CmoCh19G006880 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh19G006880
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein RADIALIS-like 3
Location	Cmo_Chr19: 7277180 .. 7277781 (-)
RNA-Seq Expression	CmoCh19G006880
Synteny	CmoCh19G006880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATACACATATAAATCACTCTCATTTCTCCATTGGATCTCAACCAAAACAACCAAAACCCCATCTCCAAATTTTTCTTCTTTTCTTCGCCAATGGCTTCGAGCTCTTTAAAACAACAACGTCCCGAGGCGACATGGACAGCCAAGCAAAACAAGCTGTTTGAGAAGGCGTTGGCTTTGTACGACAAAGAGACGCCTGAGCGATGGCACAATATCGCCATGGCAGTCGGTGGGAAGTCGGCCGACGAAGTTAAAAGACATTACGAGATTCTCTTGGAAGATCTCCTGCGGATCGAGTCGGGCCGTGTTCCTATTCCAAATTACAGAGGCGTCCACAATGGAGATGAAGAGTTGAGGTTAGTGAAGTTGTTCAAAGATTTTTTTCCCTCTTTATTTTAATTTTTGTCTTGTTTTTTTTTTTTTTTTTATTACCAATTTTGGGTACATGTTTATGTGGTTAATATTGTGATTAGGTTAAGTTTTTTATATGGTTGGTGGATATTTGTGAGACTTTGACTTATTAGAGTATTTTGTTGGTTGAATTTATTGTAATTTATTGGCTAGTTTGTGACCTATTGTCTAATCTAATTTTAAGTAGGTATTAA

mRNA sequence

ATACACATATAAATCACTCTCATTTCTCCATTGGATCTCAACCAAAACAACCAAAACCCCATCTCCAAATTTTTCTTCTTTTCTTCGCCAATGGCTTCGAGCTCTTTAAAACAACAACGTCCCGAGGCGACATGGACAGCCAAGCAAAACAAGCTGTTTGAGAAGGCGTTGGCTTTGTACGACAAAGAGACGCCTGAGCGATGGCACAATATCGCCATGGCAGTCGGTGGGAAGTCGGCCGACGAAGTTAAAAGACATTACGAGATTCTCTTGGAAGATCTCCTGCGGATCGAGTCGGGCCGTGTTCCTATTCCAAATTACAGAGGCGTCCACAATGGAGATGAAGAGTTGAGGTATTAA

Coding sequence (CDS)

ATGGCTTCGAGCTCTTTAAAACAACAACGTCCCGAGGCGACATGGACAGCCAAGCAAAACAAGCTGTTTGAGAAGGCGTTGGCTTTGTACGACAAAGAGACGCCTGAGCGATGGCACAATATCGCCATGGCAGTCGGTGGGAAGTCGGCCGACGAAGTTAAAAGACATTACGAGATTCTCTTGGAAGATCTCCTGCGGATCGAGTCGGGCCGTGTTCCTATTCCAAATTACAGAGGCGTCCACAATGGAGATGAAGAGTTGAGGTATTAA

Protein sequence

MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPIPNYRGVHNGDEELRY

Homology

[Close]

BLAST of CmoCh19G006880 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.3e-24
Identity = 50/78 (64.10%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RWHN+A AVGGK+ +EVKRHY+IL
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLLRIESGRVPIPNYR 79
          +EDL+ IE+GRVP+PNY+
Sbjct: 61 VEDLINIETGRVPLPNYK 75

[Close]

BLAST of CmoCh19G006880 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.6e-23
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MAS+S+      A+WT K+NKLFE+ALA YD++TP+RWHN+A AVGGKSA+EV+RHYE+L
Sbjct: 1  MASNSMSS---SASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELL 60

Query: 61 LEDLLRIESGRVPIPNYRGVHN 83
          + D+  IESGR P PNYR   N
Sbjct: 61 IRDVNDIESGRYPHPNYRSNGN 79

[Close]

BLAST of CmoCh19G006880 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.8e-23
Identity = 50/85 (58.82%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MASSS+      ++WT+KQNK+FE+ALA+YDK+TP+RW N+A AVG KSA+EVKRHY+IL
Sbjct: 1  MASSSMSS---SSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDIL 60

Query: 61 LEDLLRIESGRVPIPNYRGVHNGDE 86
          +EDL+ IE   VP+P Y+ V  G +
Sbjct: 61 VEDLMNIEQDLVPLPKYKTVDVGSK 82

[Close]

BLAST of CmoCh19G006880 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.4e-22
Identity = 51/86 (59.30%), Postives = 64/86 (74.42%), Query Frame = 0


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MASSS+  Q    +WTAKQNK FE+ALA YD++TP RW N+A  VGGK+ +EVKRHYE+L
Sbjct: 1  MASSSMSSQ-SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELL 60

Query: 61 LEDLLRIESGRVPIPNYR---GVHNG 84
          ++D+  IE+G VP PNYR   G  NG
Sbjct: 61 VQDINSIENGHVPFPNYRTSGGCTNG 85

[Close]

BLAST of CmoCh19G006880 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.0e-20
Identity = 42/64 (65.62%), Postives = 56/64 (87.50%), Query Frame = 0


Query: 15 WTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEILLEDLLRIESGRVPI 74
          W+AK+NK FE+ALA+YDK+TP+RW N+A AV G++ +EVK+HYEIL+ED+  IESG+VP 
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF 70

Query: 75 PNYR 79
          PNYR
Sbjct: 71 PNYR 74

[Close]

BLAST of CmoCh19G006880 vs. ExPASy TrEMBL
Match: A0A6J1GKW1 (protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111455298 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.3e-42
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLLRIESGRVPIPNYRGVHNGDEELR 89
          LEDLLRIESGRVPIPNYRGVHNGDEELR
Sbjct: 61 LEDLLRIESGRVPIPNYRGVHNGDEELR 88

[Close]

BLAST of CmoCh19G006880 vs. ExPASy TrEMBL
Match: A0A6J1ICR6 (protein RADIALIS-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111474479 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 9.0e-41
Identity = 85/88 (96.59%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MASSSLKQQRPEATWTAKQNKLFEKALALYDKE PERWHNIAMAVGGKSADEVKRHYEIL
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKEMPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLLRIESGRVPIPNYRGVHNGDEELR 89
          LEDL RIESGRVPIPNYRG HNGDEELR
Sbjct: 61 LEDLQRIESGRVPIPNYRGAHNGDEELR 88

[Close]

BLAST of CmoCh19G006880 vs. ExPASy TrEMBL
Match: A0A1S3BHB0 (protein RADIALIS-like 3 OS=Cucumis melo OX=3656 GN=LOC103489572 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.5e-35
Identity = 77/88 (87.50%), Postives = 80/88 (90.91%), Query Frame = 0


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MASSSLKQQRPE TWT KQNKLFEKALALYDK+TPERW NIA AVGGKSADEV+RHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLLRIESGRVPIPNYRGVHNGDEELR 89
          LEDL +IESGRVPIPNYRG  N DEELR
Sbjct: 61 LEDLRQIESGRVPIPNYRGTSNRDEELR 88

[Close]

BLAST of CmoCh19G006880 vs. ExPASy TrEMBL
Match: A0A5D3DF44 (Protein RADIALIS-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G00100 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.3e-35
Identity = 76/88 (86.36%), Postives = 80/88 (90.91%), Query Frame = 0


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MASSSLKQQRPE TWT KQNKLFEKALALYDK+TPERW NIA AVGGKSA+EV+RHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEIL 60

Query: 61 LEDLLRIESGRVPIPNYRGVHNGDEELR 89
          LEDL +IESGRVPIPNYRG  N DEELR
Sbjct: 61 LEDLRQIESGRVPIPNYRGTSNRDEELR 88

[Close]

BLAST of CmoCh19G006880 vs. ExPASy TrEMBL
Match: A0A0A0K2A2 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G000020 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.3e-35
Identity = 77/88 (87.50%), Postives = 79/88 (89.77%), Query Frame = 0


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MASSSLKQQRPE TWT KQNKLFEKALALYDK+TPERW NIA AVGGKSADEV+RHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLLRIESGRVPIPNYRGVHNGDEELR 89
          LEDL RIESGRVPIPNYR   N DEELR
Sbjct: 61 LEDLRRIESGRVPIPNYRRTSNRDEELR 88

[Close]

BLAST of CmoCh19G006880 vs. NCBI nr
Match: XP_022952671.1 (protein RADIALIS-like 3 [Cucurbita moschata])

HSP 1 Score: 181.8 bits (460), Expect = 2.6e-42
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLLRIESGRVPIPNYRGVHNGDEELR 89
          LEDLLRIESGRVPIPNYRGVHNGDEELR
Sbjct: 61 LEDLLRIESGRVPIPNYRGVHNGDEELR 88

[Close]

BLAST of CmoCh19G006880 vs. NCBI nr
Match: XP_023554816.1 (protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 177.9 bits (450), Expect = 3.7e-41
Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLLRIESGRVPIPNYRGVHNGDEELR 89
          LEDL RIESGRVPIPNYRG HNGDEELR
Sbjct: 61 LEDLRRIESGRVPIPNYRGAHNGDEELR 88

[Close]

BLAST of CmoCh19G006880 vs. NCBI nr
Match: KAG6572047.1 (Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 176.4 bits (446), Expect = 1.1e-40
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MA+SSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL
Sbjct: 1  MATSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLLRIESGRVPIPNYRGVHNGDEELR 89
          LEDL RIESG VPIPNYRGVHNGDEELR
Sbjct: 61 LEDLRRIESGHVPIPNYRGVHNGDEELR 88

[Close]

BLAST of CmoCh19G006880 vs. NCBI nr
Match: XP_022975322.1 (protein RADIALIS-like 3 [Cucurbita maxima])

HSP 1 Score: 175.6 bits (444), Expect = 1.9e-40
Identity = 85/88 (96.59%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MASSSLKQQRPEATWTAKQNKLFEKALALYDKE PERWHNIAMAVGGKSADEVKRHYEIL
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKEMPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLLRIESGRVPIPNYRGVHNGDEELR 89
          LEDL RIESGRVPIPNYRG HNGDEELR
Sbjct: 61 LEDLQRIESGRVPIPNYRGAHNGDEELR 88

[Close]

BLAST of CmoCh19G006880 vs. NCBI nr
Match: XP_038888996.1 (protein RADIALIS-like 3 isoform X2 [Benincasa hispida])

HSP 1 Score: 166.4 bits (420), Expect = 1.1e-37
Identity = 81/88 (92.05%), Postives = 82/88 (93.18%), Query Frame = 0


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MASSSLKQQRPE TWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKS DEVKRHYE+L
Sbjct: 1  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSTDEVKRHYEVL 60

Query: 61 LEDLLRIESGRVPIPNYRGVHNGDEELR 89
          LEDL RIESGRVPIPNYRG  N DEELR
Sbjct: 61 LEDLRRIESGRVPIPNYRGGGNRDEELR 88

[Close]

BLAST of CmoCh19G006880 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 112.1 bits (279), Expect = 2.4e-25
Identity = 50/78 (64.10%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RWHN+A AVGGK+ +EVKRHY+IL
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLLRIESGRVPIPNYR 79
          +EDL+ IE+GRVP+PNY+
Sbjct: 61 VEDLINIETGRVPLPNYK 75

[Close]

BLAST of CmoCh19G006880 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 112.1 bits (279), Expect = 2.4e-25
Identity = 50/78 (64.10%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RWHN+A AVGGK+ +EVKRHY+IL
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLLRIESGRVPIPNYR 79
          +EDL+ IE+GRVP+PNY+
Sbjct: 61 VEDLINIETGRVPLPNYK 75

[Close]

BLAST of CmoCh19G006880 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 109.0 bits (271), Expect = 2.0e-24
Identity = 50/85 (58.82%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MASSS+      ++WT+KQNK+FE+ALA+YDK+TP+RW N+A AVG KSA+EVKRHY+IL
Sbjct: 1  MASSSMSS---SSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDIL 60

Query: 61 LEDLLRIESGRVPIPNYRGVHNGDE 86
          +EDL+ IE   VP+P Y+ V  G +
Sbjct: 61 VEDLMNIEQDLVPLPKYKTVDVGSK 82

[Close]

BLAST of CmoCh19G006880 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 106.7 bits (265), Expect = 9.9e-24
Identity = 51/86 (59.30%), Postives = 64/86 (74.42%), Query Frame = 0


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MASSS+  Q    +WTAKQNK FE+ALA YD++TP RW N+A  VGGK+ +EVKRHYE+L
Sbjct: 1  MASSSMSSQ-SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELL 60

Query: 61 LEDLLRIESGRVPIPNYR---GVHNG 84
          ++D+  IE+G VP PNYR   G  NG
Sbjct: 61 VQDINSIENGHVPFPNYRTSGGCTNG 85

[Close]

BLAST of CmoCh19G006880 vs. TAIR 10
Match: AT2G18328.1 (RAD-like 4 )

HSP 1 Score: 97.4 bits (241), Expect = 6.0e-21
Identity = 47/81 (58.02%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60
          MASSS+      ++WTA+++K FE ALA +DK+TP+RW  IA AVGGKS +EVKRHYE+L
Sbjct: 1  MASSSMS----TSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELL 60

Query: 61 LEDLLRIESGRVPIPNYRGVH 82
          L D+  IESGR P P YR  +
Sbjct: 61 LRDVNDIESGRYPQPRYRNTN 77

The following BLAST results are available for this feature:

BLAST of CmoCh19G006880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1A173	3.3e-24	64.10	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
Q6NNN0	1.6e-23	62.20	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q8GW75	2.8e-23	58.82	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
F4JVB8	1.4e-22	59.30	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q58FS3	1.0e-20	65.63	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]

BLAST of CmoCh19G006880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GKW1	1.3e-42	100.00	protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111455298 PE=4 SV=1	[more]
A0A6J1ICR6	9.0e-41	96.59	protein RADIALIS-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111474479 PE=4 SV=1	[more]
A0A1S3BHB0	1.5e-35	87.50	protein RADIALIS-like 3 OS=Cucumis melo OX=3656 GN=LOC103489572 PE=4 SV=1	[more]
A0A5D3DF44	4.3e-35	86.36	Protein RADIALIS-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0K2A2	4.3e-35	87.50	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G000020 PE=4 S...	[more]

BLAST of CmoCh19G006880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952671.1	2.6e-42	100.00	protein RADIALIS-like 3 [Cucurbita moschata]	[more]
XP_023554816.1	3.7e-41	97.73	protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo]	[more]
KAG6572047.1	1.1e-40	96.59	Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022975322.1	1.9e-40	96.59	protein RADIALIS-like 3 [Cucurbita maxima]	[more]
XP_038888996.1	1.1e-37	92.05	protein RADIALIS-like 3 isoform X2 [Benincasa hispida]	[more]

BLAST of CmoCh19G006880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75250.1	2.4e-25	64.10	RAD-like 6	[more]
AT1G75250.2	2.4e-25	64.10	RAD-like 6	[more]
AT1G19510.1	2.0e-24	58.82	RAD-like 5	[more]
AT4G39250.1	9.9e-24	59.30	RAD-like 1	[more]
AT2G18328.1	6.0e-21	58.02	RAD-like 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 11..63 e-value: 3.3E-7 score: 40.0
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 7..61 score: 6.365003
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 14..61 e-value: 2.21356E-6 score: 38.7106
None	No IPR available	GENE3D	1.10.10.60		coord: 7..74 e-value: 4.1E-22 score: 79.7
None	No IPR available	PANTHER	PTHR43952:SF29	PROTEIN RADIALIS-LIKE 3	coord: 1..78
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..78
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 14..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G006880.1	CmoCh19G006880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003723	RNA binding