CmoCh20G004600 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh20G004600
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Histone H2B
Location	Cmo_Chr20: 2133650 .. 2136031 (-)
RNA-Seq Expression	CmoCh20G004600
Synteny	CmoCh20G004600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCAAAGGCAGATAAGAAACCCGCCGAGAAGAAGCCAGCCGCTGAAAAGCCGGCCGAGGAGAAGAAATCTGTCGCGGAGAAAGCTCCGGCGGAGAAAAAGCCCAAGGCTGGAAAGAAGCTTCCGAAGGAAGGCGGCGCCGCTGCTGCTGGAGATAAGAAGAAGAAGAGGTCGAAGAAGAGCGTAGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAAGTTCATCCAGACATCGGTATTTCCAGCAAGGCCATGGGTATCATGAACAGTTTCATCAACGATATCTTTGAGAAACTCGCTCAGGAGTCATCTAAGTTGGCTCGCTACAACAAGAAACCTACCATAACTTCAAGGGAGATCCAGACAGCCGTCAGGCTTGTTCTTCCCGGTGAGTTGGCCAAGCACGCCGTGTCTGAGGGTACGAAGGCAGTAACTAAGTTCACAAGTTCTTAGAATCTGAATTAGCCGAAGCAATGGATACCGATAGGTGCCTTTAGGTGAGAGATTATTAAGAAATTAGGGTTACGAGCTCTGTTTTACCTATTATGATGCGTTCCTGTATTTGATAGCTTTTGGATTTGACAAGTTTTCTCATATAGATGCTTATGATTTGTAAATTCTACTTTATGTGCTTGTAATGGAAGTGGTTTTGTTCATCTGTCTCTTCTCGTCAAAAGAAAATTATCTGGCTGATCTTCGGAGCGAAATTGTTGATCTCTTAACTTTTGACCTTGCTGATAGACGTCTGAATCATGTCCTTGGGAATTTGCTTCTTGCCATCAAAAATCACTGTTCGACCGTTGAATTTGGGGCTCTTGGATTTGTTCTTCCTGGATTGAGATTGTTAGCTGTATCATAAACTTTTGCACACTTTCCATCGTGATCAATTAAGATGTCTCATCTATGCATACACGTTTTAGATTCTCGGACTTTTTGTAGCCTTATTCTTAACTGATCTCTCATCAGTGGCTAAGATTTTTGATATCTTGATTTGTTTTTGTTTGAATACTCGGGCATTCTCAAGTATGGCGTAGAAATTTGATTTTACATTGGTTTTAATTGTGGTTTTTTTGGCTGTAATCTGTCAAGCACGAGATGAATTTGGCTACACAATACAAGAAAGTGCTGATGCTGCTACTGCCGGCTGCCATTTGAAGACTTGTTGGGTTAGATGTTCTTGCTTGTTCTTTGATTATTTTGAAATCGTAAATAACCATGATTGTTGCCTTAATAATACTCTATTACTTAGTATCATCTTAGTGCTGGCATTGCTGAATTTTCAAGGAATACTTAAATTTCTTAAACTTGTTCATCGGATCGATATTTTTGTTTGTTAGCTTGTCTGCATCATATAATCAGAAGACTCCAAATTTGATGGTGTCTTCTGTGAAATACTGAGTTTATGTCGTGGGTGGTAACCGCGGTGCATTCTGTCTCTTTCTCCATCTTCAAGAATAGATATCTAATTAATTTTTTTTTTTACATTAATTGTAGGTTTGAAATAGGGTCCGGACTTTTCTTTTCTATTTCTTCAAGCGTTTTAAAGAATCTAGACTATCTTTACAAACTAACACGGATTCTTAACACTTTTTTGTCTCTACTCACGTCTTTTTTAGAAAATTTTCTAAGACATCACTTAGCACAAGATCGTTCTATTTAGCTAAACATGCTTTAATTTTAGAGTTTTTATGATTGTGCCATTGAAGGAGAAGTTAGATCTTATAGGTATAGGTCGTGCGTAGCGTCCAATTCTTTTAAGTCCTTAACCGTACTCTCTTTAGTATCTATCACTCTCATTCAAATGCTTCCTTTACTCGAATGATACATTAATAGTTGTGGGTTTTGTTTTTTGGGATCATAACACTTATATTTGGTAATGAATTCTTATATTTATCGGTATTAATGTAGGTAGTGCCCCTTATTTATAATTGAATCTTCGGTTACTCGAGTGATACATTAATAGTGGTGGGTTTTGATTTTTGGGATCATAACACTTATATTTGGTAATTCATATATTTATCGGTATTAATGTCGGTAGTGTCCCTTATTTATACACTCTAGATCTTTCCTTTATGATATTGTTCGATTTCATAGCTTAATATCTATAGTGTCCTTTATTTATATACTCATATATTGTCCATTTTGAGTATAAACTTGTTGAAAGTGTCTTTTATTTATATACTTAGGATTTCGATTATGATATTGTCCATTTTGAGCATAAGTTTTTATAGTTCAACTCAATATTGTGGTTATTTATATACTCATGATCTTCCCGGCTTAAAAGCTTTTCTTTTTTCTTTTTAGGTACTCAAAAAAACGTGGCAAGCTGATATAAATGAAACAGAGAAGAATCTTCCTCAGGCAGTTTGTTAA

mRNA sequence

ATGGCGCCAAAGGCAGATAAGAAACCCGCCGAGAAGAAGCCAGCCGCTGAAAAGCCGGCCGAGGAGAAGAAATCTGTCGCGGAGAAAGCTCCGGCGGAGAAAAAGCCCAAGGCTGGAAAGAAGCTTCCGAAGGAAGGCGGCGCCGCTGCTGCTGGAGATAAGAAGAAGAAGAGGTCGAAGAAGAGCGTAGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAAGTTCATCCAGACATCGGTATTTCCAGCAAGGCCATGGGTATCATGAACAGTTTCATCAACGATATCTTTGAGAAACTCGCTCAGGAGTCATCTAAGTTGGCTCGCTACAACAAGAAACCTACCATAACTTCAAGGGAGATCCAGACAGCCGTCAGGCTTGTTCTTCCCGGTGAGTTGGCCAAGCACGCCGTGTCTGAGGGTACGAAGGCAGTAACTAAGTTCACAACACGAGATGAATTTGGCTACACAATACAAGAAAGTGCTGATGCTGCTACTGCCGGCTGCCATTTGAAGACTTGTTGGGTACTCAAAAAAACGTGGCAAGCTGATATAAATGAAACAGAGAAGAATCTTCCTCAGGCAGTTTGTTAA

Coding sequence (CDS)

ATGGCGCCAAAGGCAGATAAGAAACCCGCCGAGAAGAAGCCAGCCGCTGAAAAGCCGGCCGAGGAGAAGAAATCTGTCGCGGAGAAAGCTCCGGCGGAGAAAAAGCCCAAGGCTGGAAAGAAGCTTCCGAAGGAAGGCGGCGCCGCTGCTGCTGGAGATAAGAAGAAGAAGAGGTCGAAGAAGAGCGTAGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAAGTTCATCCAGACATCGGTATTTCCAGCAAGGCCATGGGTATCATGAACAGTTTCATCAACGATATCTTTGAGAAACTCGCTCAGGAGTCATCTAAGTTGGCTCGCTACAACAAGAAACCTACCATAACTTCAAGGGAGATCCAGACAGCCGTCAGGCTTGTTCTTCCCGGTGAGTTGGCCAAGCACGCCGTGTCTGAGGGTACGAAGGCAGTAACTAAGTTCACAACACGAGATGAATTTGGCTACACAATACAAGAAAGTGCTGATGCTGCTACTGCCGGCTGCCATTTGAAGACTTGTTGGGTACTCAAAAAAACGTGGCAAGCTGATATAAATGAAACAGAGAAGAATCTTCCTCAGGCAGTTTGTTAA

Protein sequence

MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTTRDEFGYTIQESADAATAGCHLKTCWVLKKTWQADINETEKNLPQAVC

Homology

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BLAST of CmoCh20G004600 vs. ExPASy Swiss-Prot
Match: O22582 (Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3)

HSP 1 Score: 244.2 bits (622), Expect = 1.2e-63
Identity = 140/152 (92.11%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAPKA+KKPAEK     KPAEEKK+VAEKAPAEKKPKAGKKLPKEGG AAAGDKKKKR K
Sbjct: 1   MAPKAEKKPAEK-----KPAEEKKAVAEKAPAEKKPKAGKKLPKEGG-AAAGDKKKKRVK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTT 153
           REIQTAVRLVLPGELAKHAVSEGTKAVTKFT+
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 146

[Close]

BLAST of CmoCh20G004600 vs. ExPASy Swiss-Prot
Match: P40283 (Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 242.3 bits (617), Expect = 4.7e-63
Identity = 139/152 (91.45%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAPKA+KKPAEKKPA+EKP EE KS AEKAPAEKKPKAGKKLPKE G  A GDKKKK  K
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEE-KSKAEKAPAEKKPKAGKKLPKEAG--AGGDKKKKMKK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTT 153
           REIQTAVRLVLPGELAKHAVSEGTKAVTKFT+
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 149

[Close]

BLAST of CmoCh20G004600 vs. ExPASy Swiss-Prot
Match: O23629 (Histone H2B.6 OS=Arabidopsis thaliana OX=3702 GN=H2B PE=1 SV=3)

HSP 1 Score: 241.5 bits (615), Expect = 8.1e-63
Identity = 139/152 (91.45%), Postives = 142/152 (93.42%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAP+A+KKPAEKKPAAEKP EE KS AEKAPAEKKPKAGKKLPKE G  A GDKKKK  K
Sbjct: 1   MAPRAEKKPAEKKPAAEKPVEE-KSKAEKAPAEKKPKAGKKLPKEAG--AGGDKKKKMKK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTT 153
           REIQTAVRLVLPGELAKHAVSEGTKAVTKFT+
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 149

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BLAST of CmoCh20G004600 vs. ExPASy Swiss-Prot
Match: Q1S9I9 (Probable histone H2B.1 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 241.1 bits (614), Expect = 1.1e-62
Identity = 138/152 (90.79%), Postives = 144/152 (94.74%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAPK +KKPAEKKPA EK    K +VAEKAPAEKKPKAGKKLPKEGG +AAG+KKKKRSK
Sbjct: 1   MAPKGEKKPAEKKPAEEK----KSTVAEKAPAEKKPKAGKKLPKEGG-SAAGEKKKKRSK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTT 153
           REIQTAVRLVLPGELAKHAVSEGTKAVTKFT+
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 147

[Close]

BLAST of CmoCh20G004600 vs. ExPASy Swiss-Prot
Match: Q1SWQ1 (Probable histone H2B.2 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 237.3 bits (604), Expect = 1.5e-61
Identity = 136/152 (89.47%), Postives = 142/152 (93.42%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAPK +KKPAEKKPA EK    K +VAEKAPAEKKPKAGKKLPKEGG +AAG+KKKKRSK
Sbjct: 1   MAPKGEKKPAEKKPAEEK----KSTVAEKAPAEKKPKAGKKLPKEGG-SAAGEKKKKRSK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKL QESS+LARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLTQESSRLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTT 153
           REIQTAVRLVLPGELAKH VSEGTKAVTKFT+
Sbjct: 121 REIQTAVRLVLPGELAKHDVSEGTKAVTKFTS 147

[Close]

BLAST of CmoCh20G004600 vs. ExPASy TrEMBL
Match: A0A6J1FVH6 (Histone H2B OS=Cucurbita moschata OX=3662 GN=LOC111448469 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 4.6e-69
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK
Sbjct: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFT 152
           REIQTAVRLVLPGELAKHAVSEGTKAVTKFT
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFT 151

[Close]

BLAST of CmoCh20G004600 vs. ExPASy TrEMBL
Match: A0A6J1JHJ9 (Histone H2B OS=Cucurbita maxima OX=3661 GN=LOC111484551 PE=3 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 1.0e-68
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAA+GDKKKKRSK
Sbjct: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAASGDKKKKRSK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFT 152
           REIQTAVRLVLPGELAKHAVSEGTKAVTKFT
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFT 151

[Close]

BLAST of CmoCh20G004600 vs. ExPASy TrEMBL
Match: A0A0A0KHC9 (Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_6G193620 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.8e-66
Identity = 147/152 (96.71%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAPKADKKPAEKKPA+EKPAEEKK+VAEKAPAEKKPKAGKKLPKEGG AAAGDKKKKR+K
Sbjct: 1   MAPKADKKPAEKKPASEKPAEEKKTVAEKAPAEKKPKAGKKLPKEGG-AAAGDKKKKRTK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTT 153
           REIQTAVRLVLPGELAKHAVSEGTKAVTKFT+
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 151

[Close]

BLAST of CmoCh20G004600 vs. ExPASy TrEMBL
Match: A0A2G5CM59 (Histone H2B OS=Aquilegia coerulea OX=218851 GN=AQUCO_04500159v1 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 4.8e-66
Identity = 144/152 (94.74%), Postives = 149/152 (98.03%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAPKA+KKPAEKKPAAEKP EEKK VAEK PAEKKPKAGKKLPKEGGAAA+GDKKKKRSK
Sbjct: 1   MAPKAEKKPAEKKPAAEKPTEEKKVVAEKGPAEKKPKAGKKLPKEGGAAASGDKKKKRSK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           K+VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITS
Sbjct: 61  KNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTT 153
           REIQTAVRLVLPGELAKHAVSEGTKAVTKFT+
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 152

[Close]

BLAST of CmoCh20G004600 vs. ExPASy TrEMBL
Match: A0A6J1G728 (Histone H2B OS=Cucurbita moschata OX=3662 GN=LOC111451349 PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 8.1e-66
Identity = 147/152 (96.71%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAPKA+KKPAEK+PAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAA  DKKKKRSK
Sbjct: 1   MAPKAEKKPAEKRPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAV-DKKKKRSK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTT 153
           REIQTAVRLVLPGELAKHAVSEGTKAVTKFT+
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 151

[Close]

BLAST of CmoCh20G004600 vs. NCBI nr
Match: KAG7010568.1 (Histone H2B.6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 327.4 bits (838), Expect = 8.5e-86
Identity = 180/197 (91.37%), Postives = 181/197 (91.88%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK
Sbjct: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTTRDEFGYTIQESADAATAGCHLKTCWVLK 180
           REIQTAVRLVLPGELAKHAVSEGTKAVTKFT            A AATAGCHLKTCW+LK
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTK--------SAGAGAATAGCHLKTCWILK 180

Query: 181 KTWQADINETEKNLPQA 198
           KTWQ D NET KNLPQA
Sbjct: 181 KTWQRDTNETGKNLPQA 189

[Close]

BLAST of CmoCh20G004600 vs. NCBI nr
Match: KAG6570724.1 (Histone H2B.6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 308.1 bits (788), Expect = 5.4e-80
Identity = 175/209 (83.73%), Postives = 178/209 (85.17%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK
Sbjct: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAV--------TKFTTRDEFGYTIQES--ADAATAG 180
           REIQTAVRLVLP        SE    +             RDEFGYTIQES  A AATAG
Sbjct: 121 REIQTAVRLVLPENYLADLRSEIVDLLPFDLADRPVICQARDEFGYTIQESAGAGAATAG 180

Query: 181 CHLKTCWVLKKTWQADINETEKNLPQAVC 200
           CHLKTCW+LK+TWQ D NET KNLPQAVC
Sbjct: 181 CHLKTCWILKETWQRDTNETGKNLPQAVC 209

[Close]

BLAST of CmoCh20G004600 vs. NCBI nr
Match: XP_023512034.1 (histone H2B.11 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 270.8 bits (691), Expect = 9.5e-69
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK
Sbjct: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFT 152
           REIQTAVRLVLPGELAKHAVSEGTKAVTKFT
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFT 151

[Close]

BLAST of CmoCh20G004600 vs. NCBI nr
Match: XP_022943869.1 (histone H2B.11-like [Cucurbita moschata])

HSP 1 Score: 270.8 bits (691), Expect = 9.5e-69
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK
Sbjct: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFT 152
           REIQTAVRLVLPGELAKHAVSEGTKAVTKFT
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFT 151

[Close]

BLAST of CmoCh20G004600 vs. NCBI nr
Match: XP_022986974.1 (histone H2B.11-like [Cucurbita maxima])

HSP 1 Score: 269.6 bits (688), Expect = 2.1e-68
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAA+GDKKKKRSK
Sbjct: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAASGDKKKKRSK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFT 152
           REIQTAVRLVLPGELAKHAVSEGTKAVTKFT
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFT 151

[Close]

BLAST of CmoCh20G004600 vs. TAIR 10
Match: AT5G59910.1 (Histone superfamily protein )

HSP 1 Score: 242.3 bits (617), Expect = 3.4e-64
Identity = 139/152 (91.45%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAPKA+KKPAEKKPA+EKP EE KS AEKAPAEKKPKAGKKLPKE G  A GDKKKK  K
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEE-KSKAEKAPAEKKPKAGKKLPKEAG--AGGDKKKKMKK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTT 153
           REIQTAVRLVLPGELAKHAVSEGTKAVTKFT+
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 149

[Close]

BLAST of CmoCh20G004600 vs. TAIR 10
Match: AT3G45980.1 (Histone superfamily protein )

HSP 1 Score: 241.5 bits (615), Expect = 5.7e-64
Identity = 139/152 (91.45%), Postives = 142/152 (93.42%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAP+A+KKPAEKKPAAEKP EE KS AEKAPAEKKPKAGKKLPKE G  A GDKKKK  K
Sbjct: 1   MAPRAEKKPAEKKPAAEKPVEE-KSKAEKAPAEKKPKAGKKLPKEAG--AGGDKKKKMKK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTT 153
           REIQTAVRLVLPGELAKHAVSEGTKAVTKFT+
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 149

[Close]

BLAST of CmoCh20G004600 vs. TAIR 10
Match: AT1G07790.1 (Histone superfamily protein )

HSP 1 Score: 233.4 bits (594), Expect = 1.6e-61
Identity = 135/152 (88.82%), Postives = 142/152 (93.42%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAP+A+KKPAEKK AAE+P EE K+ AEKAPAEKKPKAGKKLP +     AGDKKKKRSK
Sbjct: 1   MAPRAEKKPAEKKTAAERPVEENKA-AEKAPAEKKPKAGKKLPPK----EAGDKKKKRSK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           K+VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS
Sbjct: 61  KNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTT 153
           REIQTAVRLVLPGELAKHAVSEGTKAVTKFT+
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 147

[Close]

BLAST of CmoCh20G004600 vs. TAIR 10
Match: AT3G46030.1 (Histone superfamily protein )

HSP 1 Score: 231.5 bits (589), Expect = 5.9e-61
Identity = 134/152 (88.16%), Postives = 137/152 (90.13%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAPKA+KKPAEKKP       E+KS AEKAPAEKKPKAGKKLPKE G  A GDKKKK  K
Sbjct: 1   MAPKAEKKPAEKKPV------EEKSKAEKAPAEKKPKAGKKLPKEAG--AGGDKKKKMKK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTT 153
           REIQTAVRLVLPGELAKHAVSEGTKAVTKFT+
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 144

[Close]

BLAST of CmoCh20G004600 vs. TAIR 10
Match: AT2G28720.1 (Histone superfamily protein )

HSP 1 Score: 229.9 bits (585), Expect = 1.7e-60
Identity = 134/152 (88.16%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAPKA KKPAEKKPA + PAEE+K VAEKAPAEKKPKAGKKLPKE       +KKKKR K
Sbjct: 1   MAPKAGKKPAEKKPAEKAPAEEEK-VAEKAPAEKKPKAGKKLPKE-AVTGGVEKKKKRVK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KS ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITS
Sbjct: 61  KSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTT 153
           REIQTAVRLVLPGELAKHAVSEGTKAVTKFT+
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 150

The following BLAST results are available for this feature:

BLAST of CmoCh20G004600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22582	1.2e-63	92.11	Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3	[more]
P40283	4.7e-63	91.45	Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5	[more]
O23629	8.1e-63	91.45	Histone H2B.6 OS=Arabidopsis thaliana OX=3702 GN=H2B PE=1 SV=3	[more]
Q1S9I9	1.1e-62	90.79	Probable histone H2B.1 OS=Medicago truncatula OX=3880 PE=3 SV=3	[more]
Q1SWQ1	1.5e-61	89.47	Probable histone H2B.2 OS=Medicago truncatula OX=3880 PE=3 SV=3	[more]

BLAST of CmoCh20G004600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FVH6	4.6e-69	100.00	Histone H2B OS=Cucurbita moschata OX=3662 GN=LOC111448469 PE=3 SV=1	[more]
A0A6J1JHJ9	1.0e-68	99.34	Histone H2B OS=Cucurbita maxima OX=3661 GN=LOC111484551 PE=3 SV=1	[more]
A0A0A0KHC9	2.8e-66	96.71	Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_6G193620 PE=3 SV=1	[more]
A0A2G5CM59	4.8e-66	94.74	Histone H2B OS=Aquilegia coerulea OX=218851 GN=AQUCO_04500159v1 PE=3 SV=1	[more]
A0A6J1G728	8.1e-66	96.71	Histone H2B OS=Cucurbita moschata OX=3662 GN=LOC111451349 PE=3 SV=1	[more]

BLAST of CmoCh20G004600 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7010568.1	8.5e-86	91.37	Histone H2B.6, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6570724.1	5.4e-80	83.73	Histone H2B.6, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023512034.1	9.5e-69	100.00	histone H2B.11 [Cucurbita pepo subsp. pepo]	[more]
XP_022943869.1	9.5e-69	100.00	histone H2B.11-like [Cucurbita moschata]	[more]
XP_022986974.1	2.1e-68	99.34	histone H2B.11-like [Cucurbita maxima]	[more]

BLAST of CmoCh20G004600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59910.1	3.4e-64	91.45	Histone superfamily protein	[more]
AT3G45980.1	5.7e-64	91.45	Histone superfamily protein	[more]
AT1G07790.1	1.6e-61	88.82	Histone superfamily protein	[more]
AT3G46030.1	5.9e-61	88.16	Histone superfamily protein	[more]
AT2G28720.1	1.7e-60	88.16	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 85..105 score: 75.74 coord: 66..84 score: 80.55 coord: 137..150 score: 92.65 coord: 124..137 score: 92.45 coord: 107..124 score: 76.51
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 56..152 e-value: 4.8E-73 score: 258.6
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 10..152
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 121..143
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 10..129 e-value: 2.0E-22 score: 80.0
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 26..153 e-value: 2.0E-59 score: 201.1
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 39..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..57
None	No IPR available	PANTHER	PTHR23428:SF282	HISTONE H2B	coord: 10..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G004600.1	CmoCh20G004600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity