CmoCh20G003840 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh20G003840
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr20: 1870661 .. 1870888 (+)
RNA-Seq ExpressionCmoCh20G003840
SyntenyCmoCh20G003840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCCGACAAACCAGAATCGCCCGCTTCACGTTCAGAAACTTGAACTCCTCTTCGATGTCCTCAGGGATCGCCACGTGTGCCCTCCAGCTACTCGATAACGTCGATATTCCGTCCAACTTGTGGGAGAATCCCGATTTGATTATCCCACAAATGCTACAAAATTGCTGCCCGCAGAGGCTGGAATTACCATTTTGCCCCAAATCGCATAAAAACGTCGCACAGTGA

mRNA sequence

ATGACCCGACAAACCAGAATCGCCCGCTTCACGTTCAGAAACTTGAACTCCTCTTCGATGTCCTCAGGGATCGCCACGTGTGCCCTCCAGCTACTCGATAACGTCGATATTCCGTCCAACTTGTGGGAGAATCCCGATTTGATTATCCCACAAATGCTACAAAATTGCTGCCCGCAGAGGCTGGAATTACCATTTTGCCCCAAATCGCATAAAAACGTCGCACAGTGA

Coding sequence (CDS)

ATGACCCGACAAACCAGAATCGCCCGCTTCACGTTCAGAAACTTGAACTCCTCTTCGATGTCCTCAGGGATCGCCACGTGTGCCCTCCAGCTACTCGATAACGTCGATATTCCGTCCAACTTGTGGGAGAATCCCGATTTGATTATCCCACAAATGCTACAAAATTGCTGCCCGCAGAGGCTGGAATTACCATTTTGCCCCAAATCGCATAAAAACGTCGCACAGTGA

Protein sequence

MTRQTRIARFTFRNLNSSSMSSGIATCALQLLDNVDIPSNLWENPDLIIPQMLQNCCPQRLELPFCPKSHKNVAQ
Homology
BLAST of CmoCh20G003840 vs. ExPASy TrEMBL
Match: A0A0A0KH58 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G187400 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.3e-27
Identity = 64/74 (86.49%), Postives = 67/74 (90.54%), Query Frame = 0

Query: 2   TRQTRIARFTFRNLNSSSMSSGIATCALQLLDNVDIPSNLWENPDLIIPQMLQNCCPQRL 61
           TRQT+IARFT RNLNSSSMSSGIATCALQL   V+IPSNL ENPDLIIPQ+LQNCCPQ L
Sbjct: 54  TRQTKIARFTLRNLNSSSMSSGIATCALQLFATVEIPSNLCENPDLIIPQILQNCCPQIL 113

Query: 62  ELPFCPKSHKNVAQ 76
           ELPFCPKSHKNV Q
Sbjct: 114 ELPFCPKSHKNVEQ 127

BLAST of CmoCh20G003840 vs. ExPASy TrEMBL
Match: A0A2P2J653 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.4e-10
Identity = 37/50 (74.00%), Postives = 41/50 (82.00%), Query Frame = 0

Query: 7  IARFTFRNLNSSSMSSGIATCALQLLDNVDIPSNLWENPDLIIPQMLQNC 57
          +ARFTF NLNSSS+SSGIA CALQL D V+IPS+  E PDLIIPQ LQ C
Sbjct: 1  MARFTFMNLNSSSISSGIAACALQLADRVEIPSSFGEKPDLIIPQTLQYC 50

BLAST of CmoCh20G003840 vs. ExPASy TrEMBL
Match: A0A1U8QA87 (uncharacterized protein LOC109115428 OS=Nelumbo nucifera OX=4432 GN=LOC109115428 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.4e-09
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 0

Query: 2   TRQTRIARFTFRNLNSSSMSSGIATCALQLLDNVDIPSNLWENPDLIIPQML 54
           TR T +ARFTF  +NSSS+SSG A CALQLLD+V++PS L ENPDL+IPQ+L
Sbjct: 63  TRHTSMARFTFVKVNSSSISSGSAMCALQLLDSVNMPSILAENPDLMIPQIL 114

BLAST of CmoCh20G003840 vs. NCBI nr
Match: XP_019054995.1 (PREDICTED: uncharacterized protein LOC109115428 [Nelumbo nucifera])

HSP 1 Score: 70.5 bits (171), Expect = 7.1e-09
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 0

Query: 2   TRQTRIARFTFRNLNSSSMSSGIATCALQLLDNVDIPSNLWENPDLIIPQML 54
           TR T +ARFTF  +NSSS+SSG A CALQLLD+V++PS L ENPDL+IPQ+L
Sbjct: 63  TRHTSMARFTFVKVNSSSISSGSAMCALQLLDSVNMPSILAENPDLMIPQIL 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KH581.3e-2786.49Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G187400 PE=4 SV=1[more]
A0A2P2J6531.4e-1074.00Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
A0A1U8QA873.4e-0969.23uncharacterized protein LOC109115428 OS=Nelumbo nucifera OX=4432 GN=LOC109115428... [more]
Match NameE-valueIdentityDescription
XP_019054995.17.1e-0969.23PREDICTED: uncharacterized protein LOC109115428 [Nelumbo nucifera][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G003840.1CmoCh20G003840.1mRNA