CmoCh20G005140 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh20G005140
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	DNA polymerase epsilon subunit C
Location	Cmo_Chr20: 2458626 .. 2461596 (-)
RNA-Seq Expression	CmoCh20G005140
Synteny	CmoCh20G005140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCCCCGGGAGCTGGGGAAGTGAAAGTCGCTAAAATCGGCCGAGCGCAGTAAATAGAGTCCCAGATGCAGGCCAGATAGAGCATCAATTCTTCAGTGCGAGCACGCTGTATGTTCTATACCGAGTACTCAGTAAATTATAGACCACTGCAAATCTGCGGGGAAGAAGGCGCAAATCCTTCTTTCATTTGTTGAGTCAAAAGGACATTAAAATCCCCCCTCATCTAAGGACGATGACTTGCCAGTGTGTAGGTTCTTGGTGAAAAAGGACCCGTAGTTCCCCCAAATTCTCAAACACCGATCTTTAACCATGGCTTCGTCCAAAAAATCCAGTAGTGAAGCCAAGAGCAAAGAAGCGGGAACTTCAAAACCAGCCCCCAACAACAAGACCCACAACAACAACGCCAGAACAATCGACAAGGTTTATTCAAAGAAGAAGAAGGTTAGCAACAGCAACAAGCACACTAGCAATGGCTCTGTGAAGGAGAACGAGGTGTTACCCATTTCTGCTCCAGGCGATGCCGAAGAAGACAGAGCAGAAACCACGAGTAAATCGCCTAACACCTCCAAATCGAAGAAAGTTAAACGGAACCGTGGAAAGAAAGAACAGAATGGTTATGTAGAAGAAGAAGAAGAAGCAGAAGAAGAAGCTGAGGAGAAGATTTACAAATTCCCTATGAATCGGATCAAGAAAATCATGAGGGATGAGAATTCTGATTTGCGCATAAATCAGGAAGCTTTGTTTCTCGTCAACAAAGCAACGGTAAGCCCTCAACACCCCGCCCCACCCCACACAGGCATTGCTCAAAATTAGGTCTTTTCTTGTTGGTGGAAGATGGATAGGCATTGTTTGTTTCTAAAGGTCTGTAAGCTTCTTAATTGGTTGCAGGAGATGTTTCTTGTGCAATTTTGCAAGGATGCATATGCGTGCTGTGCTCAGGATCGCAAGAAGTCTCTTGCTTACAAGCATCTATGTAATGTTCCTATTCTCTATCCTGATATCATGCTCAATCTTCATTTTCATTTACCCTTCTTGTCTGGTTCTGATCTAAAAAGAAAGCTAGACCTGTGAATTATATCGTTGTGTACTTCAACTGCACTATCATATGCCCATGGCAGGGCTTTACCTTTAATGAAATGTTTCAATATATGTTCCCCATGATTCAAGGGACCAGATTTAAGAATGGCTGGTCTTGTTTTTTCTGTATTCATGCTGCAAAATGAATAGCAGCATGATGGTCAGCTATTTAGTAGTGACAAGGAAGATATCATGATCACTGTCATAGTTTAACATGGATTATGACCTTAGATTTAGGTTACTCCAATTACATGGTTGTTAAGGGACTTGAATTATATGAGCCTCTATCTGTCAAACTATTGCGTTGTGGAGAATTACTGATTTGTATTATCAGTGCATTGCTTTATGCTTTCAAAGAGCTAGATCCCCAATGAGTTCACATATATGAGGAGGAAGAATAAAAGCCAGTGGAAGGAAAGTTGTTGAATCTGATACTTGGGAAGGGCATAAGTTGGTTGGGGAGGGGTCCGTAATTGTAACAACTCAAGTCCACCACTAGCAGATATTATCCTCTTTGGGTTTTCCCTTTCGGGCTTTCCTTCAAGGTTTTAAAACGCGTCTGTCAGGGAGGTTTACTCACCCTTATAAAGAATGGCTTCGTTCTCCTCCCCAACCGATGTGGGATCTCATGATCCACCCCCCTTCGCGTTCCCTTCTCCATTCGATGTGGGACCCCCCAATCCACCCCCTTTCGAGGCCCAACGTCCTTGCTGGCACATTGCCTTGTGTCCACCTCCTTTGGGGCTCAGCCTTCTCGCTCACACATCGCCCGGTGTCTGGCTCTGATATCATTTGTAACCACCCAAGTCCACCACTAGCACATATTGTCCTCTTTGGGCTTTCTCTTTCAGGCTTCCCTTCAAGGTTTTAAAACGCATCTGCTAAGGAGAGGTTTCCATACCCTTATAAAAAATGGTACGTTCTCCTCTCCAACCGATGTGGGATCTCACGGTAATTGATATCAGCACTCCTTTTGGACAACGGTAAGGTAGGTGGTCAAGGGAACAGAAAGGGAGAATATTGAAGTACATATTTGGTAGACAAAAATGGGGAGGGATTGTGAGTCTAGTATGAAATTTCAATTTGGATGAGGAGAGAACAGGAAGACTCCTGGATCTCTTCCCTTTTGTTTTGTTCTGCTATCTATTCCTAGAAAGTGAATTCAAGTGTCTATCATCTGTCTAGGGGACGAAATTTTGATAAGCCTTTCGTTTTACTTATTGCTTCATATATCTACTATTGCTAATAATTTCACTTGTGAGAATTCTGAAGATACTTCTTTTCTTTATGACCACATTTTGATGTTGGAAAATGTGGGGGTAGAAAGGAAAAAAGGAGGCATTTTCTTCTATCCCGAATAAAGGAAAAGAGGAGGCATTGTGTTATGTGTAAGATTTTTATTGAAGTAGTAGTAAGACTCTCCTTTGTTGTTGCAGCATCAGTAGTTTGCAAAAGGAAGAGATACGACTTTCTTTCAGGTACGTACATACCCATGCCTATTACTTAAGGCTCAACTACTGCTACTATTAGAAAGATTCTTGAACTGTCAAACGCGGTATAAGACGTGTTTTTTTCATCTCCAGATTTTGTCCCAGAGAAATTAAAATTTGAAGATGCATTGAAGGAAAGAAGCATGGCAGAATCAGGAAAAGACTAGGCTTTTTGATATCTTAATCTAACACTTCATCTTGTTCTGTGGATGTGTTGGGTTTAGGTATCTTTTTTTTGTCATGTCAATGGGAATACATGGAAGTTAGAACATTCATTTTCCCTCCGTACAGTTCTGTAAGTTTATTAACGACATCTCAGATCTAACATAATTAAACTATTACTTACACAGGGATCTTTTTTCTTCCTGGGCAAATCCAACAAATCTATTTGCTCAAAAGCAGAAA

mRNA sequence

TGCCCCGGGAGCTGGGGAAGTGAAAGTCGCTAAAATCGGCCGAGCGCAGTAAATAGAGTCCCAGATGCAGGCCAGATAGAGCATCAATTCTTCAGTGCGAGCACGCTGTATGTTCTATACCGAGTACTCAGTAAATTATAGACCACTGCAAATCTGCGGGGAAGAAGGCGCAAATCCTTCTTTCATTTGTTGAGTCAAAAGGACATTAAAATCCCCCCTCATCTAAGGACGATGACTTGCCAGTGTGTAGGTTCTTGGTGAAAAAGGACCCGTAGTTCCCCCAAATTCTCAAACACCGATCTTTAACCATGGCTTCGTCCAAAAAATCCAGTAGTGAAGCCAAGAGCAAAGAAGCGGGAACTTCAAAACCAGCCCCCAACAACAAGACCCACAACAACAACGCCAGAACAATCGACAAGGTTTATTCAAAGAAGAAGAAGGTTAGCAACAGCAACAAGCACACTAGCAATGGCTCTGTGAAGGAGAACGAGGTGTTACCCATTTCTGCTCCAGGCGATGCCGAAGAAGACAGAGCAGAAACCACGAGTAAATCGCCTAACACCTCCAAATCGAAGAAAGTTAAACGGAACCGTGGAAAGAAAGAACAGAATGGTTATGTAGAAGAAGAAGAAGAAGCAGAAGAAGAAGCTGAGGAGAAGATTTACAAATTCCCTATGAATCGGATCAAGAAAATCATGAGGGATGAGAATTCTGATTTGCGCATAAATCAGGAAGCTTTGTTTCTCGTCAACAAAGCAACGGAGATGTTTCTTGTGCAATTTTGCAAGGATGCATATGCGTGCTGTGCTCAGGATCGCAAGAAGTCTCTTGCTTACAAGCATCTATCATCAGTAGTTTGCAAAAGGAAGAGATACGACTTTCTTTCAGATTTTGTCCCAGAGAAATTAAAATTTGAAGATGCATTGAAGGAAAGAAGCATGGCAGAATCAGGAAAAGACTAGGCTTTTTGATATCTTAATCTAACACTTCATCTTGTTCTGTGGATGTGTTGGGTTTAGGTATCTTTTTTTTGTCATGTCAATGGGAATACATGGAAGTTAGAACATTCATTTTCCCTCCGTACAGTTCTGTAAGTTTATTAACGACATCTCAGATCTAACATAATTAAACTATTACTTACACAGGGATCTTTTTTCTTCCTGGGCAAATCCAACAAATCTATTTGCTCAAAAGCAGAAA

Coding sequence (CDS)

ATGGCTTCGTCCAAAAAATCCAGTAGTGAAGCCAAGAGCAAAGAAGCGGGAACTTCAAAACCAGCCCCCAACAACAAGACCCACAACAACAACGCCAGAACAATCGACAAGGTTTATTCAAAGAAGAAGAAGGTTAGCAACAGCAACAAGCACACTAGCAATGGCTCTGTGAAGGAGAACGAGGTGTTACCCATTTCTGCTCCAGGCGATGCCGAAGAAGACAGAGCAGAAACCACGAGTAAATCGCCTAACACCTCCAAATCGAAGAAAGTTAAACGGAACCGTGGAAAGAAAGAACAGAATGGTTATGTAGAAGAAGAAGAAGAAGCAGAAGAAGAAGCTGAGGAGAAGATTTACAAATTCCCTATGAATCGGATCAAGAAAATCATGAGGGATGAGAATTCTGATTTGCGCATAAATCAGGAAGCTTTGTTTCTCGTCAACAAAGCAACGGAGATGTTTCTTGTGCAATTTTGCAAGGATGCATATGCGTGCTGTGCTCAGGATCGCAAGAAGTCTCTTGCTTACAAGCATCTATCATCAGTAGTTTGCAAAAGGAAGAGATACGACTTTCTTTCAGATTTTGTCCCAGAGAAATTAAAATTTGAAGATGCATTGAAGGAAAGAAGCATGGCAGAATCAGGAAAAGACTAG

Protein sequence

MASSKKSSSEAKSKEAGTSKPAPNNKTHNNNARTIDKVYSKKKKVSNSNKHTSNGSVKENEVLPISAPGDAEEDRAETTSKSPNTSKSKKVKRNRGKKEQNGYVEEEEEAEEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD

Homology

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BLAST of CmoCh20G005140 vs. ExPASy Swiss-Prot
Match: Q9NRG0 (Chromatin accessibility complex protein 1 OS=Homo sapiens OX=9606 GN=CHRAC1 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.6e-06
Identity = 34/106 (32.08%), Postives = 57/106 (53.77%), Query Frame = 0


Query: 111 EEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDR 170
           ++  E+++   P++RI+ IM+       INQEAL L  KATE+F+      +Y   +   
Sbjct: 9   DKGGEQRLISLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYSYRHGSGKE 68

Query: 171 KKSLAYKHLSSVVCKRKRYDFLSDFVPEKL---KFEDALKERSMAE 214
           KK L Y  L++   + + + FL+D +P+K+   K+   LKE    E
Sbjct: 69  KKVLTYSDLANTAQQSETFQFLADILPKKILASKYLKMLKEEKREE 114

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BLAST of CmoCh20G005140 vs. ExPASy Swiss-Prot
Match: Q9V452 (Chromatin accessibility complex 16kD protein OS=Drosophila melanogaster OX=7227 GN=Chrac-16 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.4e-06
Identity = 35/100 (35.00%), Postives = 53/100 (53.00%), Query Frame = 0


Query: 122 PMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYA-CCAQDRKKSLAYKHLS 181
           P++R++ IM+       I  E LFL+ K TE+F+      AY     Q   ++L Y+HLS
Sbjct: 21  PLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLS 80

Query: 182 SVVCKRKRYDFLSDFVPEKLK---FEDALKERSMAESGKD 218
            VV K K  +FL   VP+K++   F++ L+    A S  D
Sbjct: 81  QVVNKNKNLEFLLQIVPQKIRVHQFQEMLRLNRSAGSDDD 120

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BLAST of CmoCh20G005140 vs. ExPASy Swiss-Prot
Match: Q9JKP8 (Chromatin accessibility complex protein 1 OS=Mus musculus OX=10090 GN=Chrac1 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.4e-06
Identity = 35/110 (31.82%), Postives = 58/110 (52.73%), Query Frame = 0


Query: 111 EEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDR 170
           E+  ++++   P++RI+ IM+       INQEAL L  KATE+F+      +Y   +   
Sbjct: 9   EKCGDQRLVSLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQYLATCSYRHGSGKA 68

Query: 171 KKSLAYKHLSSVVCKRKRYDFLSDFVPEKL---KFEDALKERSMAESGKD 218
           KK+L Y  L+S     +   FL+D +P+K+   K+   LKE+   E   +
Sbjct: 69  KKALTYSDLASTAEDSETLQFLADILPKKILASKYLKMLKEKREEEEDNE 118

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BLAST of CmoCh20G005140 vs. ExPASy Swiss-Prot
Match: Q9XE33 (Nuclear transcription factor Y subunit C-6 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYC6 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 8.4e-05
Identity = 28/98 (28.57%), Postives = 54/98 (55.10%), Query Frame = 0


Query: 100 QNGYVEEEEEAEEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFC 159
           QN + E+  E E   + K +  P+ RIKKIM+ +     I  EA  +  +A EMF+++  
Sbjct: 70  QNFWAEQYREIEHTTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELT 129

Query: 160 KDAYACCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVP 198
              +A   ++++++L    +++ + + + +DFL D VP
Sbjct: 130 HRGWAHAEENKRRTLQKSDIAAAIARTEVFDFLVDIVP 167

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BLAST of CmoCh20G005140 vs. ExPASy Swiss-Prot
Match: Q8LCG7 (Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana OX=3702 GN=NFYC2 PE=1 SV=2)

HSP 1 Score: 46.6 bits (109), Expect = 4.2e-04
Identity = 29/109 (26.61%), Postives = 57/109 (52.29%), Query Frame = 0


Query: 103 YVEEEEEAEEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDA 162
           +  + +E E   + K +  P+ RIKKIM+ +     I+ EA  +  KA EMF+++    A
Sbjct: 59  WANQMQEIEHTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRA 118

Query: 163 YACCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSM 212
           +    ++++++L    +++ + +   +DFL D +P      D LKE  +
Sbjct: 119 WIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP-----RDELKEEGL 162

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BLAST of CmoCh20G005140 vs. ExPASy TrEMBL
Match: A0A6J1FVY8 (DNA polymerase epsilon subunit C-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448974 PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 2.1e-107
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0


Query: 1   MASSKKSSSEAKSKEAGTSKPAPNNKTHNNNARTIDKVYSKKKKVSNSNKHTSNGSVKEN 60
           MASSKKSSSEAKSKEAGTSKPAPNNKTHNNNARTIDKVYSKKKKVSNSNKHTSNGSVKEN
Sbjct: 1   MASSKKSSSEAKSKEAGTSKPAPNNKTHNNNARTIDKVYSKKKKVSNSNKHTSNGSVKEN 60

Query: 61  EVLPISAPGDAEEDRAETTSKSPNTSKSKKVKRNRGKKEQNGYVEEEEEAEEEAEEKIYK 120
           EVLPISAPGDAEEDRAETTSKSPNTSKSKKVKRNRGKKEQNGYVEEEEEAEEEAEEKIYK
Sbjct: 61  EVLPISAPGDAEEDRAETTSKSPNTSKSKKVKRNRGKKEQNGYVEEEEEAEEEAEEKIYK 120

Query: 121 FPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKKSLAYKHLS 180
           FPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKKSLAYKHLS
Sbjct: 121 FPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKKSLAYKHLS 180

Query: 181 SVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 218
           SVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD
Sbjct: 181 SVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 217

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BLAST of CmoCh20G005140 vs. ExPASy TrEMBL
Match: A0A6J1JF10 (DNA polymerase epsilon subunit C-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483919 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.4e-98
Identity = 209/228 (91.67%), Postives = 212/228 (92.98%), Query Frame = 0


Query: 1   MASSKKSSSEAKSKEAGTSKPAPNNKTH------NNNARTIDKVYSKKKKV-SNSNKHTS 60
           MASSKKSSSEAKSKEAGTSKPAP NKTH      NNNAR +DKVYSKKKKV SN+NKHTS
Sbjct: 1   MASSKKSSSEAKSKEAGTSKPAPKNKTHNNNNNNNNNARKVDKVYSKKKKVSSNNNKHTS 60

Query: 61  NGSVKENEVLPISAPGDAEEDRAETTSKSPNTSKSKKVKRNRGKKEQNGYV----EEEEE 120
           NGSVKENEVLPISAPGDAEEDR ETTSKSPNTSKSKKVKRN GKKE+NGY     EEEEE
Sbjct: 61  NGSVKENEVLPISAPGDAEEDRVETTSKSPNTSKSKKVKRNHGKKEENGYAEEEEEEEEE 120

Query: 121 AEEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQD 180
           AEEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQD
Sbjct: 121 AEEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQD 180

Query: 181 RKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 218
           RKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD
Sbjct: 181 RKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 228

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BLAST of CmoCh20G005140 vs. ExPASy TrEMBL
Match: A0A6J1FY58 (DNA polymerase epsilon subunit C-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448974 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.7e-85
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MASSKKSSSEAKSKEAGTSKPAPNNKTHNNNARTIDKVYSKKKKVSNSNKHTSNGSVKEN 60
           MASSKKSSSEAKSKEAGTSKPAPNNKTHNNNARTIDKVYSKKKKVSNSNKHTSNGSVKEN
Sbjct: 1   MASSKKSSSEAKSKEAGTSKPAPNNKTHNNNARTIDKVYSKKKKVSNSNKHTSNGSVKEN 60

Query: 61  EVLPISAPGDAEEDRAETTSKSPNTSKSKKVKRNRGKKEQNGYVEEEEEAEEEAEEKIYK 120
           EVLPISAPGDAEEDRAETTSKSPNTSKSKKVKRNRGKKEQNGYVEEEEEAEEEAEEKIYK
Sbjct: 61  EVLPISAPGDAEEDRAETTSKSPNTSKSKKVKRNRGKKEQNGYVEEEEEAEEEAEEKIYK 120

Query: 121 FPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKKSLAYKHL 180
           FPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKKSLAYKHL
Sbjct: 121 FPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKKSLAYKHL 179

[Close]

BLAST of CmoCh20G005140 vs. ExPASy TrEMBL
Match: A0A1S3CKU7 (DNA polymerase epsilon subunit C OS=Cucumis melo OX=3656 GN=LOC103501940 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 2.2e-77
Identity = 178/226 (78.76%), Postives = 189/226 (83.63%), Query Frame = 0


Query: 1   MASSKKSSSEAKSKEAGTSKPAPNNKTHNNNARTIDKVYSKKKKVSNS-NKHTSNGSVKE 60
           MASSKKSS+EAK KEAGTSKPAP  KTH NNAR  DK  SKKKK     +  T+NGSVK+
Sbjct: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTH-NNARNSDKEISKKKKKKKKISISTNNGSVKD 60

Query: 61  NEVLPISAPGD--------AEEDRAETTSKSPNTSKSKKVKRNRGKKEQNGYVEEEEEAE 120
           NEVL +S PG         A+ED+AETTS+   TSKSKKVKRN  K+E NGY EEE   E
Sbjct: 61  NEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEE---E 120

Query: 121 EEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRK 180
           EEAEEKIYKFPM+RIKKIMRDENSDLRINQEALFLVNKA+EMFLVQFCKDAYACCAQDRK
Sbjct: 121 EEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRK 180

Query: 181 KSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 218
           KSLAYKHLSSVV KRKRYDFLSDFVPEKLKFEDALKERSMAESGKD
Sbjct: 181 KSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 222

[Close]

BLAST of CmoCh20G005140 vs. ExPASy TrEMBL
Match: A0A6J1JCZ8 (DNA polymerase epsilon subunit C-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111483919 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 1.1e-76
Identity = 171/190 (90.00%), Postives = 174/190 (91.58%), Query Frame = 0


Query: 1   MASSKKSSSEAKSKEAGTSKPAPNNKTH------NNNARTIDKVYSKKKKV-SNSNKHTS 60
           MASSKKSSSEAKSKEAGTSKPAP NKTH      NNNAR +DKVYSKKKKV SN+NKHTS
Sbjct: 1   MASSKKSSSEAKSKEAGTSKPAPKNKTHNNNNNNNNNARKVDKVYSKKKKVSSNNNKHTS 60

Query: 61  NGSVKENEVLPISAPGDAEEDRAETTSKSPNTSKSKKVKRNRGKKEQNGYV----EEEEE 120
           NGSVKENEVLPISAPGDAEEDR ETTSKSPNTSKSKKVKRN GKKE+NGY     EEEEE
Sbjct: 61  NGSVKENEVLPISAPGDAEEDRVETTSKSPNTSKSKKVKRNHGKKEENGYAEEEEEEEEE 120

Query: 121 AEEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQD 180
           AEEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQD
Sbjct: 121 AEEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQD 180

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BLAST of CmoCh20G005140 vs. NCBI nr
Match: XP_022944557.1 (DNA polymerase epsilon subunit C-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 398.3 bits (1022), Expect = 4.3e-107
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0


Query: 1   MASSKKSSSEAKSKEAGTSKPAPNNKTHNNNARTIDKVYSKKKKVSNSNKHTSNGSVKEN 60
           MASSKKSSSEAKSKEAGTSKPAPNNKTHNNNARTIDKVYSKKKKVSNSNKHTSNGSVKEN
Sbjct: 1   MASSKKSSSEAKSKEAGTSKPAPNNKTHNNNARTIDKVYSKKKKVSNSNKHTSNGSVKEN 60

Query: 61  EVLPISAPGDAEEDRAETTSKSPNTSKSKKVKRNRGKKEQNGYVEEEEEAEEEAEEKIYK 120
           EVLPISAPGDAEEDRAETTSKSPNTSKSKKVKRNRGKKEQNGYVEEEEEAEEEAEEKIYK
Sbjct: 61  EVLPISAPGDAEEDRAETTSKSPNTSKSKKVKRNRGKKEQNGYVEEEEEAEEEAEEKIYK 120

Query: 121 FPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKKSLAYKHLS 180
           FPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKKSLAYKHLS
Sbjct: 121 FPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKKSLAYKHLS 180

Query: 181 SVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 218
           SVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD
Sbjct: 181 SVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 217

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BLAST of CmoCh20G005140 vs. NCBI nr
Match: KAG7010622.1 (Chromatin accessibility complex protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 384.8 bits (987), Expect = 4.9e-103
Identity = 213/224 (95.09%), Postives = 215/224 (95.98%), Query Frame = 0


Query: 1   MASSKKSSSEAKSKEAGTSKPAPNNKTHNNNARTIDKVYSKKKKVSNSNKHTSNGSVKEN 60
           MASSKKSSSEAKS+EAGTSKPAP NKTHNNNARTIDKVYSKKKKVSN+NKHTSNGSVKEN
Sbjct: 1   MASSKKSSSEAKSREAGTSKPAPKNKTHNNNARTIDKVYSKKKKVSNNNKHTSNGSVKEN 60

Query: 61  EVLPISAPGDAEEDRAETTSKSPNTSKSKKVKRNRGKKEQNGYV-------EEEEEAEEE 120
           EVLPISAPGDAEEDRAETTSKSPNTSKSKKVKRN GKKEQNGYV       EEEEEAEEE
Sbjct: 61  EVLPISAPGDAEEDRAETTSKSPNTSKSKKVKRNHGKKEQNGYVEEEEEEEEEEEEAEEE 120

Query: 121 AEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKKS 180
           AEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKKS
Sbjct: 121 AEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKKS 180

Query: 181 LAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 218
           LAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD
Sbjct: 181 LAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 224

[Close]

BLAST of CmoCh20G005140 vs. NCBI nr
Match: KAG6570775.1 (Chromatin accessibility complex 16kD protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 380.6 bits (976), Expect = 9.3e-102
Identity = 213/224 (95.09%), Postives = 215/224 (95.98%), Query Frame = 0


Query: 1   MASSKKSSSEAKSKEAGTSKPAPNNKTH--NNNARTIDKVYSKKKKVSNSNKHTSNGSVK 60
           MASSKKSSSEAKS+EAGTSKPAP NKTH  NNNARTIDKVYSKKKKVSN+NKHTSNGSVK
Sbjct: 1   MASSKKSSSEAKSREAGTSKPAPKNKTHNNNNNARTIDKVYSKKKKVSNNNKHTSNGSVK 60

Query: 61  ENEVLPISAPGDAEEDRAETTSKSPNTSKSKKVKRNRGKKEQNGYV-----EEEEEAEEE 120
           ENEVLPISAPGDAEEDRAETTSKSPNTSKSKKVKRN GKKEQNGYV     EEEEEAEEE
Sbjct: 61  ENEVLPISAPGDAEEDRAETTSKSPNTSKSKKVKRNHGKKEQNGYVEEEEEEEEEEAEEE 120

Query: 121 AEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKKS 180
           AEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKKS
Sbjct: 121 AEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKKS 180

Query: 181 LAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 218
           LAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD
Sbjct: 181 LAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 224

[Close]

BLAST of CmoCh20G005140 vs. NCBI nr
Match: XP_022986059.1 (DNA polymerase epsilon subunit C-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 369.0 bits (946), Expect = 2.8e-98
Identity = 209/228 (91.67%), Postives = 212/228 (92.98%), Query Frame = 0


Query: 1   MASSKKSSSEAKSKEAGTSKPAPNNKTH------NNNARTIDKVYSKKKKV-SNSNKHTS 60
           MASSKKSSSEAKSKEAGTSKPAP NKTH      NNNAR +DKVYSKKKKV SN+NKHTS
Sbjct: 1   MASSKKSSSEAKSKEAGTSKPAPKNKTHNNNNNNNNNARKVDKVYSKKKKVSSNNNKHTS 60

Query: 61  NGSVKENEVLPISAPGDAEEDRAETTSKSPNTSKSKKVKRNRGKKEQNGYV----EEEEE 120
           NGSVKENEVLPISAPGDAEEDR ETTSKSPNTSKSKKVKRN GKKE+NGY     EEEEE
Sbjct: 61  NGSVKENEVLPISAPGDAEEDRVETTSKSPNTSKSKKVKRNHGKKEENGYAEEEEEEEEE 120

Query: 121 AEEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQD 180
           AEEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQD
Sbjct: 121 AEEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQD 180

Query: 181 RKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 218
           RKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD
Sbjct: 181 RKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 228

[Close]

BLAST of CmoCh20G005140 vs. NCBI nr
Match: XP_023512055.1 (DNA polymerase epsilon subunit C-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023512056.1 DNA polymerase epsilon subunit C-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 367.1 bits (941), Expect = 1.1e-97
Identity = 208/228 (91.23%), Postives = 211/228 (92.54%), Query Frame = 0


Query: 1   MASSKKSSSEAKSKEAGTSKPAPNNKTH---NNNARTIDKVYSKKKKVS---NSNKHTSN 60
           MASSKKSSSEAKSKEAGTSKPAP NKTH   NNNARTIDKVYSKKKKVS   N+NKHTSN
Sbjct: 1   MASSKKSSSEAKSKEAGTSKPAPKNKTHNNNNNNARTIDKVYSKKKKVSNNNNNNKHTSN 60

Query: 61  GSVKENEVLPISAPGDAEEDRAETTSKSPNTSKSKKVKRNRGKKEQNGYVEEEE-----E 120
           GSVKENEVLPISAPGDAEEDR ETTSKSPNT+KSKKVKRN GKKE+NGY EEEE     E
Sbjct: 61  GSVKENEVLPISAPGDAEEDRVETTSKSPNTTKSKKVKRNHGKKEENGYAEEEEEEEEAE 120

Query: 121 AEEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQD 180
            EEE EEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQD
Sbjct: 121 EEEEVEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQD 180

Query: 181 RKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 218
           RKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD
Sbjct: 181 RKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 228

[Close]

BLAST of CmoCh20G005140 vs. TAIR 10
Match: AT1G07980.1 (nuclear factor Y, subunit C10 )

HSP 1 Score: 98.2 bits (243), Expect = 8.6e-21
Identity = 86/221 (38.91%), Postives = 120/221 (54.30%), Query Frame = 0


Query: 1   MASSKKSSSEAKSKEAGTSKPAPNNKTHNNNARTIDKVYSKKKKVSNSNKHTSNGSVKEN 60
           M SSKK   +    +   +K +  +K  +          S+ KK SN      N   K+ 
Sbjct: 1   MVSSKKPKEKKARSDVVVNKASGRSKRSSG---------SRTKKTSNK----VNIVKKKP 60

Query: 61  EVLPISAPGDAEEDRAETTSKSPNTSKSKKVKRNRGKKEQNGYVEEEEEAEEE----AEE 120
           E+  IS    +  D  E   +     KS  V   RG  +  G   +  +  EE    AE+
Sbjct: 61  EIYEISE--SSSSDSVEEAIRGDEAKKSNGVVSKRGNGKSVGIPTKTSKNREEDDGGAED 120

Query: 121 KIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKKSLAY 180
              KFPMNRI++IMR +NS  +I Q+A+FLVNKATEMF+ +F ++AY    +D+KK + Y
Sbjct: 121 AKIKFPMNRIRRIMRSDNSAPQIMQDAVFLVNKATEMFIERFSEEAYDSSVKDKKKFIHY 180

Query: 181 KHLSSVVCKRKRYDFLSDFVPEKLKFEDALK--ERSMAESG 216
           KHLSSVV   +RY+FL+D VPEKLK E AL+  ER M ++G
Sbjct: 181 KHLSSVVSNDQRYEFLADSVPEKLKAEAALEEWERGMTDAG 206

[Close]

BLAST of CmoCh20G005140 vs. TAIR 10
Match: AT1G56170.1 (nuclear factor Y, subunit C2 )

HSP 1 Score: 46.6 bits (109), Expect = 3.0e-05
Identity = 29/109 (26.61%), Postives = 57/109 (52.29%), Query Frame = 0


Query: 103 YVEEEEEAEEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDA 162
           +  + +E E   + K +  P+ RIKKIM+ +     I+ EA  +  KA EMF+++    A
Sbjct: 59  WANQMQEIEHTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRA 118

Query: 163 YACCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSM 212
           +    ++++++L    +++ + +   +DFL D +P      D LKE  +
Sbjct: 119 WIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP-----RDELKEEGL 162

[Close]

BLAST of CmoCh20G005140 vs. TAIR 10
Match: AT1G56170.2 (nuclear factor Y, subunit C2 )

HSP 1 Score: 46.6 bits (109), Expect = 3.0e-05
Identity = 29/109 (26.61%), Postives = 57/109 (52.29%), Query Frame = 0


Query: 103 YVEEEEEAEEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDA 162
           +  + +E E   + K +  P+ RIKKIM+ +     I+ EA  +  KA EMF+++    A
Sbjct: 59  WANQMQEIEHTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRA 118

Query: 163 YACCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSM 212
           +    ++++++L    +++ + +   +DFL D +P      D LKE  +
Sbjct: 119 WIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP-----RDELKEEGL 162

[Close]

BLAST of CmoCh20G005140 vs. TAIR 10
Match: AT5G63470.1 (nuclear factor Y, subunit C4 )

HSP 1 Score: 45.8 bits (107), Expect = 5.0e-05
Identity = 28/100 (28.00%), Postives = 59/100 (59.00%), Query Frame = 0


Query: 106 EEEEAEEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYAC 165
           + +E E+  + K ++ P+ RIKKIM+ +     I+ EA  L  KA E+F+++    ++  
Sbjct: 64  QRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLH 123

Query: 166 CAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVP-EKLKFED 205
             ++++++L    +++ + +   +DFL D VP E++K E+
Sbjct: 124 AEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEE 163

[Close]

BLAST of CmoCh20G005140 vs. TAIR 10
Match: AT5G63470.2 (nuclear factor Y, subunit C4 )

HSP 1 Score: 45.8 bits (107), Expect = 5.0e-05
Identity = 28/100 (28.00%), Postives = 59/100 (59.00%), Query Frame = 0


Query: 106 EEEEAEEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYAC 165
           + +E E+  + K ++ P+ RIKKIM+ +     I+ EA  L  KA E+F+++    ++  
Sbjct: 64  QRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLH 123

Query: 166 CAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVP-EKLKFED 205
             ++++++L    +++ + +   +DFL D VP E++K E+
Sbjct: 124 AEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEE 163

The following BLAST results are available for this feature:

BLAST of CmoCh20G005140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9NRG0	2.6e-06	32.08	Chromatin accessibility complex protein 1 OS=Homo sapiens OX=9606 GN=CHRAC1 PE=1...	[more]
Q9V452	3.4e-06	35.00	Chromatin accessibility complex 16kD protein OS=Drosophila melanogaster OX=7227 ...	[more]
Q9JKP8	4.4e-06	31.82	Chromatin accessibility complex protein 1 OS=Mus musculus OX=10090 GN=Chrac1 PE=...	[more]
Q9XE33	8.4e-05	28.57	Nuclear transcription factor Y subunit C-6 OS=Oryza sativa subsp. japonica OX=39...	[more]
Q8LCG7	4.2e-04	26.61	Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]

BLAST of CmoCh20G005140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FVY8	2.1e-107	100.00	DNA polymerase epsilon subunit C-like isoform X1 OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1JF10	1.4e-98	91.67	DNA polymerase epsilon subunit C-like isoform X1 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1FY58	1.7e-85	100.00	DNA polymerase epsilon subunit C-like isoform X2 OS=Cucurbita moschata OX=3662 G...	[more]
A0A1S3CKU7	2.2e-77	78.76	DNA polymerase epsilon subunit C OS=Cucumis melo OX=3656 GN=LOC103501940 PE=4 SV...	[more]
A0A6J1JCZ8	1.1e-76	90.00	DNA polymerase epsilon subunit C-like isoform X2 OS=Cucurbita maxima OX=3661 GN=...	[more]

BLAST of CmoCh20G005140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022944557.1	4.3e-107	100.00	DNA polymerase epsilon subunit C-like isoform X1 [Cucurbita moschata]	[more]
KAG7010622.1	4.9e-103	95.09	Chromatin accessibility complex protein 1, partial [Cucurbita argyrosperma subsp...	[more]
KAG6570775.1	9.3e-102	95.09	Chromatin accessibility complex 16kD protein, partial [Cucurbita argyrosperma su...	[more]
XP_022986059.1	2.8e-98	91.67	DNA polymerase epsilon subunit C-like isoform X1 [Cucurbita maxima]	[more]
XP_023512055.1	1.1e-97	91.23	DNA polymerase epsilon subunit C-like isoform X1 [Cucurbita pepo subsp. pepo] >X...	[more]

BLAST of CmoCh20G005140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07980.1	8.6e-21	38.91	nuclear factor Y, subunit C10	[more]
AT1G56170.1	3.0e-05	26.61	nuclear factor Y, subunit C2	[more]
AT1G56170.2	3.0e-05	26.61	nuclear factor Y, subunit C2	[more]
AT5G63470.1	5.0e-05	28.00	nuclear factor Y, subunit C4	[more]
AT5G63470.2	5.0e-05	28.00	nuclear factor Y, subunit C4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 97..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..115
None	No IPR available	PANTHER	PTHR10252:SF93	HISTONE-LIKE TRANSCRIPTION FACTOR AND ARCHAEAL HISTONE FAMILY PROTEIN, EXPRESSED	coord: 9..214
None	No IPR available	PANTHER	PTHR10252	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	coord: 9..214
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 120..183 e-value: 1.3E-17 score: 63.8
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 77..198 e-value: 4.4E-25 score: 90.2
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 120..197

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G005140.1	CmoCh20G005140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046982	protein heterodimerization activity