CmoCh19G005790 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh19G005790
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	SWIB domain-containing protein
Location	Cmo_Chr19: 6568435 .. 6570105 (-)
RNA-Seq Expression	CmoCh19G005790
Synteny	CmoCh19G005790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCTCACCGCTTCATCCTCGCTCTATCCATTTTTCGAACGTGCACACAACCAGTCGTCAGTTCCGGCCATGGCTTTCGTCTCCACCTTCGTCTCCGGCGAACCGTCGCTCCTCGTCGCCAGAGCCTCCGCTGTCGTCTCCTCCGTCAAGCATCCCTATCAACTTCCTCTGCCTAATTTGCGCTTCTCCCGCACCATTACCTTCGCATCCGCCTCCAACCAGACCACTGCCTCCTCCCGGCAGCCCCGTGGCATCATGAAGCCCCGGAGGATTTCGCCGGAGATGCAGGCGCTTGTTGGTGCTCCCGAGATTTCTCGTACCGAAGCCCTTAAGGTCATTTGGACTCACATTAAAGAACATAATCTTCAGGTAGACTCTCTCCTTTCTCTGTTGTTTTTCATTTTTCTTTTTTCTTTCGTCGTTGTTCTTTCATTCATCTGTTGATGTTACTAGTTTTCGGAGAATAATCCTTCAAGTTTATGGTATTTTTTTTCTCGAGTTCTGTTGTTTGATGTATCGCCATGGATGAAAAATATCTTGTGCTGAAATTAATCCAACATCTCCTTCCAGAACAAGACATTGGATCTTGTTCTTTAGAATTTTCTTACAGTTAAATCATTTGTTTCTTCCACTCTTAAATCATTTGTTTTGAAGATGCTTTAGATGTGACCTTTTTTATTAGTGAAGTTCGTAAGTTTAGGAGACAGAGTTGTTGGGTTCTGAGGAGGCTGTAAGATGTATTGGCATGGCTTGAAAATGTCTTGGTCTGAAACGAGGGTTTTGTAGGTTGATGTACACCTAAGTCCACTGCTAGCCGATGTTGTCATACCGGGCGGTGTGCCATCGTAGATGCTGGTCCTCGAAGAGGGTGGATACGATTGAAGATGAGAATGAAACATTTTTTATAAGGCTGTGAAAACTACCTCCTAGCATACCCGACAATATCTGCTAGCAATTAGGGCTTAGGGTTTAGAAATGAGGGGTTGAAAGCATAGAACCTCACAACCTTGAAGTTGAGTCGATTTGTTGTTTTGTTTCGATTATTTCTTCATTCTTATAGAAAGTTAGTGACAAAAAAATCATAATTTGCGACATAGTTAGCTCCTTGGAAATCAAGGGTTCAAAGCACGAAACCCCCCCATAACTCCATAACTCCAATGTCGAGGTGATTCTTTAATCATAATTTGCAAAGTAGGCTCCTTAGAAATCAGGGTTTCAAAGCACGGAACCCCAAAACCCCGAAGTCGAGTTGATTTGTTGTTTTGTTTATGATAATTTCTTCATTCTTATAGAAACCTAGCGACAAGAAAGCCATAATTTGCGACATAGTTGGCTCCTTAGAAAATCATTTAATTTGGGACGTAGTTAGCTCCCTAGAAATCAAGGGTTCAAAGCATAGAACCCCAGAACCCTGAACTCGAGTCGATTCATTGTTTTGTTTCTAATAATTTCTTCATTCTTACAGAAACCCAGCGACAAGAAAATCATAATATGCGACGAGAAGCTGAAGAAAATATTCGGAGGGAAAGACGAAGTCGGGTTTCTGGAGATTGCAGGGCTAATAAGTTCCCACTTTCTATGATGATTTGAAGAATGGAAGATGAACTTTGTTTGTTCGTTTGTTTCGGGAGTCGCTCAGGTATTATTGCTCACTGAATCCTGCAGTTCATAG

mRNA sequence

GCCTCACCGCTTCATCCTCGCTCTATCCATTTTTCGAACGTGCACACAACCAGTCGTCAGTTCCGGCCATGGCTTTCGTCTCCACCTTCGTCTCCGGCGAACCGTCGCTCCTCGTCGCCAGAGCCTCCGCTGTCGTCTCCTCCGTCAAGCATCCCTATCAACTTCCTCTGCCTAATTTGCGCTTCTCCCGCACCATTACCTTCGCATCCGCCTCCAACCAGACCACTGCCTCCTCCCGGCAGCCCCGTGGCATCATGAAGCCCCGGAGGATTTCGCCGGAGATGCAGGCGCTTGTTGGTGCTCCCGAGATTTCTCGTACCGAAGCCCTTAAGGTCATTTGGACTCACATTAAAGAACATAATCTTCAGAAACCCAGCGACAAGAAAATCATAATATGCGACGAGAAGCTGAAGAAAATATTCGGAGGGAAAGACGAAATGAACTTTGTTTGTTCGTTTGTTTCGGGAGTCGCTCAGGTATTATTGCTCACTGAATCCTGCAGTTCATAG

Coding sequence (CDS)

ATGGCTTTCGTCTCCACCTTCGTCTCCGGCGAACCGTCGCTCCTCGTCGCCAGAGCCTCCGCTGTCGTCTCCTCCGTCAAGCATCCCTATCAACTTCCTCTGCCTAATTTGCGCTTCTCCCGCACCATTACCTTCGCATCCGCCTCCAACCAGACCACTGCCTCCTCCCGGCAGCCCCGTGGCATCATGAAGCCCCGGAGGATTTCGCCGGAGATGCAGGCGCTTGTTGGTGCTCCCGAGATTTCTCGTACCGAAGCCCTTAAGGTCATTTGGACTCACATTAAAGAACATAATCTTCAGAAACCCAGCGACAAGAAAATCATAATATGCGACGAGAAGCTGAAGAAAATATTCGGAGGGAAAGACGAAATGAACTTTGTTTGTTCGTTTGTTTCGGGAGTCGCTCAGGTATTATTGCTCACTGAATCCTGCAGTTCATAG

Protein sequence

MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGGKDEMNFVCSFVSGVAQVLLLTESCSS

Homology

[Close]

BLAST of CmoCh19G005790 vs. ExPASy Swiss-Prot
Match: Q05024 (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRI1 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.6e-10
Identity = 27/57 (47.37%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 68  ISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGGKDEM 125
           +S  +Q  +G+ E+ RT+ +K+IW +IKEH+LQ P D++ I+CDEK++ IFG K  M
Sbjct: 126 LSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFGKKMTM 182

[Close]

BLAST of CmoCh19G005790 vs. ExPASy Swiss-Prot
Match: O74503 (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spp27 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.9e-09
Identity = 24/55 (43.64%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 64  KPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIF 119
           KP ++SP++   +G  ++SR + +K +W +IK H+LQ P+DK+ I+CD+KLK +F
Sbjct: 119 KPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVF 173

[Close]

BLAST of CmoCh19G005790 vs. ExPASy Swiss-Prot
Match: Q08747 (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UAF30 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-08
Identity = 26/57 (45.61%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 68  ISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGGKDEM 125
           +S  + +L+G  E++RTE ++ +W +IK HNLQ P++KK I+CDEKL+ I G    M
Sbjct: 126 LSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELILGKSTNM 182

[Close]

BLAST of CmoCh19G005790 vs. ExPASy TrEMBL
Match: A0A6J1GL33 (uncharacterized protein LOC111455244 OS=Cucurbita moschata OX=3662 GN=LOC111455244 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.7e-60
Identity = 124/127 (97.64%), Postives = 126/127 (99.21%), Query Frame = 0


Query: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60
           MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR
Sbjct: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60

Query: 61  GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGG 120
           GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGG
Sbjct: 61  GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGG 120

Query: 121 KDEMNFV 128
           KDE+ F+
Sbjct: 121 KDEVGFL 127

[Close]

BLAST of CmoCh19G005790 vs. ExPASy TrEMBL
Match: A0A6J1IAA1 (uncharacterized protein LOC111471082 OS=Cucurbita maxima OX=3661 GN=LOC111471082 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.9e-57
Identity = 118/127 (92.91%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60
           MAFVSTFVSGE SLL+ARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQ TASSRQPR
Sbjct: 1   MAFVSTFVSGELSLLLARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQATASSRQPR 60

Query: 61  GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGG 120
           GIMKPRRISPEMQALVGAPEISRT+ALKVIW HIKEHNLQKPSDKKII+CDEKLKKIFGG
Sbjct: 61  GIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKIIMCDEKLKKIFGG 120

Query: 121 KDEMNFV 128
           KDE+ F+
Sbjct: 121 KDEVGFL 127

[Close]

BLAST of CmoCh19G005790 vs. ExPASy TrEMBL
Match: A0A6J1JNZ3 (uncharacterized protein LOC111486197 OS=Cucurbita maxima OX=3661 GN=LOC111486197 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 6.0e-50
Identity = 103/127 (81.10%), Postives = 111/127 (87.40%), Query Frame = 0


Query: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60
           MAFVSTF+SGE SLL  RASA  SSVKHPYQ P  NL F+RT+TFAS SNQ TAS RQPR
Sbjct: 1   MAFVSTFISGELSLLTVRASATSSSVKHPYQFPPSNLHFARTVTFASTSNQATASQRQPR 60

Query: 61  GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGG 120
           GIMKP+RISPEMQALVG PEISRT+ALKVIW HIKEHNLQKPSDKK+IICDEKLK IFGG
Sbjct: 61  GIMKPKRISPEMQALVGVPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGG 120

Query: 121 KDEMNFV 128
           KDE+ F+
Sbjct: 121 KDEVGFL 127

[Close]

BLAST of CmoCh19G005790 vs. ExPASy TrEMBL
Match: A0A6J1EIX1 (uncharacterized protein LOC111434699 OS=Cucurbita moschata OX=3662 GN=LOC111434699 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 6.0e-50
Identity = 103/127 (81.10%), Postives = 111/127 (87.40%), Query Frame = 0


Query: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60
           MAFVSTF+SGE SLL  RASA  SSVKHPYQ P  NL F+RT+TFAS SNQ TAS RQPR
Sbjct: 1   MAFVSTFISGELSLLTVRASATPSSVKHPYQFPPSNLHFARTVTFASTSNQATASQRQPR 60

Query: 61  GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGG 120
           GIMKP+RISPEMQALVG PEISRT+ALKVIW HIKEHNLQKPSDKK+IICDEKLK IFGG
Sbjct: 61  GIMKPKRISPEMQALVGVPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGG 120

Query: 121 KDEMNFV 128
           KDE+ F+
Sbjct: 121 KDEVGFL 127

[Close]

BLAST of CmoCh19G005790 vs. ExPASy TrEMBL
Match: A0A6J1D4Q4 (uncharacterized protein LOC111017291 OS=Momordica charantia OX=3673 GN=LOC111017291 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 5.2e-46
Identity = 100/127 (78.74%), Postives = 112/127 (88.19%), Query Frame = 0


Query: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60
           MAFVSTF SGEP+LLVARASA  SS+KH  QLP  NLRF R +TFA+AS+Q TAS R+PR
Sbjct: 36  MAFVSTFFSGEPALLVARASA--SSLKHAPQLPPANLRFVRPVTFATASDQATASRRKPR 95

Query: 61  GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGG 120
           GIMKPR ISPEMQALVG PEISRT+ALKVIWTHIKEHNLQ+P +KKII+CDEKLKKIFGG
Sbjct: 96  GIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRPDNKKIIVCDEKLKKIFGG 155

Query: 121 KDEMNFV 128
           KDE+ F+
Sbjct: 156 KDEVGFL 160

[Close]

BLAST of CmoCh19G005790 vs. NCBI nr
Match: XP_022952608.1 (uncharacterized protein LOC111455244 [Cucurbita moschata])

HSP 1 Score: 241.9 bits (616), Expect = 3.5e-60
Identity = 124/127 (97.64%), Postives = 126/127 (99.21%), Query Frame = 0


Query: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60
           MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR
Sbjct: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60

Query: 61  GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGG 120
           GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGG
Sbjct: 61  GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGG 120

Query: 121 KDEMNFV 128
           KDE+ F+
Sbjct: 121 KDEVGFL 127

[Close]

BLAST of CmoCh19G005790 vs. NCBI nr
Match: KAG6571933.1 (hypothetical protein SDJN03_28661, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011621.1 TRI1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 240.7 bits (613), Expect = 7.7e-60
Identity = 123/127 (96.85%), Postives = 126/127 (99.21%), Query Frame = 0


Query: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60
           MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR
Sbjct: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60

Query: 61  GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGG 120
           GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKII+CDEKLKKIFGG
Sbjct: 61  GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIMCDEKLKKIFGG 120

Query: 121 KDEMNFV 128
           KDE+ F+
Sbjct: 121 KDEVGFL 127

[Close]

BLAST of CmoCh19G005790 vs. NCBI nr
Match: XP_023553864.1 (uncharacterized protein LOC111811315 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 239.6 bits (610), Expect = 1.7e-59
Identity = 122/127 (96.06%), Postives = 126/127 (99.21%), Query Frame = 0


Query: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60
           MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR
Sbjct: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60

Query: 61  GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGG 120
           GIMKPRRISPEMQALVGAPEISRT+ALKVIWTHIKEHNLQKP+DKKIIICDEKLKKIFGG
Sbjct: 61  GIMKPRRISPEMQALVGAPEISRTQALKVIWTHIKEHNLQKPNDKKIIICDEKLKKIFGG 120

Query: 121 KDEMNFV 128
           KDE+ F+
Sbjct: 121 KDEVGFL 127

[Close]

BLAST of CmoCh19G005790 vs. NCBI nr
Match: XP_022972543.1 (uncharacterized protein LOC111471082 [Cucurbita maxima])

HSP 1 Score: 230.7 bits (587), Expect = 8.0e-57
Identity = 118/127 (92.91%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60
           MAFVSTFVSGE SLL+ARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQ TASSRQPR
Sbjct: 1   MAFVSTFVSGELSLLLARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQATASSRQPR 60

Query: 61  GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGG 120
           GIMKPRRISPEMQALVGAPEISRT+ALKVIW HIKEHNLQKPSDKKII+CDEKLKKIFGG
Sbjct: 61  GIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKIIMCDEKLKKIFGG 120

Query: 121 KDEMNFV 128
           KDE+ F+
Sbjct: 121 KDEVGFL 127

[Close]

BLAST of CmoCh19G005790 vs. NCBI nr
Match: XP_038888173.1 (uncharacterized protein LOC120078055 isoform X1 [Benincasa hispida])

HSP 1 Score: 219.5 bits (558), Expect = 1.8e-53
Identity = 108/127 (85.04%), Postives = 118/127 (92.91%), Query Frame = 0


Query: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60
           MAF+STF+SGEPSLLV +ASA  +SVK PYQLPLPNLRF+RT+TFASASNQ TAS RQPR
Sbjct: 1   MAFLSTFISGEPSLLVVKASATATSVKQPYQLPLPNLRFARTVTFASASNQATASHRQPR 60

Query: 61  GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGG 120
           GIMKPRRISPEMQALVGAPEISRT+ALKVIW HIKEHNLQKPSDKK+IICDEKLK IFGG
Sbjct: 61  GIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGG 120

Query: 121 KDEMNFV 128
           KDE+ F+
Sbjct: 121 KDEVGFL 127

[Close]

BLAST of CmoCh19G005790 vs. TAIR 10
Match: AT2G14880.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 110.5 bits (275), Expect = 1.1e-24
Identity = 55/96 (57.29%), Postives = 73/96 (76.04%), Query Frame = 0


Query: 33  PLPNLRFSRTITFASASNQTTASS-RQPRGIMKPRRISPEMQALVGAPEISRTEALKVIW 92
           P   LR  R +T A+ S++ TA++ R PRGIMKPR +SPEMQ +V  PEI+RT+ALK IW
Sbjct: 35  PAAKLRLVRAVTSATESSEPTATNKRVPRGIMKPRPVSPEMQDIVELPEIARTQALKRIW 94

Query: 93  THIKEHNLQKPSDKKIIICDEKLKKIFGGKDEMNFV 128
            +IKEH+LQ P +K+ I+CDEKLKKIF G+D + F+
Sbjct: 95  AYIKEHDLQDPQNKREILCDEKLKKIFEGRDRVGFL 130

[Close]

BLAST of CmoCh19G005790 vs. TAIR 10
Match: AT4G34290.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 109.0 bits (271), Expect = 3.3e-24
Identity = 58/111 (52.25%), Postives = 77/111 (69.37%), Query Frame = 0


Query: 20  SAVVSSVKHPYQLPLPNLRFSRTITFASASNQ---TTASSRQPRGIMKPRRISPEMQALV 79
           S++  S  HP      NLR  R +T A+A++    TT  +R+PRGIMKPR +S  MQ +V
Sbjct: 28  SSLRLSPNHP-----TNLRMVRAVTSAAAASSDPTTTTKTREPRGIMKPRPVSQAMQDVV 87

Query: 80  GAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGGKDEMNFV 128
           G PEI RT+ALK IW +IKEH+LQ P +K+ I+CDEKLKKIF GK+ + F+
Sbjct: 88  GVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERVGFL 133

[Close]

BLAST of CmoCh19G005790 vs. TAIR 10
Match: AT3G03590.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 74.7 bits (182), Expect = 6.8e-14
Identity = 47/129 (36.43%), Postives = 68/129 (52.71%), Query Frame = 0


Query: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60
           M+ V+  V      L+A AS   SS+        P  +          +   + + + PR
Sbjct: 1   MSSVAAMVFRGARSLLAPASRATSSLVSAGSTKKPAAKPKAKAKPKPKAKSDSPAKKTPR 60

Query: 61  --GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIF 120
             GI K   +SP +   +G  E SRT+A+K IWT+IK H+LQ P+DK+ I CDE LK IF
Sbjct: 61  STGIFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIF 120

Query: 121 GGKDEMNFV 128
            GKD++ F+
Sbjct: 121 EGKDKVGFL 129

[Close]

BLAST of CmoCh19G005790 vs. TAIR 10
Match: AT1G49520.1 (SWIB complex BAF60b domain-containing protein )

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-13
Identity = 31/58 (53.45%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 61  GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIF 119
           G  K   +SPE+QA  G P+++RTE +K++W +IKE+NLQ PSDK+ IICDE L+ +F
Sbjct: 250 GFTKVCSLSPELQAFTGTPQLARTEVVKMLWKYIKENNLQDPSDKRTIICDESLRSLF 307

[Close]

BLAST of CmoCh19G005790 vs. TAIR 10
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 73.2 bits (178), Expect = 2.0e-13
Identity = 37/87 (42.53%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 41  RTITFASASNQTTASSRQPRGIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQ 100
           R +   +AS+    + RQ  GI+K   +S  +   +G  E+SRT A+K IW +IK +NLQ
Sbjct: 9   RVLMAKAASSTGAKTGRQGTGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQ 68

Query: 101 KPSDKKIIICDEKLKKIFGGKDEMNFV 128
            P +K+ I+CDE+LK IF GKD + F+
Sbjct: 69  NPVNKREILCDEQLKTIFSGKDTVGFL 95

The following BLAST results are available for this feature:

BLAST of CmoCh19G005790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q05024	7.6e-10	47.37	Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 ...	[more]
O74503	2.9e-09	43.64	Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97...	[more]
Q08747	1.4e-08	45.61	Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC...	[more]

BLAST of CmoCh19G005790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GL33	1.7e-60	97.64	uncharacterized protein LOC111455244 OS=Cucurbita moschata OX=3662 GN=LOC1114552...	[more]
A0A6J1IAA1	3.9e-57	92.91	uncharacterized protein LOC111471082 OS=Cucurbita maxima OX=3661 GN=LOC111471082...	[more]
A0A6J1JNZ3	6.0e-50	81.10	uncharacterized protein LOC111486197 OS=Cucurbita maxima OX=3661 GN=LOC111486197...	[more]
A0A6J1EIX1	6.0e-50	81.10	uncharacterized protein LOC111434699 OS=Cucurbita moschata OX=3662 GN=LOC1114346...	[more]
A0A6J1D4Q4	5.2e-46	78.74	uncharacterized protein LOC111017291 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]

BLAST of CmoCh19G005790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952608.1	3.5e-60	97.64	uncharacterized protein LOC111455244 [Cucurbita moschata]	[more]
KAG6571933.1	7.7e-60	96.85	hypothetical protein SDJN03_28661, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023553864.1	1.7e-59	96.06	uncharacterized protein LOC111811315 [Cucurbita pepo subsp. pepo]	[more]
XP_022972543.1	8.0e-57	92.91	uncharacterized protein LOC111471082 [Cucurbita maxima]	[more]
XP_038888173.1	1.8e-53	85.04	uncharacterized protein LOC120078055 isoform X1 [Benincasa hispida]	[more]

BLAST of CmoCh19G005790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G14880.1	1.1e-24	57.29	SWIB/MDM2 domain superfamily protein	[more]
AT4G34290.1	3.3e-24	52.25	SWIB/MDM2 domain superfamily protein	[more]
AT3G03590.1	6.8e-14	36.43	SWIB/MDM2 domain superfamily protein	[more]
AT1G49520.1	1.5e-13	53.45	SWIB complex BAF60b domain-containing protein	[more]
AT2G35605.1	2.0e-13	42.53	SWIB/MDM2 domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 62..143 e-value: 2.2E-24 score: 97.0
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 64..126 e-value: 3.8E-24 score: 84.4
IPR003121	SWIB/MDM2 domain	PROSITE	PS51925	SWIB_MDM2	coord: 61..141 score: 17.754047
IPR036885	SWIB/MDM2 domain superfamily	GENE3D	1.10.245.10	SWIB/MDM2 domain	coord: 55..136 e-value: 2.2E-22 score: 80.7
IPR036885	SWIB/MDM2 domain superfamily	SUPERFAMILY	47592	SWIB/MDM2 domain	coord: 55..126
None	No IPR available	PANTHER	PTHR13844	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D	coord: 7..127
None	No IPR available	PANTHER	PTHR13844:SF8	EXPRESSED PROTEIN-RELATED	coord: 7..127
None	No IPR available	CDD	cd10567	SWIB-MDM2_like	coord: 66..126 e-value: 6.36174E-32 score: 106.474

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G005790.1	CmoCh19G005790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus