CmoCh19G006480 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh19G006480
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	cytochrome b6f complex subunit (petM), putative
Location	Cmo_Chr19: 6999892 .. 7002375 (+)
RNA-Seq Expression	CmoCh19G006480
Synteny	CmoCh19G006480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCTACACCCTCCGCTACCCTCTCGCCGCCCATATCCACCGCCGCCCCCATCGCCGCCGGCTCTAGGCGGCAGAGGAACACCAATGTCCATTACATCACTGGCCTCAACTCCTTTAGTGGCTTGAAAGCTCACAACAATATCACCTCCTTGGGCCTTCCCGTTTGTGCCGATCAGTCATTTGCTAGCATTGTGAGTTCTTTGAAATACCCATCAAAGGGAAAAGGCAAAAACGGTGGTGGGGCTCTCTCTTCTACCTGTAATGCCGCCGGTGAGATTTTCAGGATCGCCGCCATTATCAATGGGCTTGTTCTTGTTGGAGTGGCGGTGGGGTTTGTTCTTCTCAGGATTGAGGCATCTGTGGAGGAGGCTGAGTGAGTGAGAAGGTGCTATAATGTTAATGGTGATATTGTTGAATCATCGGAATCTGTAAGTTAATCTGTTACTTTTACTACTTATAACTCAATTGTTTCTATCAGTCAAAACTATTGACAACATTCATTTGGCCTCTTACACTTTCTCCCTTGCTTTCTGCTTTCAAAAGAATGGCAATGTAGTATGTTGTTCATCTGCTTTGATTGTTCTGCAACACGAAAATGCATATTCTTCTAAATTCTTGTAAGATCAACTAGTTTTAGGGCATGGTAGATTAGATTGCATGTTTAAAACCATTCAAGCTCGATATGATTGACCTTGTGGAGTGATTCGAGTCTCAAACAAGTGTTCTTCCCTTAAGATATTTGATCAACAAGGTGATCTGGATTTTACTTTCCCTTGGAGTGATTTTTTATCATCAGGGTTGAGTGTTCTTACCTTTTGTTAGCTAAAGACTAAGTTTCTTTGCGATTCTATGTAATTTAGGTTGCATGTTTAGAATCATTCAAGCTTGACATGATCGAACTTGCTTGTGGAGGGATCCGAGTCTCAACCAAATGTTCTTGTCTTGAGATATTTGATCAATAAAGTGATCTGGATTTTACTTTCGGAGTGATTTCTTATCATCAGGGCTGAGTGTTCTTACCTGTCATTAGCTAAAGACTAAGTTTCTTTGCAATTCTACGTAGTATTTAGAATCATTCAAACTTGACATGATCGAGCTTGCTTGTCGAAGGATTGGAGTCTCAACCAAATATTCTTGTCTTGAGATATTTGATCGATAAGGTGATCTAAATTTTGCTTTCCCTTCGAGTGATTTCTTATCATTAGGGTTAAATGTTCTTACCTTTCCTTAGCAAAGGTCTAAGTTTCTTTGCAATTCTATATAGTTTAGATTGCATGTCTAGAATCATTCAAGCTTGAGTTGATCGAGCTTGCTTGTGGAGTGATTGAGTCTCAACCAAATATTCTTGCCTTGAAATATTCGATCAACAAGGTAATCCGAATCTTAATTTCCTTATAGTGATTCCTTATCATGTTACGTGGGAGGTAGTAGTTAAGCTAGTCGAGTTGGGTGGCCTAGCCATAGGGAGCTTCAATTTACGTAATGAAGCTCTTCTAGCAAAATGGTTGCGACCCACGATCCCTCTAGAGGGTTTTCTTCACGTTCTTTCTTTTGTATGTTCTTTGTCCGTCTCCCACCCCAAATCACCTCTTCTTTCATCTAGGAGGTTAAAATCCATTTACATGGGAGAGTCAACACTATGAACCGTGTTCAAATACGTTCTTCGTGTTGTGTCGTATCAGCAGCGGTGTGTTCTTTGTAGGAATCATGCAGAGAATCAGTAAAAAAAAGTTCTTTCATACCATAAATGCTAGAATATCGAACAGTAAAAGAGATGAAAAGTAGGGCCTTAAAGGGAAGGATTTTTTCTTCGGAATCGGGTTTCGATAACGCTCGCATCTGCAGGATTGGATCAGTTCTTCATGTGTGATTCTTACTGAATCGGGTTCATCCCGGAAATCAGCTTCAGTAGCAAGTTTCAGTCTGCAAAACATACAATAAAGTTCTAGATGTATTTATTCTGATTCTTGGTTTTAACATCGGCGATATCACAGCCTTTTTAGTCTTTATAGGATATTGTCTCGACCGTTTTGACCAATTGATTCACCTCATTCATGACCATTCTCGACATCTTTCACGCTTCTCAAAGCTGCTCGTAGTCCGATAGCTGGATCTTTGGGGTGCAAGTATCAGATTTTGTACATTTGAGGCTTATAAATCCAGTAAATATGAGAATCCCTGCTAGTATCCAACTGAATTGCAGGTTAGCGAGCGCTCGTGCCCTCATATCAGCTTCCTTGGAGGCACAAATCACTGCTCCGAGCATTTCGTCTTTACCGTTCTCCACGATCCTCATGCTGCAGCCCTTAGGAACCAAGTTTGGAACCCATAGCATGAACCCCATGTTCATGAACCAACACCCTTGCAAAACAACCAATAACGAAAGAACAATGGCTGCTGGAAAGCAGGTAGGACAACAAGCAGCTACTATTACCGACACGAGCGATGCAAACACAATGAGCTGCAAGAGCCAATGGTAA

mRNA sequence

ATGGCGGCTACACCCTCCGCTACCCTCTCGCCGCCCATATCCACCGCCGCCCCCATCGCCGCCGGCTCTAGGCGGCAGAGGAACACCAATGTCCATTACATCACTGGCCTCAACTCCTTTAGTGGCTTGAAAGCTCACAACAATATCACCTCCTTGGGCCTTCCCGTTTGTGCCGATCAGTCATTTGCTAGCATTGTGAGTTCTTTGAAATACCCATCAAAGGGAAAAGGCAAAAACGGTGGTGGGGCTCTCTCTTCTACCTGTAATGCCGCCGGTGAGATTTTCAGGATCGCCGCCATTATCAATGGGCTTGTTCTTGTTGGAGTGGCGGTGGGGTTTGTTCTTCTCAGGATTGAGGCATCTGTGGAGGAGGCTGAGTTAGCGAGCGCTCGTGCCCTCATATCAGCTTCCTTGGAGGCACAAATCACTGCTCCGAGCATTTCGTCTTTACCGTTCTCCACGATCCTCATGCTGCAGCCCTTAGGAACCAAGTTTGGAACCCATAGCATGAACCCCATGTTCATGAACCAACACCCTTGCAAAACAACCAATAACGAAAGAACAATGGCTGCTGGAAAGCAGGTAGGACAACAAGCAGCTACTATTACCGACACGAGCGATGCAAACACAATGAGCTGCAAGAGCCAATGGTAA

Coding sequence (CDS)

ATGGCGGCTACACCCTCCGCTACCCTCTCGCCGCCCATATCCACCGCCGCCCCCATCGCCGCCGGCTCTAGGCGGCAGAGGAACACCAATGTCCATTACATCACTGGCCTCAACTCCTTTAGTGGCTTGAAAGCTCACAACAATATCACCTCCTTGGGCCTTCCCGTTTGTGCCGATCAGTCATTTGCTAGCATTGTGAGTTCTTTGAAATACCCATCAAAGGGAAAAGGCAAAAACGGTGGTGGGGCTCTCTCTTCTACCTGTAATGCCGCCGGTGAGATTTTCAGGATCGCCGCCATTATCAATGGGCTTGTTCTTGTTGGAGTGGCGGTGGGGTTTGTTCTTCTCAGGATTGAGGCATCTGTGGAGGAGGCTGAGTTAGCGAGCGCTCGTGCCCTCATATCAGCTTCCTTGGAGGCACAAATCACTGCTCCGAGCATTTCGTCTTTACCGTTCTCCACGATCCTCATGCTGCAGCCCTTAGGAACCAAGTTTGGAACCCATAGCATGAACCCCATGTTCATGAACCAACACCCTTGCAAAACAACCAATAACGAAAGAACAATGGCTGCTGGAAAGCAGGTAGGACAACAAGCAGCTACTATTACCGACACGAGCGATGCAAACACAATGAGCTGCAAGAGCCAATGGTAA

Protein sequence

MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASVEEAELASARALISASLEAQITAPSISSLPFSTILMLQPLGTKFGTHSMNPMFMNQHPCKTTNNERTMAAGKQVGQQAATITDTSDANTMSCKSQW

Homology

[Close]

BLAST of CmoCh19G006480 vs. ExPASy Swiss-Prot
Match: P80883 (Cytochrome b6-f complex subunit 7 (Fragment) OS=Spinacia oleracea OX=3562 GN=petM PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.4e-07
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 89  NAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASVEE 125
           NAA EIFRIAA++NGL LVGVA+GFVLLRIEA+VEE
Sbjct: 1   NAAAEIFRIAAVMNGLTLVGVAIGFVLLRIEATVEE 36

[Close]

BLAST of CmoCh19G006480 vs. ExPASy TrEMBL
Match: A0A6J1GND2 (uncharacterized protein LOC111455503 OS=Cucurbita moschata OX=3662 GN=LOC111455503 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 8.9e-58
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQ 60
           MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQ
Sbjct: 1   MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQ 60

Query: 61  SFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA 120
           SFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA
Sbjct: 61  SFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA 120

Query: 121 SVEEAE 127
           SVEEAE
Sbjct: 121 SVEEAE 126

[Close]

BLAST of CmoCh19G006480 vs. ExPASy TrEMBL
Match: A0A6J1I5T0 (uncharacterized protein LOC111470941 OS=Cucurbita maxima OX=3661 GN=LOC111470941 PE=3 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 2.7e-54
Identity = 121/126 (96.03%), Postives = 122/126 (96.83%), Query Frame = 0


Query: 1   MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQ 60
           MAAT SATLSP ISTAAPIAAGSRRQRNTNVHYITGLNSF GLKAHNNI SLGLPVCADQ
Sbjct: 1   MAATASATLSPAISTAAPIAAGSRRQRNTNVHYITGLNSFGGLKAHNNIFSLGLPVCADQ 60

Query: 61  SFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA 120
           SFA+IVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA
Sbjct: 61  SFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA 120

Query: 121 SVEEAE 127
           SVEEAE
Sbjct: 121 SVEEAE 126

[Close]

BLAST of CmoCh19G006480 vs. ExPASy TrEMBL
Match: A0A1S3C0U4 (uncharacterized protein LOC103495201 OS=Cucumis melo OX=3656 GN=LOC103495201 PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 2.8e-51
Identity = 114/124 (91.94%), Postives = 117/124 (94.35%), Query Frame = 0


Query: 3   ATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSF 62
           AT SATLS  +STAAPIAAGSRRQR TNVHYITGLNSF GLKAHNN+ SLGLPVCADQSF
Sbjct: 2   ATASATLSTAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSF 61

Query: 63  ASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 122
           A IVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVL+GVAVGFVLLRIEASV
Sbjct: 62  AKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEASV 121

Query: 123 EEAE 127
           EEAE
Sbjct: 122 EEAE 125

[Close]

BLAST of CmoCh19G006480 vs. ExPASy TrEMBL
Match: A0A0A0K4W4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075020 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 1.5e-49
Identity = 110/124 (88.71%), Postives = 117/124 (94.35%), Query Frame = 0


Query: 3   ATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSF 62
           AT SATLS  +S+AAPI+AGSRRQR TN H+I+GLNSFSGLKAHNN+ SLGLPVCADQSF
Sbjct: 78  ATASATLSTAMSSAAPISAGSRRQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCADQSF 137

Query: 63  ASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 122
           A IVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVL+GVAVGFVLLRIEASV
Sbjct: 138 AKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEASV 197

Query: 123 EEAE 127
           EEAE
Sbjct: 198 EEAE 201

[Close]

BLAST of CmoCh19G006480 vs. ExPASy TrEMBL
Match: A0A6J1C3G5 (uncharacterized protein LOC111008007 OS=Momordica charantia OX=3673 GN=LOC111008007 PE=3 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 4.6e-46
Identity = 110/127 (86.61%), Postives = 114/127 (89.76%), Query Frame = 0


Query: 3   ATPSATLSPPISTAAPIAAGSRR-QRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQS 62
           AT SATLSP +STAAPIAAGSRR QR+ NVHYITGLNSF GLKAHNN+ SLGLP+C D S
Sbjct: 2   ATASATLSPAMSTAAPIAAGSRRSQRHHNVHYITGLNSFGGLKAHNNVVSLGLPLCPDHS 61

Query: 63  FASIVSSLKYPSKGKGKN--GGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIE 122
           FA IVSSLKYPSKGKGKN  GGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIE
Sbjct: 62  FAKIVSSLKYPSKGKGKNGGGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIE 121

Query: 123 ASVEEAE 127
           A VEE E
Sbjct: 122 AYVEETE 128

[Close]

BLAST of CmoCh19G006480 vs. NCBI nr
Match: XP_022952989.1 (uncharacterized protein LOC111455503 [Cucurbita moschata])

HSP 1 Score: 233.4 bits (594), Expect = 1.8e-57
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQ 60
           MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQ
Sbjct: 1   MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQ 60

Query: 61  SFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA 120
           SFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA
Sbjct: 61  SFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA 120

Query: 121 SVEEAE 127
           SVEEAE
Sbjct: 121 SVEEAE 126

[Close]

BLAST of CmoCh19G006480 vs. NCBI nr
Match: KAG6572003.1 (Cytochrome b6-f complex subunit 7, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011679.1 Cytochrome b6-f complex subunit 7, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 232.3 bits (591), Expect = 4.1e-57
Identity = 125/126 (99.21%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQ 60
           MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQ
Sbjct: 1   MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQ 60

Query: 61  SFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA 120
           SFA+IVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA
Sbjct: 61  SFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA 120

Query: 121 SVEEAE 127
           SVEEAE
Sbjct: 121 SVEEAE 126

[Close]

BLAST of CmoCh19G006480 vs. NCBI nr
Match: XP_023554105.1 (uncharacterized protein LOC111811473 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 223.0 bits (567), Expect = 2.5e-54
Identity = 121/126 (96.03%), Postives = 122/126 (96.83%), Query Frame = 0


Query: 1   MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQ 60
           MAAT SATLSPPISTAAPIAAGSRRQRN NVHYITGLNSF GLKAHNNI SLGLPVCADQ
Sbjct: 1   MAATASATLSPPISTAAPIAAGSRRQRNANVHYITGLNSFGGLKAHNNIFSLGLPVCADQ 60

Query: 61  SFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA 120
           SFA+IVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA
Sbjct: 61  SFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA 120

Query: 121 SVEEAE 127
           SVEEAE
Sbjct: 121 SVEEAE 126

[Close]

BLAST of CmoCh19G006480 vs. NCBI nr
Match: XP_022972366.1 (uncharacterized protein LOC111470941 [Cucurbita maxima])

HSP 1 Score: 221.9 bits (564), Expect = 5.5e-54
Identity = 121/126 (96.03%), Postives = 122/126 (96.83%), Query Frame = 0


Query: 1   MAATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQ 60
           MAAT SATLSP ISTAAPIAAGSRRQRNTNVHYITGLNSF GLKAHNNI SLGLPVCADQ
Sbjct: 1   MAATASATLSPAISTAAPIAAGSRRQRNTNVHYITGLNSFGGLKAHNNIFSLGLPVCADQ 60

Query: 61  SFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA 120
           SFA+IVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA
Sbjct: 61  SFANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA 120

Query: 121 SVEEAE 127
           SVEEAE
Sbjct: 121 SVEEAE 126

[Close]

BLAST of CmoCh19G006480 vs. NCBI nr
Match: XP_038887487.1 (uncharacterized protein LOC120077620 [Benincasa hispida])

HSP 1 Score: 212.2 bits (539), Expect = 4.4e-51
Identity = 113/124 (91.13%), Postives = 118/124 (95.16%), Query Frame = 0


Query: 3   ATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSF 62
           AT SATLSP + TAAPIAAGSRRQR TNVHYITGLNSF GLKAHNN+ SLGLPVCADQSF
Sbjct: 2   ATASATLSPAMPTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSF 61

Query: 63  ASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 122
           A+I+SSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVL+GVAVGFVLLRIEASV
Sbjct: 62  ANIMSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEASV 121

Query: 123 EEAE 127
           EEAE
Sbjct: 122 EEAE 125

[Close]

BLAST of CmoCh19G006480 vs. TAIR 10
Match: AT2G26500.2 (cytochrome b6f complex subunit (petM), putative )

HSP 1 Score: 111.7 bits (278), Expect = 7.5e-25
Identity = 72/127 (56.69%), Postives = 89/127 (70.08%), Query Frame = 0


Query: 2   AATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNN-ITSLGLPVCADQ 61
           AA P A +S   S     +  ++++    V YITGLNS+ GLKA NN + S+G P+C +Q
Sbjct: 4   AAAP-AVISWTRSGIVSKSGQTQKKSEMKVSYITGLNSYGGLKAQNNKVVSMGSPLCTEQ 63

Query: 62  SFASIVSSLKYPSKGKGKNG-GGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIE 121
            FA++V SL      KG+ G GGALS+TCNA GEIF+IAAI+N L LVGVAVGFVLLRIE
Sbjct: 64  CFANVVMSL------KGRRGNGGALSTTCNAVGEIFKIAAIMNALTLVGVAVGFVLLRIE 123

Query: 122 ASVEEAE 127
            SVEEAE
Sbjct: 124 TSVEEAE 123

[Close]

BLAST of CmoCh19G006480 vs. TAIR 10
Match: AT2G26500.1 (cytochrome b6f complex subunit (petM), putative )

HSP 1 Score: 111.7 bits (278), Expect = 7.5e-25
Identity = 72/127 (56.69%), Postives = 89/127 (70.08%), Query Frame = 0


Query: 2   AATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNN-ITSLGLPVCADQ 61
           AA P A +S   S     +  ++++    V YITGLNS+ GLKA NN + S+G P+C +Q
Sbjct: 4   AAAP-AVISWTRSGIVSKSGQTQKKSEMKVSYITGLNSYGGLKAQNNKVVSMGSPLCTEQ 63

Query: 62  SFASIVSSLKYPSKGKGKNG-GGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIE 121
            FA++V SL      KG+ G GGALS+TCNA GEIF+IAAI+N L LVGVAVGFVLLRIE
Sbjct: 64  CFANVVMSL------KGRRGNGGALSTTCNAVGEIFKIAAIMNALTLVGVAVGFVLLRIE 123

Query: 122 ASVEEAE 127
            SVEEAE
Sbjct: 124 TSVEEAE 123

[Close]

BLAST of CmoCh19G006480 vs. TAIR 10
Match: AT2G26500.3 (cytochrome b6f complex subunit (petM), putative )

HSP 1 Score: 56.2 bits (134), Expect = 3.7e-08
Identity = 47/126 (37.30%), Postives = 60/126 (47.62%), Query Frame = 0


Query: 2   AATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNN-ITSLGLPVCADQ 61
           AA P A +S   S     +  ++++    V YITGLNS+ GLKA NN + S+G P+C +Q
Sbjct: 4   AAAP-AVISWTRSGIVSKSGQTQKKSEMKVSYITGLNSYGGLKAQNNKVVSMGSPLCTEQ 63

Query: 62  SFASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA 121
            FA++V SLK                                     G  VGFVLLRIE 
Sbjct: 64  CFANVVMSLK-------------------------------------GRRVGFVLLRIET 91

Query: 122 SVEEAE 127
           SVEEAE
Sbjct: 124 SVEEAE 91

The following BLAST results are available for this feature:

BLAST of CmoCh19G006480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P80883	2.4e-07	83.33	Cytochrome b6-f complex subunit 7 (Fragment) OS=Spinacia oleracea OX=3562 GN=pet...	[more]

BLAST of CmoCh19G006480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GND2	8.9e-58	100.00	uncharacterized protein LOC111455503 OS=Cucurbita moschata OX=3662 GN=LOC1114555...	[more]
A0A6J1I5T0	2.7e-54	96.03	uncharacterized protein LOC111470941 OS=Cucurbita maxima OX=3661 GN=LOC111470941...	[more]
A0A1S3C0U4	2.8e-51	91.94	uncharacterized protein LOC103495201 OS=Cucumis melo OX=3656 GN=LOC103495201 PE=...	[more]
A0A0A0K4W4	1.5e-49	88.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075020 PE=3 SV=1	[more]
A0A6J1C3G5	4.6e-46	86.61	uncharacterized protein LOC111008007 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]

BLAST of CmoCh19G006480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952989.1	1.8e-57	100.00	uncharacterized protein LOC111455503 [Cucurbita moschata]	[more]
KAG6572003.1	4.1e-57	99.21	Cytochrome b6-f complex subunit 7, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023554105.1	2.5e-54	96.03	uncharacterized protein LOC111811473 [Cucurbita pepo subsp. pepo]	[more]
XP_022972366.1	5.5e-54	96.03	uncharacterized protein LOC111470941 [Cucurbita maxima]	[more]
XP_038887487.1	4.4e-51	91.13	uncharacterized protein LOC120077620 [Benincasa hispida]	[more]

BLAST of CmoCh19G006480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G26500.2	7.5e-25	56.69	cytochrome b6f complex subunit (petM), putative	[more]
AT2G26500.1	7.5e-25	56.69	cytochrome b6f complex subunit (petM), putative	[more]
AT2G26500.3	3.7e-08	37.30	cytochrome b6f complex subunit (petM), putative	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012595	PetM of cytochrome b6/f complex subunit 7	PFAM	PF08041	PetM	coord: 92..119 e-value: 4.2E-10 score: 39.0
IPR012595	PetM of cytochrome b6/f complex subunit 7	HAMAP	MF_00396	Cytb6_f_PetM	coord: 90..122 score: 12.774698
None	No IPR available	PANTHER	PTHR34951	B6F COMPLEX SUBUNIT, PUTATIVE, EXPRESSED-RELATED	coord: 3..126
None	No IPR available	PANTHER	PTHR34951:SF1	B6F COMPLEX SUBUNIT, PUTATIVE, EXPRESSED-RELATED	coord: 3..126
None	No IPR available	SUPERFAMILY	103441	PetM subunit of the cytochrome b6f complex	coord: 91..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G006480.1	CmoCh19G006480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009512	cytochrome b6f complex
cellular_component	GO:0016021	integral component of membrane