMRNDLGCHPQLSSGLVEAYGRCGCLNYAHNVFDKMHERD 240

Query: 241 VVAWSSLISAYALHGEARTALNIFQQMELCKVQPDEITFIGVLKACSHVGLADEALDYFS 300
           VVAWSSLISA+ALHGEARTALNIFQQM LCKVQPDEITFIGVLKACS+VGLADEAL YFS
Sbjct: 241 VVAWSSLISAHALHGEARTALNIFQQMALCKVQPDEITFIGVLKACSYVGLADEALYYFS 300

Query: 301 RMQRDYGLQASSDHYSCLVDALSRAGRLHEAYEIIREMPVRVTAKAWGALLGACRNYGEL 360
           RMQRDYGLQASSDHYSCLVDALSRAGRLHEAYEIIREMPVRVTAKAWGALLGACRNYGEL
Sbjct: 301 RMQRDYGLQASSDHYSCLVDALSRAGRLHEAYEIIREMPVRVTAKAWGALLGACRNYGEL 360

Query: 361 ELAEIAGKALFDIEPENAANYVLLGKMYASVGRHEEAQRLRMEMKERRVKAVPGSSWVVY 420
           ELAEIAGKALFDIEPENAANYVLLGKMYASVGRHEEAQRLRMEMKERRV+AVPGSSWVVY
Sbjct: 361 ELAEIAGKALFDIEPENAANYVLLGKMYASVGRHEEAQRLRMEMKERRVQAVPGSSWVVY 420

Query: 421 QD 423
           QD
Sbjct: 421 QD 422

[Close]

BLAST of CmoCh20G005890 vs. ExPASy TrEMBL
Match: A0A0A0KE48 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124020 PE=4 SV=1)

HSP 1 Score: 760.4 bits (1962), Expect = 4.1e-216
Identity = 379/424 (89.39%), Postives = 399/424 (94.10%), Query Frame = 0


Query: 1   MGSNYLRLLSYTKQLSFYANHGNHEQALALFHHMQASLALALDAHVFSLVLKSCTAIRRP 60
           MGS+YLRLLSYTKQLSFYANHGNHEQ L+LFHHMQASLAL LDAHVFSLVLKSCTA+RRP
Sbjct: 1   MGSSYLRLLSYTKQLSFYANHGNHEQTLSLFHHMQASLALGLDAHVFSLVLKSCTALRRP 60

Query: 61  HLGTAIHAHATKSSLLSSPFVACALVDMYGKSMSVPLARKLFDEIPHRTVVAWNAMLSLY 120
           HLG AIHAH+ KSSLLSSPFVACALVDMYGKS+SV LARKLFDEIPHR+VV WN MLSLY
Sbjct: 61  HLGIAIHAHSAKSSLLSSPFVACALVDMYGKSLSVTLARKLFDEIPHRSVVVWNVMLSLY 120

Query: 121 THSNMLPDALRLFEAMDVPPNTSSFNPIIAGL--LDDGFKAIAFYRKMQQCGLKPNLITL 180
            H+NML  AL+LFEAMDVPPN SSFN I+AGL  L+DGFKAIAFYR+MQQCGLKPNLITL
Sbjct: 121 VHANMLFGALQLFEAMDVPPNASSFNAIVAGLSKLEDGFKAIAFYRQMQQCGLKPNLITL 180

Query: 181 LALLPASVGVAALDLIKQIHGFAMRNDLGCHPQLSSGLVEAYGRCGCLNYAHNVFDKMHE 240
           LALLPASVGVA+LDLIKQIHGFAMRND+G H QLSSGLVEAYGRCGCL+YAHNVFD M E
Sbjct: 181 LALLPASVGVASLDLIKQIHGFAMRNDIGAHLQLSSGLVEAYGRCGCLSYAHNVFDNMTE 240

Query: 241 RDVVAWSSLISAYALHGEARTALNIFQQMELCKVQPDEITFIGVLKACSHVGLADEALDY 300
           RDVVAWSSLISA+ALHGEA TALNIFQQME CKVQPDEITFIGVLKACSHVGLA+EALDY
Sbjct: 241 RDVVAWSSLISAHALHGEASTALNIFQQMESCKVQPDEITFIGVLKACSHVGLANEALDY 300

Query: 301 FSRMQRDYGLQASSDHYSCLVDALSRAGRLHEAYEIIREMPVRVTAKAWGALLGACRNYG 360
           F+RMQRDYGLQASSDHYSCLVD LSRAGRLHEAY+IIREMPVRVTAKAWGALLGACR YG
Sbjct: 301 FNRMQRDYGLQASSDHYSCLVDVLSRAGRLHEAYDIIREMPVRVTAKAWGALLGACRIYG 360

Query: 361 ELELAEIAGKALFDIEPENAANYVLLGKMYASVGRHEEAQRLRMEMKERRVKAVPGSSWV 420
           ELELAEIAGKALF+IEPENAANYVLL KMYASVGRHEEAQR+R EMKERRVK VPGSSWV
Sbjct: 361 ELELAEIAGKALFEIEPENAANYVLLAKMYASVGRHEEAQRMRREMKERRVKVVPGSSWV 420

Query: 421 VYQD 423
           VYQD
Sbjct: 421 VYQD 424

[Close]

BLAST of CmoCh20G005890 vs. ExPASy TrEMBL
Match: A0A1S4DX62 (putative pentatricopeptide repeat-containing protein At1g03510 OS=Cucumis melo OX=3656 GN=LOC103490472 PE=4 SV=1)

HSP 1 Score: 754.2 bits (1946), Expect = 2.9e-214
Identity = 377/424 (88.92%), Postives = 399/424 (94.10%), Query Frame = 0


Query: 1   MGSNYLRLLSYTKQLSFYANHGNHEQALALFHHMQASLALALDAHVFSLVLKSCTAIRRP 60
           MGS+YLRL+SY+KQLSFYA HG+HEQ L+LFHHMQASLALALDAHVFSLVLKSCTA+RRP
Sbjct: 1   MGSSYLRLVSYSKQLSFYAKHGSHEQTLSLFHHMQASLALALDAHVFSLVLKSCTALRRP 60

Query: 61  HLGTAIHAHATKSSLLSSPFVACALVDMYGKSMSVPLARKLFDEIPHRTVVAWNAMLSLY 120
           HLG AIHAH+ KSSLLSSPFVACALVDMYGKS+SV LARKLFDEIPHR+VV WN MLSLY
Sbjct: 61  HLGIAIHAHSAKSSLLSSPFVACALVDMYGKSLSVSLARKLFDEIPHRSVVVWNVMLSLY 120

Query: 121 THSNMLPDALRLFEAMDVPPNTSSFNPIIAGL--LDDGFKAIAFYRKMQQCGLKPNLITL 180
            HSNML  AL+LFEAMDVPPN SSFNPI+AGL  L+DGFKAIAFYR+MQQCGLKPNLITL
Sbjct: 121 VHSNMLFGALQLFEAMDVPPNASSFNPIVAGLSKLEDGFKAIAFYRQMQQCGLKPNLITL 180

Query: 181 LALLPASVGVAALDLIKQIHGFAMRNDLGCHPQLSSGLVEAYGRCGCLNYAHNVFDKMHE 240
           LALLPASVGVA+LDLIKQIHGFAMRND+G H QLSSGLVEAYGRCGCL+YAHNVFD M E
Sbjct: 181 LALLPASVGVASLDLIKQIHGFAMRNDIGGHLQLSSGLVEAYGRCGCLSYAHNVFDNMTE 240

Query: 241 RDVVAWSSLISAYALHGEARTALNIFQQMELCKVQPDEITFIGVLKACSHVGLADEALDY 300
           RDVVAWSSLISA+ALHGEA TALNIFQQMEL KVQPD ITFIGVLKACSHVGLADEALDY
Sbjct: 241 RDVVAWSSLISAHALHGEASTALNIFQQMELSKVQPDAITFIGVLKACSHVGLADEALDY 300

Query: 301 FSRMQRDYGLQASSDHYSCLVDALSRAGRLHEAYEIIREMPVRVTAKAWGALLGACRNYG 360
           F+RMQRDYGLQASSDHYSCLVD LSRAGRLHEA++IIREMPVRVTAKAWGALLGACR YG
Sbjct: 301 FNRMQRDYGLQASSDHYSCLVDVLSRAGRLHEAHDIIREMPVRVTAKAWGALLGACRIYG 360

Query: 361 ELELAEIAGKALFDIEPENAANYVLLGKMYASVGRHEEAQRLRMEMKERRVKAVPGSSWV 420
           ELELAEIAGKALF+IEPENAANYVLL KMYASVGRHEEAQR+R EMKERRVK VPGSSWV
Sbjct: 361 ELELAEIAGKALFEIEPENAANYVLLAKMYASVGRHEEAQRMRREMKERRVKVVPGSSWV 420

Query: 421 VYQD 423
           VYQD
Sbjct: 421 VYQD 424

[Close]

BLAST of CmoCh20G005890 vs. ExPASy TrEMBL
Match: A0A6J1CFE4 (putative pentatricopeptide repeat-containing protein At1g03510 OS=Momordica charantia OX=3673 GN=LOC111011197 PE=4 SV=1)

HSP 1 Score: 733.0 bits (1891), Expect = 6.9e-208
Identity = 369/422 (87.44%), Postives = 389/422 (92.18%), Query Frame = 0


Query: 3   SNYLRLLSYTKQLSFYANHGNHEQALALFHHMQASLALALDAHVFSLVLKSCTAIRRPHL 62
           SNYLRLLSYTKQL+FY NHGNHEQALALFHHMQASLAL LDAHVFSL LKSCTAI+RPHL
Sbjct: 6   SNYLRLLSYTKQLTFYVNHGNHEQALALFHHMQASLALGLDAHVFSLTLKSCTAIQRPHL 65

Query: 63  GTAIHAHATKSSLLSSPFVACALVDMYGKSMSVPLARKLFDEIPHRTVVAWNAMLSLYTH 122
           G AIHAHA KSSLLSSPFVA ALVDMYGK +SV LARKLFDEIP R+VV WNA+LSLY H
Sbjct: 66  GIAIHAHAAKSSLLSSPFVASALVDMYGKCISVSLARKLFDEIPQRSVVVWNAILSLYAH 125

Query: 123 SNMLPDALRLFEAMDVPPNTSSFNPIIAGL--LDDGFKAIAFYRKMQQCGLKPNLITLLA 182
           +NML DALRLFEAMDV PNTSSFN IIAGL  L+DGFKAIAFYRKMQQ GLKPNLI+LLA
Sbjct: 126 ANMLSDALRLFEAMDVQPNTSSFNSIIAGLSELEDGFKAIAFYRKMQQFGLKPNLISLLA 185

Query: 183 LLPASVGVAALDLIKQIHGFAMRNDLGCHPQLSSGLVEAYGRCGCLNYAHNVFDKMHERD 242
           LLPA VGVAALDLIKQIHGFAMR+D+  H QL SGLVEAYGRCGCL+YAHNVFD M ERD
Sbjct: 186 LLPACVGVAALDLIKQIHGFAMRSDISSHLQLGSGLVEAYGRCGCLSYAHNVFDSMKERD 245

Query: 243 VVAWSSLISAYALHGEARTALNIFQQMELCKVQPDEITFIGVLKACSHVGLADEALDYFS 302
           VVAWSSLISA+ALHGEARTALNIFQQMEL +V PDEITFIGVLKACSHVGLAD+ALDYFS
Sbjct: 246 VVAWSSLISAHALHGEARTALNIFQQMELAEVHPDEITFIGVLKACSHVGLADKALDYFS 305

Query: 303 RMQRDYGLQASSDHYSCLVDALSRAGRLHEAYEIIREMPVRVTAKAWGALLGACRNYGEL 362
           RMQRDYGL+ASSDHYSCLVD L RAGRLHEA++IIREMPVR TAKAWGALLGACR YGEL
Sbjct: 306 RMQRDYGLKASSDHYSCLVDVLGRAGRLHEAFDIIREMPVRATAKAWGALLGACRIYGEL 365

Query: 363 ELAEIAGKALFDIEPENAANYVLLGKMYASVGRHEEAQRLRMEMKERRVKAVPGSSWVVY 422
           ELAEIAGKALF+IEPENAANYVLL KM+ASVGRHEEAQR+R EMKERRVK VPGSSWVVY
Sbjct: 366 ELAEIAGKALFEIEPENAANYVLLAKMFASVGRHEEAQRMRREMKERRVKVVPGSSWVVY 425

[Close]

BLAST of CmoCh20G005890 vs. NCBI nr
Match: XP_022944604.1 (putative pentatricopeptide repeat-containing protein At1g03510 [Cucurbita moschata] >XP_022944605.1 putative pentatricopeptide repeat-containing protein At1g03510 [Cucurbita moschata])

HSP 1 Score: 847.8 bits (2189), Expect = 4.0e-242
Identity = 422/422 (100.00%), Postives = 422/422 (100.00%), Query Frame = 0


Query: 1   MGSNYLRLLSYTKQLSFYANHGNHEQALALFHHMQASLALALDAHVFSLVLKSCTAIRRP 60
           MGSNYLRLLSYTKQLSFYANHGNHEQALALFHHMQASLALALDAHVFSLVLKSCTAIRRP
Sbjct: 1   MGSNYLRLLSYTKQLSFYANHGNHEQALALFHHMQASLALALDAHVFSLVLKSCTAIRRP 60

Query: 61  HLGTAIHAHATKSSLLSSPFVACALVDMYGKSMSVPLARKLFDEIPHRTVVAWNAMLSLY 120
           HLGTAIHAHATKSSLLSSPFVACALVDMYGKSMSVPLARKLFDEIPHRTVVAWNAMLSLY
Sbjct: 61  HLGTAIHAHATKSSLLSSPFVACALVDMYGKSMSVPLARKLFDEIPHRTVVAWNAMLSLY 120

Query: 121 THSNMLPDALRLFEAMDVPPNTSSFNPIIAGLLDDGFKAIAFYRKMQQCGLKPNLITLLA 180
           THSNMLPDALRLFEAMDVPPNTSSFNPIIAGLLDDGFKAIAFYRKMQQCGLKPNLITLLA
Sbjct: 121 THSNMLPDALRLFEAMDVPPNTSSFNPIIAGLLDDGFKAIAFYRKMQQCGLKPNLITLLA 180

Query: 181 LLPASVGVAALDLIKQIHGFAMRNDLGCHPQLSSGLVEAYGRCGCLNYAHNVFDKMHERD 240
           LLPASVGVAALDLIKQIHGFAMRNDLGCHPQLSSGLVEAYGRCGCLNYAHNVFDKMHERD
Sbjct: 181 LLPASVGVAALDLIKQIHGFAMRNDLGCHPQLSSGLVEAYGRCGCLNYAHNVFDKMHERD 240

Query: 241 VVAWSSLISAYALHGEARTALNIFQQMELCKVQPDEITFIGVLKACSHVGLADEALDYFS 300
           VVAWSSLISAYALHGEARTALNIFQQMELCKVQPDEITFIGVLKACSHVGLADEALDYFS
Sbjct: 241 VVAWSSLISAYALHGEARTALNIFQQMELCKVQPDEITFIGVLKACSHVGLADEALDYFS 300

Query: 301 RMQRDYGLQASSDHYSCLVDALSRAGRLHEAYEIIREMPVRVTAKAWGALLGACRNYGEL 360
           RMQRDYGLQASSDHYSCLVDALSRAGRLHEAYEIIREMPVRVTAKAWGALLGACRNYGEL
Sbjct: 301 RMQRDYGLQASSDHYSCLVDALSRAGRLHEAYEIIREMPVRVTAKAWGALLGACRNYGEL 360

Query: 361 ELAEIAGKALFDIEPENAANYVLLGKMYASVGRHEEAQRLRMEMKERRVKAVPGSSWVVY 420
           ELAEIAGKALFDIEPENAANYVLLGKMYASVGRHEEAQRLRMEMKERRVKAVPGSSWVVY
Sbjct: 361 ELAEIAGKALFDIEPENAANYVLLGKMYASVGRHEEAQRLRMEMKERRVKAVPGSSWVVY 420

Query: 421 QD 423
           QD
Sbjct: 421 QD 422

[Close]

BLAST of CmoCh20G005890 vs. NCBI nr
Match: XP_023512037.1 (putative pentatricopeptide repeat-containing protein At1g03510 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 838.2 bits (2164), Expect = 3.2e-239
Identity = 419/422 (99.29%), Postives = 419/422 (99.29%), Query Frame = 0


Query: 1   MGSNYLRLLSYTKQLSFYANHGNHEQALALFHHMQASLALALDAHVFSLVLKSCTAIRRP 60
           MGSNYLRLLSYTKQLSFYANHGNHEQAL LFHHMQASLALALDAHVFSLVLKSCTAIRRP
Sbjct: 1   MGSNYLRLLSYTKQLSFYANHGNHEQALTLFHHMQASLALALDAHVFSLVLKSCTAIRRP 60

Query: 61  HLGTAIHAHATKSSLLSSPFVACALVDMYGKSMSVPLARKLFDEIPHRTVVAWNAMLSLY 120
           HLGTAIHAHATKSSLLSSPFVACALVDMYGKSMSV LARKLFDEIPHRTVVAWNAMLSLY
Sbjct: 61  HLGTAIHAHATKSSLLSSPFVACALVDMYGKSMSVSLARKLFDEIPHRTVVAWNAMLSLY 120

Query: 121 THSNMLPDALRLFEAMDVPPNTSSFNPIIAGLLDDGFKAIAFYRKMQQCGLKPNLITLLA 180
           THSNMLPDALRLFEAMDVPPNTSSFNPIIAGLLDDGFKAIAFYRKMQQCGLKPNLITLLA
Sbjct: 121 THSNMLPDALRLFEAMDVPPNTSSFNPIIAGLLDDGFKAIAFYRKMQQCGLKPNLITLLA 180

Query: 181 LLPASVGVAALDLIKQIHGFAMRNDLGCHPQLSSGLVEAYGRCGCLNYAHNVFDKMHERD 240
           LLPASVGVAALDLIKQIHGFAMRNDLGCHPQLSSGLVEAYGRCGCLNYAHNVFDKMHERD
Sbjct: 181 LLPASVGVAALDLIKQIHGFAMRNDLGCHPQLSSGLVEAYGRCGCLNYAHNVFDKMHERD 240

Query: 241 VVAWSSLISAYALHGEARTALNIFQQMELCKVQPDEITFIGVLKACSHVGLADEALDYFS 300
           VVA SSLISAYALHGEARTALNIFQQMELCKVQPDEITFIGVLKACSHVGLADEALDYFS
Sbjct: 241 VVACSSLISAYALHGEARTALNIFQQMELCKVQPDEITFIGVLKACSHVGLADEALDYFS 300

Query: 301 RMQRDYGLQASSDHYSCLVDALSRAGRLHEAYEIIREMPVRVTAKAWGALLGACRNYGEL 360
           RMQRDYGLQASSDHYSCLVDALSRAGRLHEAYEIIREMPVRVTAKAWGALLGACRNYGEL
Sbjct: 301 RMQRDYGLQASSDHYSCLVDALSRAGRLHEAYEIIREMPVRVTAKAWGALLGACRNYGEL 360

Query: 361 ELAEIAGKALFDIEPENAANYVLLGKMYASVGRHEEAQRLRMEMKERRVKAVPGSSWVVY 420
           ELAEIAGKALFDIEPENAANYVLLGKMYASVGRHEEAQRLRMEMKERRVKAVPGSSWVVY
Sbjct: 361 ELAEIAGKALFDIEPENAANYVLLGKMYASVGRHEEAQRLRMEMKERRVKAVPGSSWVVY 420

Query: 421 QD 423
           QD
Sbjct: 421 QD 422

[Close]

BLAST of CmoCh20G005890 vs. NCBI nr
Match: KAG6570852.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 838.2 bits (2164), Expect = 3.2e-239
Identity = 418/422 (99.05%), Postives = 419/422 (99.29%), Query Frame = 0


Query: 1   MGSNYLRLLSYTKQLSFYANHGNHEQALALFHHMQASLALALDAHVFSLVLKSCTAIRRP 60
           MGSNYLRLLSYTKQLSFYANHGNHEQALALFHHMQASLALALDAHVFSLVLKSCTAIRRP
Sbjct: 1   MGSNYLRLLSYTKQLSFYANHGNHEQALALFHHMQASLALALDAHVFSLVLKSCTAIRRP 60

Query: 61  HLGTAIHAHATKSSLLSSPFVACALVDMYGKSMSVPLARKLFDEIPHRTVVAWNAMLSLY 120
            LGTAIHAHATKSSLLSSPFVACALVDMYGKSMSV LARKLFDEIPHRTVVAWNAMLSLY
Sbjct: 61  QLGTAIHAHATKSSLLSSPFVACALVDMYGKSMSVSLARKLFDEIPHRTVVAWNAMLSLY 120

Query: 121 THSNMLPDALRLFEAMDVPPNTSSFNPIIAGLLDDGFKAIAFYRKMQQCGLKPNLITLLA 180
           THSNMLPDALRLFEAMDVPPNTSSFNPIIAGLLDDGFKAIAFYRKMQQCGLKPNLITLLA
Sbjct: 121 THSNMLPDALRLFEAMDVPPNTSSFNPIIAGLLDDGFKAIAFYRKMQQCGLKPNLITLLA 180

Query: 181 LLPASVGVAALDLIKQIHGFAMRNDLGCHPQLSSGLVEAYGRCGCLNYAHNVFDKMHERD 240
           LLPASVGVAALDLIKQIHGFAMRNDLGCHPQL SGLVEAYGRCGCLNYAHNVFDKMHERD
Sbjct: 181 LLPASVGVAALDLIKQIHGFAMRNDLGCHPQLGSGLVEAYGRCGCLNYAHNVFDKMHERD 240

Query: 241 VVAWSSLISAYALHGEARTALNIFQQMELCKVQPDEITFIGVLKACSHVGLADEALDYFS 300
           VVAWSSLISA+ALHGEARTALNIFQQMELCKVQPDEITFIGVLKACSHVGLADEALDYFS
Sbjct: 241 VVAWSSLISAHALHGEARTALNIFQQMELCKVQPDEITFIGVLKACSHVGLADEALDYFS 300

Query: 301 RMQRDYGLQASSDHYSCLVDALSRAGRLHEAYEIIREMPVRVTAKAWGALLGACRNYGEL 360
           RMQRDYGLQASSDHYSCLVDALSRAGRLHEAYEIIREMPVRVTAKAWGALLGACRNYGEL
Sbjct: 301 RMQRDYGLQASSDHYSCLVDALSRAGRLHEAYEIIREMPVRVTAKAWGALLGACRNYGEL 360

Query: 361 ELAEIAGKALFDIEPENAANYVLLGKMYASVGRHEEAQRLRMEMKERRVKAVPGSSWVVY 420
           ELAEIAGKALFDIEPENAANYVLLGKMYASVGRHEEAQRLRMEMKERRVKAVPGSSWVVY
Sbjct: 361 ELAEIAGKALFDIEPENAANYVLLGKMYASVGRHEEAQRLRMEMKERRVKAVPGSSWVVY 420

Query: 421 QD 423
           QD
Sbjct: 421 QD 422

[Close]

BLAST of CmoCh20G005890 vs. NCBI nr
Match: XP_022986977.1 (putative pentatricopeptide repeat-containing protein At1g03510 [Cucurbita maxima])

HSP 1 Score: 820.8 bits (2119), Expect = 5.2e-234
Identity = 411/422 (97.39%), Postives = 416/422 (98.58%), Query Frame = 0


Query: 1   MGSNYLRLLSYTKQLSFYANHGNHEQALALFHHMQASLALALDAHVFSLVLKSCTAIRRP 60
           MGSNYLRLLSYTKQLSFYANHGNHEQALALF HMQASLALALDAHVFSLVLKSCTAIRRP
Sbjct: 1   MGSNYLRLLSYTKQLSFYANHGNHEQALALFLHMQASLALALDAHVFSLVLKSCTAIRRP 60

Query: 61  HLGTAIHAHATKSSLLSSPFVACALVDMYGKSMSVPLARKLFDEIPHRTVVAWNAMLSLY 120
            LGTAIHAHATKSSLLS+PFVACALVDMYGKSMSVPLARKLFDEIP RTVVAWN MLSLY
Sbjct: 61  LLGTAIHAHATKSSLLSNPFVACALVDMYGKSMSVPLARKLFDEIPQRTVVAWNTMLSLY 120

Query: 121 THSNMLPDALRLFEAMDVPPNTSSFNPIIAGLLDDGFKAIAFYRKMQQCGLKPNLITLLA 180
           THSNMLPDALRLFEAMDVPPNTSSFNPIIAGLLDDGFKAI+FYRKMQQCGLKPNLITLLA
Sbjct: 121 THSNMLPDALRLFEAMDVPPNTSSFNPIIAGLLDDGFKAISFYRKMQQCGLKPNLITLLA 180

Query: 181 LLPASVGVAALDLIKQIHGFAMRNDLGCHPQLSSGLVEAYGRCGCLNYAHNVFDKMHERD 240
           LLPASVGVAALDLIKQIHGFAMRNDLGCHPQLSSGLVEAYGRCGCLNYAHNVFDKMHERD
Sbjct: 181 LLPASVGVAALDLIKQIHGFAMRNDLGCHPQLSSGLVEAYGRCGCLNYAHNVFDKMHERD 240

Query: 241 VVAWSSLISAYALHGEARTALNIFQQMELCKVQPDEITFIGVLKACSHVGLADEALDYFS 300
           VVAWSSLISA+ALHGEARTALNIFQQM LCKVQPDEITFIGVLKACS+VGLADEAL YFS
Sbjct: 241 VVAWSSLISAHALHGEARTALNIFQQMALCKVQPDEITFIGVLKACSYVGLADEALYYFS 300

Query: 301 RMQRDYGLQASSDHYSCLVDALSRAGRLHEAYEIIREMPVRVTAKAWGALLGACRNYGEL 360
           RMQRDYGLQASSDHYSCLVDALSRAGRLHEAYEIIREMPVRVTAKAWGALLGACRNYGEL
Sbjct: 301 RMQRDYGLQASSDHYSCLVDALSRAGRLHEAYEIIREMPVRVTAKAWGALLGACRNYGEL 360

Query: 361 ELAEIAGKALFDIEPENAANYVLLGKMYASVGRHEEAQRLRMEMKERRVKAVPGSSWVVY 420
           ELAEIAGKALFDIEPENAANYVLLGKMYASVGRHEEAQRLRMEMKERRV+AVPGSSWVVY
Sbjct: 361 ELAEIAGKALFDIEPENAANYVLLGKMYASVGRHEEAQRLRMEMKERRVQAVPGSSWVVY 420

Query: 421 QD 423
           QD
Sbjct: 421 QD 422

[Close]

BLAST of CmoCh20G005890 vs. NCBI nr
Match: XP_031743918.1 (putative pentatricopeptide repeat-containing protein At1g03510 [Cucumis sativus] >XP_031743919.1 putative pentatricopeptide repeat-containing protein At1g03510 [Cucumis sativus] >XP_031743920.1 putative pentatricopeptide repeat-containing protein At1g03510 [Cucumis sativus] >XP_031743921.1 putative pentatricopeptide repeat-containing protein At1g03510 [Cucumis sativus] >KGN46687.1 hypothetical protein Csa_020798 [Cucumis sativus])

HSP 1 Score: 760.4 bits (1962), Expect = 8.4e-216
Identity = 379/424 (89.39%), Postives = 399/424 (94.10%), Query Frame = 0


Query: 1   MGSNYLRLLSYTKQLSFYANHGNHEQALALFHHMQASLALALDAHVFSLVLKSCTAIRRP 60
           MGS+YLRLLSYTKQLSFYANHGNHEQ L+LFHHMQASLAL LDAHVFSLVLKSCTA+RRP
Sbjct: 1   MGSSYLRLLSYTKQLSFYANHGNHEQTLSLFHHMQASLALGLDAHVFSLVLKSCTALRRP 60

Query: 61  HLGTAIHAHATKSSLLSSPFVACALVDMYGKSMSVPLARKLFDEIPHRTVVAWNAMLSLY 120
           HLG AIHAH+ KSSLLSSPFVACALVDMYGKS+SV LARKLFDEIPHR+VV WN MLSLY
Sbjct: 61  HLGIAIHAHSAKSSLLSSPFVACALVDMYGKSLSVTLARKLFDEIPHRSVVVWNVMLSLY 120

Query: 121 THSNMLPDALRLFEAMDVPPNTSSFNPIIAGL--LDDGFKAIAFYRKMQQCGLKPNLITL 180
            H+NML  AL+LFEAMDVPPN SSFN I+AGL  L+DGFKAIAFYR+MQQCGLKPNLITL
Sbjct: 121 VHANMLFGALQLFEAMDVPPNASSFNAIVAGLSKLEDGFKAIAFYRQMQQCGLKPNLITL 180

Query: 181 LALLPASVGVAALDLIKQIHGFAMRNDLGCHPQLSSGLVEAYGRCGCLNYAHNVFDKMHE 240
           LALLPASVGVA+LDLIKQIHGFAMRND+G H QLSSGLVEAYGRCGCL+YAHNVFD M E
Sbjct: 181 LALLPASVGVASLDLIKQIHGFAMRNDIGAHLQLSSGLVEAYGRCGCLSYAHNVFDNMTE 240

Query: 241 RDVVAWSSLISAYALHGEARTALNIFQQMELCKVQPDEITFIGVLKACSHVGLADEALDY 300
           RDVVAWSSLISA+ALHGEA TALNIFQQME CKVQPDEITFIGVLKACSHVGLA+EALDY
Sbjct: 241 RDVVAWSSLISAHALHGEASTALNIFQQMESCKVQPDEITFIGVLKACSHVGLANEALDY 300

Query: 301 FSRMQRDYGLQASSDHYSCLVDALSRAGRLHEAYEIIREMPVRVTAKAWGALLGACRNYG 360
           F+RMQRDYGLQASSDHYSCLVD LSRAGRLHEAY+IIREMPVRVTAKAWGALLGACR YG
Sbjct: 301 FNRMQRDYGLQASSDHYSCLVDVLSRAGRLHEAYDIIREMPVRVTAKAWGALLGACRIYG 360

Query: 361 ELELAEIAGKALFDIEPENAANYVLLGKMYASVGRHEEAQRLRMEMKERRVKAVPGSSWV 420
           ELELAEIAGKALF+IEPENAANYVLL KMYASVGRHEEAQR+R EMKERRVK VPGSSWV
Sbjct: 361 ELELAEIAGKALFEIEPENAANYVLLAKMYASVGRHEEAQRMRREMKERRVKVVPGSSWV 420

Query: 421 VYQD 423
           VYQD
Sbjct: 421 VYQD 424

[Close]

BLAST of CmoCh20G005890 vs. TAIR 10
Match: AT1G03510.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 550.8 bits (1418), Expect = 9.4e-157
Identity = 277/423 (65.48%), Postives = 324/423 (76.60%), Query Frame = 0


Query: 3   SNYLRLLSYTKQLSFYANHGNHEQALALFHHMQASLALALDAHVFSLVLKSCTAIRRPHL 62
           S+  +L+S TKQLS YAN GNHEQAL LF  M +S AL LDAHVFSL LKSC A  RP L
Sbjct: 7   SSCTKLISLTKQLSSYANQGNHEQALNLFLQMHSSFALPLDAHVFSLALKSCAAAFRPVL 66

Query: 63  GTAIHAHATKSSLLSSPFVACALVDMYGKSMSVPLARKLFDEIPHRTVVAWNAMLSLYTH 122
           G ++HAH+ KS+ LS+PFV CAL+DMYGK +SV  ARKLFDEIP R  V WNAM+S YTH
Sbjct: 67  GGSVHAHSVKSNFLSNPFVGCALLDMYGKCLSVSHARKLFDEIPQRNAVVWNAMISHYTH 126

Query: 123 SNMLPDALRLFEAMDVPPNTSSFNPIIAGLL---DDGFKAIAFYRKMQQCGLKPNLITLL 182
              + +A+ L+EAMDV PN SSFN II GL+   D  ++AI FYRKM +   KPNLITLL
Sbjct: 127 CGKVKEAVELYEAMDVMPNESSFNAIIKGLVGTEDGSYRAIEFYRKMIEFRFKPNLITLL 186

Query: 183 ALLPASVGVAALDLIKQIHGFAMRNDLGCHPQLSSGLVEAYGRCGCLNYAHNVFDKMHER 242
           AL+ A   + A  LIK+IH +A RN +  HPQL SGLVEAYGRCG + Y   VFD M +R
Sbjct: 187 ALVSACSAIGAFRLIKEIHSYAFRNLIEPHPQLKSGLVEAYGRCGSIVYVQLVFDSMEDR 246

Query: 243 DVVAWSSLISAYALHGEARTALNIFQQMELCKVQPDEITFIGVLKACSHVGLADEALDYF 302
           DVVAWSSLISAYALHG+A +AL  FQ+MEL KV PD+I F+ VLKACSH GLADEAL YF
Sbjct: 247 DVVAWSSLISAYALHGDAESALKTFQEMELAKVTPDDIAFLNVLKACSHAGLADEALVYF 306

Query: 303 SRMQRDYGLQASSDHYSCLVDALSRAGRLHEAYEIIREMPVRVTAKAWGALLGACRNYGE 362
            RMQ DYGL+AS DHYSCLVD LSR GR  EAY++I+ MP + TAK WGALLGACRNYGE
Sbjct: 307 KRMQGDYGLRASKDHYSCLVDVLSRVGRFEEAYKVIQAMPEKPTAKTWGALLGACRNYGE 366

Query: 363 LELAEIAGKALFDIEPENAANYVLLGKMYASVGRHEEAQRLRMEMKERRVKAVPGSSWVV 422
           +ELAEIA + L  +EPEN ANYVLLGK+Y SVGR EEA+RLR++MKE  VK  PGSSW +
Sbjct: 367 IELAEIAARELLMVEPENPANYVLLGKIYMSVGRQEEAERLRLKMKESGVKVSPGSSWCL 426

[Close]

BLAST of CmoCh20G005890 vs. TAIR 10
Match: AT2G20540.1 (mitochondrial editing factor 21 )

HSP 1 Score: 284.3 bits (726), Expect = 1.6e-76
Identity = 143/378 (37.83%), Postives = 226/378 (59.79%), Query Frame = 0


Query: 43  DAHVFSLVLKSCTAIRRPHLGTAIHAHATKSSLLSSPFVACALVDMYGKSMSVPLARKLF 102
           D   F  + KSC ++   +LG  +H H  K           AL+DMY K   +  A K+F
Sbjct: 108 DRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVF 167

Query: 103 DEIPHRTVVAWNAMLSLYTHSNMLPDALRLFEAMDVPPNTSSFNPIIAGLLDDG--FKAI 162
           DE+  R V++WN++LS Y     +  A  LF  M +     S+  +I+G    G   +A+
Sbjct: 168 DEMYERDVISWNSLLSGYARLGQMKKAKGLFHLM-LDKTIVSWTAMISGYTGIGCYVEAM 227

Query: 163 AFYRKMQQCGLKPNLITLLALLPASVGVAALDLIKQIHGFAMRNDLGCHPQLSSGLVEAY 222
            F+R+MQ  G++P+ I+L+++LP+   + +L+L K IH +A R        + + L+E Y
Sbjct: 228 DFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMY 287

Query: 223 GRCGCLNYAHNVFDKMHERDVVAWSSLISAYALHGEARTALNIFQQMELCKVQPDEITFI 282
            +CG ++ A  +F +M  +DV++WS++IS YA HG A  A+  F +M+  KV+P+ ITF+
Sbjct: 288 SKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFL 347

Query: 283 GVLKACSHVGLADEALDYFSRMQRDYGLQASSDHYSCLVDALSRAGRLHEAYEIIREMPV 342
           G+L ACSHVG+  E L YF  M++DY ++   +HY CL+D L+RAG+L  A EI + MP+
Sbjct: 348 GLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPM 407

Query: 343 RVTAKAWGALLGACRNYGELELAEIAGKALFDIEPENAANYVLLGKMYASVGRHEEAQRL 402
           +  +K WG+LL +CR  G L++A +A   L ++EPE+  NYVLL  +YA +G+ E+  RL
Sbjct: 408 KPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRL 467

Query: 403 RMEMKERRVKAVPGSSWV 419
           R  ++   +K  PG S +
Sbjct: 468 RKMIRNENMKKTPGGSLI 484

[Close]

BLAST of CmoCh20G005890 vs. TAIR 10
Match: AT1G20230.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 276.9 bits (707), Expect = 2.6e-74
Identity = 149/416 (35.82%), Postives = 238/416 (57.21%), Query Frame = 0


Query: 8   LLSYTKQLSFYANHGNHEQALALFHHMQASLALALDAHVFSLVLKSCTAIRRPHLGTAIH 67
           ++S+   LS +   G H++A+ +F  +   L    D    S VL S       ++G  IH
Sbjct: 217 IVSWNGILSGFNRSGYHKEAVVMFQKIH-HLGFCPDQVTVSSVLPSVGDSEMLNMGRLIH 276

Query: 68  AHATKSSLLSSPFVACALVDMYGKSMSVPLARKLFDEIPHRTVVAWNAMLSLYTHSNMLP 127
            +  K  LL    V  A++DMYGKS  V     LF++         NA ++  + + ++ 
Sbjct: 277 GYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVD 336

Query: 128 DALRLFE---AMDVPPNTSSFNPIIAGLLDDG--FKAIAFYRKMQQCGLKPNLITLLALL 187
            AL +FE      +  N  S+  IIAG   +G   +A+  +R+MQ  G+KPN +T+ ++L
Sbjct: 337 KALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSML 396

Query: 188 PASVGVAALDLIKQIHGFAMRNDLGCHPQLSSGLVEAYGRCGCLNYAHNVFDKMHERDVV 247
           PA   +AAL   +  HGFA+R  L  +  + S L++ Y +CG +N +  VF+ M  +++V
Sbjct: 397 PACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLV 456

Query: 248 AWSSLISAYALHGEARTALNIFQQMELCKVQPDEITFIGVLKACSHVGLADEALDYFSRM 307
            W+SL++ +++HG+A+  ++IF+ +   +++PD I+F  +L AC  VGL DE   YF  M
Sbjct: 457 CWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMM 516

Query: 308 QRDYGLQASSDHYSCLVDALSRAGRLHEAYEIIREMPVRVTAKAWGALLGACRNYGELEL 367
             +YG++   +HYSC+V+ L RAG+L EAY++I+EMP    +  WGALL +CR    ++L
Sbjct: 517 SEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDL 576

Query: 368 AEIAGKALFDIEPENAANYVLLGKMYASVGRHEEAQRLRMEMKERRVKAVPGSSWV 419
           AEIA + LF +EPEN   YVLL  +YA+ G   E   +R +M+   +K  PG SW+
Sbjct: 577 AEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWI 631

[Close]

BLAST of CmoCh20G005890 vs. TAIR 10
Match: AT3G57430.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 271.9 bits (694), Expect = 8.4e-73
Identity = 146/413 (35.35%), Postives = 231/413 (55.93%), Query Frame = 0


Query: 11  YTKQLSFYANHGNHEQALALFHHMQASLALALDAHVFSLVLKSCTAIRRPHLGTAIHAHA 70
           +   ++ Y+ + + ++AL LF  M+ S  L  ++   + V+ +C          AIH   
Sbjct: 372 WNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFV 431

Query: 71  TKSSLLSSPFVACALVDMYGKSMSVPLARKLFDEIPHRTVVAWNAMLSLYTHSNMLPDAL 130
            K  L    FV   L+DMY +   + +A ++F ++  R +V WN M++ Y  S    DAL
Sbjct: 432 VKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDAL 491

Query: 131 RLFEAMDVPPNTSSFNPIIAGLLDDGFKAIAFYRKMQQCGLKPNLITLLALLPASVGVAA 190
            L   M       S                   +   +  LKPN ITL+ +LP+   ++A
Sbjct: 492 LLLHKMQNLERKVS-------------------KGASRVSLKPNSITLMTILPSCAALSA 551

Query: 191 LDLIKQIHGFAMRNDLGCHPQLSSGLVEAYGRCGCLNYAHNVFDKMHERDVVAWSSLISA 250
           L   K+IH +A++N+L     + S LV+ Y +CGCL  +  VFD++ +++V+ W+ +I A
Sbjct: 552 LAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMA 611

Query: 251 YALHGEARTALNIFQQMELCKVQPDEITFIGVLKACSHVGLADEALDYFSRMQRDYGLQA 310
           Y +HG  + A+++ + M +  V+P+E+TFI V  ACSH G+ DE L  F  M+ DYG++ 
Sbjct: 612 YGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEP 671

Query: 311 SSDHYSCLVDALSRAGRLHEAYEIIREMPVRVT-AKAWGALLGACRNYGELELAEIAGKA 370
           SSDHY+C+VD L RAGR+ EAY+++  MP     A AW +LLGA R +  LE+ EIA + 
Sbjct: 672 SSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQN 731

Query: 371 LFDIEPENAANYVLLGKMYASVGRHEEAQRLRMEMKERRVKAVPGSSWVVYQD 423
           L  +EP  A++YVLL  +Y+S G  ++A  +R  MKE+ V+  PG SW+ + D
Sbjct: 732 LIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGD 765

[Close]

BLAST of CmoCh20G005890 vs. TAIR 10
Match: AT3G46790.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 270.4 bits (690), Expect = 2.4e-72
Identity = 148/401 (36.91%), Postives = 221/401 (55.11%), Query Frame = 0


Query: 22  GNHEQALALFHHMQASLALALDAHVFSLVLKSCTA----IRRPHLGTAIHAHATKSSLLS 81
           G+ E+ L L+  M   + +  D   ++ VLK+C A    +     G  IHAH T+    S
Sbjct: 157 GHGEEVLGLYWKMN-RIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSS 216

Query: 82  SPFVACALVDMYGKSMSVPLARKLFDEIPHRTVVAWNAMLSLYTHSNMLPDALRLFEAMD 141
             ++   LVDMY +   V  A  +F  +P R VV+W+AM++ Y  +    +ALR F  M 
Sbjct: 217 HVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMM 276

Query: 142 VPPNTSSFNPIIAGLLDDGFKAIAFYRKMQQCGLKPNLITLLALLPASVGVAALDLIKQI 201
                SS                            PN +T++++L A   +AAL+  K I
Sbjct: 277 RETKDSS----------------------------PNSVTMVSVLQACASLAALEQGKLI 336

Query: 202 HGFAMRNDLGCHPQLSSGLVEAYGRCGCLNYAHNVFDKMHERDVVAWSSLISAYALHGEA 261
           HG+ +R  L     + S LV  YGRCG L     VFD+MH+RDVV+W+SLIS+Y +HG  
Sbjct: 337 HGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYG 396

Query: 262 RTALNIFQQMELCKVQPDEITFIGVLKACSHVGLADEALDYFSRMQRDYGLQASSDHYSC 321
           + A+ IF++M      P  +TF+ VL ACSH GL +E    F  M RD+G++   +HY+C
Sbjct: 397 KKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYAC 456

Query: 322 LVDALSRAGRLHEAYEIIREMPVRVTAKAWGALLGACRNYGELELAEIAGKALFDIEPEN 381
           +VD L RA RL EA +++++M      K WG+LLG+CR +G +ELAE A + LF +EP+N
Sbjct: 457 MVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKN 516

Query: 382 AANYVLLGKMYASVGRHEEAQRLRMEMKERRVKAVPGSSWV 419
           A NYVLL  +YA     +E +R++  ++ R ++ +PG  W+
Sbjct: 517 AGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWM 528

The following BLAST results are available for this feature:

BLAST of CmoCh20G005890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LR72	1.3e-155	65.48	Putative pentatricopeptide repeat-containing protein At1g03510 OS=Arabidopsis th...	[more]
Q9SIL5	2.3e-75	37.83	Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana OX...	[more]
Q9LNU6	3.7e-73	35.82	Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana OX...	[more]
Q7Y211	1.2e-71	35.35	Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidop...	[more]
Q9STF3	3.4e-71	36.91	Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidop...	[more]

BLAST of CmoCh20G005890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FYR9	1.9e-242	100.00	putative pentatricopeptide repeat-containing protein At1g03510 OS=Cucurbita mosc...	[more]
A0A6J1J925	2.5e-234	97.39	putative pentatricopeptide repeat-containing protein At1g03510 OS=Cucurbita maxi...	[more]
A0A0A0KE48	4.1e-216	89.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124020 PE=4 SV=1	[more]
A0A1S4DX62	2.9e-214	88.92	putative pentatricopeptide repeat-containing protein At1g03510 OS=Cucumis melo O...	[more]
A0A6J1CFE4	6.9e-208	87.44	putative pentatricopeptide repeat-containing protein At1g03510 OS=Momordica char...	[more]

BLAST of CmoCh20G005890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022944604.1	4.0e-242	100.00	putative pentatricopeptide repeat-containing protein At1g03510 [Cucurbita moscha...	[more]
XP_023512037.1	3.2e-239	99.29	putative pentatricopeptide repeat-containing protein At1g03510 [Cucurbita pepo s...	[more]
KAG6570852.1	3.2e-239	99.05	putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros...	[more]
XP_022986977.1	5.2e-234	97.39	putative pentatricopeptide repeat-containing protein At1g03510 [Cucurbita maxima...	[more]
XP_031743918.1	8.4e-216	89.39	putative pentatricopeptide repeat-containing protein At1g03510 [Cucumis sativus]...	[more]

BLAST of CmoCh20G005890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03510.1	9.4e-157	65.48	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G20540.1	1.6e-76	37.83	mitochondrial editing factor 21	[more]
AT1G20230.1	2.6e-74	35.82	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G57430.1	8.4e-73	35.35	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G46790.1	2.4e-72	36.91	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 239..287 e-value: 2.1E-8 score: 34.2
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 308..338 e-value: 1.6E-5 score: 24.6
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 242..276 e-value: 1.7E-5 score: 22.7 coord: 315..338 e-value: 1.6E-4 score: 19.7 coord: 216..242 e-value: 0.003 score: 15.6
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 17..35 e-value: 0.54 score: 10.6 coord: 386..408 e-value: 0.14 score: 12.4 coord: 111..136 e-value: 8.0E-4 score: 19.5
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 311..341 score: 9.076014
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 240..274 score: 10.676364
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 9..214 e-value: 1.7E-25 score: 92.1
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 215..372 e-value: 1.5E-38 score: 134.9
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 288..397
None	No IPR available	PANTHER	PTHR24015:SF858	OS03G0852000 PROTEIN	coord: 5..420
None	No IPR available	PANTHER	PTHR24015	OS07G0578800 PROTEIN-RELATED	coord: 5..420

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G005890.1	CmoCh20G005890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding