CmoCh19G002530 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh19G002530
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr19: 1840588 .. 1841109 (-)
RNA-Seq Expression	CmoCh19G002530
Synteny	CmoCh19G002530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATCGTGCAAAATAAGCACGTTGCTGAAGCAGAGAGTAGTTTTCCGATGAAGCTCGCAGATCAAGAAAAATACATCAGAATAGACAACGATATCATGACTCGTCGACTGAAGAATCGAGAAAGGCAACGCAGATATAGAGCTCGGAAACGTTTAGAAGAAGAAATAAAGAAGGCTTCAACCATAAAACACCCTACTCAAACAGGAACATATTTTCAACCAAATGGTGTTGCGAACAATCCCTTGACTCGAGTTCATTGTAGTCGAAATTGGAAGAAGGAAGCAAGAAATGCCAGTGTATCAAGAGGGTTAGAAGAAGCCTCTTGTAATAGTTCTAATATGGCTGCAAAATCATCAACCAGTGAGGGTCAAATCCAGTGCCAGCCCTCTCATCCCGAACCACAATCAGAAACACGATCACACTCAGAGCCACCTACCGAACAGCTCGTCTCAGAGACAGCGAAAAAGGTGCTCGGTCGAAGAAATTGGAAAGCAGATGCGAGAAAGAAGAAGAATTAA

mRNA sequence

ATGGAAATCGTGCAAAATAAGCACGTTGCTGAAGCAGAGAGTAGTTTTCCGATGAAGCTCGCAGATCAAGAAAAATACATCAGAATAGACAACGATATCATGACTCGTCGACTGAAGAATCGAGAAAGGCAACGCAGATATAGAGCTCGGAAACGTTTAGAAGAAGAAATAAAGAAGGCTTCAACCATAAAACACCCTACTCAAACAGGAACATATTTTCAACCAAATGGTGTTGCGAACAATCCCTTGACTCGAGTTCATTGTAGTCGAAATTGGAAGAAGGAAGCAAGAAATGCCAGTGTATCAAGAGGGTTAGAAGAAGCCTCTTGTAATAGTTCTAATATGGCTGCAAAATCATCAACCAGTGAGGGTCAAATCCAGTGCCAGCCCTCTCATCCCGAACCACAATCAGAAACACGATCACACTCAGAGCCACCTACCGAACAGCTCGTCTCAGAGACAGCGAAAAAGGTGCTCGGTCGAAGAAATTGGAAAGCAGATGCGAGAAAGAAGAAGAATTAA

Coding sequence (CDS)

ATGGAAATCGTGCAAAATAAGCACGTTGCTGAAGCAGAGAGTAGTTTTCCGATGAAGCTCGCAGATCAAGAAAAATACATCAGAATAGACAACGATATCATGACTCGTCGACTGAAGAATCGAGAAAGGCAACGCAGATATAGAGCTCGGAAACGTTTAGAAGAAGAAATAAAGAAGGCTTCAACCATAAAACACCCTACTCAAACAGGAACATATTTTCAACCAAATGGTGTTGCGAACAATCCCTTGACTCGAGTTCATTGTAGTCGAAATTGGAAGAAGGAAGCAAGAAATGCCAGTGTATCAAGAGGGTTAGAAGAAGCCTCTTGTAATAGTTCTAATATGGCTGCAAAATCATCAACCAGTGAGGGTCAAATCCAGTGCCAGCCCTCTCATCCCGAACCACAATCAGAAACACGATCACACTCAGAGCCACCTACCGAACAGCTCGTCTCAGAGACAGCGAAAAAGGTGCTCGGTCGAAGAAATTGGAAAGCAGATGCGAGAAAGAAGAAGAATTAA

Protein sequence

MEIVQNKHVAEAESSFPMKLADQEKYIRIDNDIMTRRLKNRERQRRYRARKRLEEEIKKASTIKHPTQTGTYFQPNGVANNPLTRVHCSRNWKKEARNASVSRGLEEASCNSSNMAAKSSTSEGQIQCQPSHPEPQSETRSHSEPPTEQLVSETAKKVLGRRNWKADARKKKN

Homology

[Close]

BLAST of CmoCh19G002530 vs. ExPASy TrEMBL
Match: A0A6J1HFL3 (uncharacterized protein LOC111463869 OS=Cucurbita moschata OX=3662 GN=LOC111463869 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 9.5e-87
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MEIVQNKHVAEAESSFPMKLADQEKYIRIDNDIMTRRLKNRERQRRYRARKRLEEEIKKA 60
           MEIVQNKHVAEAESSFPMKLADQEKYIRIDNDIMTRRLKNRERQRRYRARKRLEEEIKKA
Sbjct: 1   MEIVQNKHVAEAESSFPMKLADQEKYIRIDNDIMTRRLKNRERQRRYRARKRLEEEIKKA 60

Query: 61  STIKHPTQTGTYFQPNGVANNPLTRVHCSRNWKKEARNASVSRGLEEASCNSSNMAAKSS 120
           STIKHPTQTGTYFQPNGVANNPLTRVHCSRNWKKEARNASVSRGLEEASCNSSNMAAKSS
Sbjct: 61  STIKHPTQTGTYFQPNGVANNPLTRVHCSRNWKKEARNASVSRGLEEASCNSSNMAAKSS 120

Query: 121 TSEGQIQCQPSHPEPQSETRSHSEPPTEQLVSETAKKVLGRRNWKADARKKKN 174
           TSEGQIQCQPSHPEPQSETRSHSEPPTEQLVSETAKKVLGRRNWKADARKKKN
Sbjct: 121 TSEGQIQCQPSHPEPQSETRSHSEPPTEQLVSETAKKVLGRRNWKADARKKKN 173

[Close]

BLAST of CmoCh19G002530 vs. ExPASy TrEMBL
Match: A0A6J1HUC8 (uncharacterized protein LOC111466937 OS=Cucurbita maxima OX=3661 GN=LOC111466937 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 1.8e-85
Identity = 171/173 (98.84%), Postives = 172/173 (99.42%), Query Frame = 0


Query: 1   MEIVQNKHVAEAESSFPMKLADQEKYIRIDNDIMTRRLKNRERQRRYRARKRLEEEIKKA 60
           MEIVQNKHVAEAESSFPMKL DQEKYIRIDNDIMTRRLKNRERQRRYRARKRLEEEIKKA
Sbjct: 1   MEIVQNKHVAEAESSFPMKLTDQEKYIRIDNDIMTRRLKNRERQRRYRARKRLEEEIKKA 60

Query: 61  STIKHPTQTGTYFQPNGVANNPLTRVHCSRNWKKEARNASVSRGLEEASCNSSNMAAKSS 120
           STIKHPTQTGTYFQPNGVANNPLTRVHCSRNWKKEARNASVSRGLEEASCNSSNMAAKSS
Sbjct: 61  STIKHPTQTGTYFQPNGVANNPLTRVHCSRNWKKEARNASVSRGLEEASCNSSNMAAKSS 120

Query: 121 TSEGQIQCQPSHPEPQSETRSHSEPPTEQLVSETAKKVLGRRNWKADARKKKN 174
           TSEGQIQCQPS+PEPQSETRSHSEPPTEQLVSETAKKVLGRRNWKADARKKKN
Sbjct: 121 TSEGQIQCQPSNPEPQSETRSHSEPPTEQLVSETAKKVLGRRNWKADARKKKN 173

[Close]

BLAST of CmoCh19G002530 vs. ExPASy TrEMBL
Match: A0A6J1DPD8 (uncharacterized protein LOC111022965 OS=Momordica charantia OX=3673 GN=LOC111022965 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.2e-68
Identity = 142/173 (82.08%), Postives = 155/173 (89.60%), Query Frame = 0


Query: 1   MEIVQNKHVAEAESSFPMKLADQEKYIRIDNDIMTRRLKNRERQRRYRARKRLEEEIKKA 60
           ME VQNK V E + SFPMKL DQ K  RIDNDIMTRRLKNRERQRRYRARKRLEEEIKKA
Sbjct: 9   MENVQNKQVCETDGSFPMKLVDQGKDYRIDNDIMTRRLKNRERQRRYRARKRLEEEIKKA 68

Query: 61  STIKHPTQTGTYFQPNGVANNPLTRVHCSRNWKKEARNASVSRGLEEASCNSSNMAAKSS 120
           ST+K PTQTGTYFQPNG+ANNPLTRVHC+RNWKK+AR+  VSRGL EASCNSSNMAA++S
Sbjct: 69  STVKQPTQTGTYFQPNGIANNPLTRVHCTRNWKKDARSVHVSRGL-EASCNSSNMAARTS 128

Query: 121 TSEGQIQCQPSHPEPQSETRSHSEPPTEQLVSETAKKVLGRRNWKADARKKKN 174
           TSE Q+QC PS+PEPQ ET+SH EPP EQL+S+TAKKVLGRRNWKADARKKKN
Sbjct: 129 TSESQMQCLPSNPEPQLETQSHLEPPAEQLISQTAKKVLGRRNWKADARKKKN 180

[Close]

BLAST of CmoCh19G002530 vs. ExPASy TrEMBL
Match: A0A0A0LK46 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902290 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.8e-61
Identity = 134/173 (77.46%), Postives = 146/173 (84.39%), Query Frame = 0


Query: 1   MEIVQNKHVAEAESSFPMKLADQEKYIRIDNDIMTRRLKNRERQRRYRARKRLEEEIKKA 60
           ME VQN+HV            DQ+K  RIDNDIMTRRLKNRERQRRYRARKRLEEEIKKA
Sbjct: 1   MEHVQNQHV-----------MDQDKDNRIDNDIMTRRLKNRERQRRYRARKRLEEEIKKA 60

Query: 61  STIKHPTQTGTYFQPNGVANNPLTRVHCSRNWKKEARNASVSRGLEEASCNSSNMAAKSS 120
           ST K P QTGTYFQPNG+ANNPLTRVHCSRNWKKEAR+A++SRG+EE SCNSSNMAAK+S
Sbjct: 61  STAKQPIQTGTYFQPNGIANNPLTRVHCSRNWKKEARSANISRGVEEGSCNSSNMAAKTS 120

Query: 121 TSEGQIQCQPSHPEPQSETRSHSEPPTEQLVSETAKKVLGRRNWKADARKKKN 174
           TSE Q+QC PS+ +PQ ET SHS+ P EQLVSETAKKV GRRNWKADARKKKN
Sbjct: 121 TSESQLQCVPSNVDPQLETPSHSKTPAEQLVSETAKKVFGRRNWKADARKKKN 162

[Close]

BLAST of CmoCh19G002530 vs. ExPASy TrEMBL
Match: A0A1S3CQ53 (uncharacterized protein LOC103503545 OS=Cucumis melo OX=3656 GN=LOC103503545 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.5e-60
Identity = 132/173 (76.30%), Postives = 146/173 (84.39%), Query Frame = 0


Query: 1   MEIVQNKHVAEAESSFPMKLADQEKYIRIDNDIMTRRLKNRERQRRYRARKRLEEEIKKA 60
           ME VQN+HV            DQ+K  RIDNDIMTRRLKNRERQRRYRARKRLEEEIKKA
Sbjct: 1   MEHVQNQHV-----------MDQDKGNRIDNDIMTRRLKNRERQRRYRARKRLEEEIKKA 60

Query: 61  STIKHPTQTGTYFQPNGVANNPLTRVHCSRNWKKEARNASVSRGLEEASCNSSNMAAKSS 120
           S  K P QTGTYFQPNG+ANNPLTRVHCSRNWKKEAR+A++SRG+EEASCNSSNMAA++S
Sbjct: 61  SIAKQPIQTGTYFQPNGIANNPLTRVHCSRNWKKEARSANISRGVEEASCNSSNMAARTS 120

Query: 121 TSEGQIQCQPSHPEPQSETRSHSEPPTEQLVSETAKKVLGRRNWKADARKKKN 174
           TSE Q+QC PS+ +PQ ET SHS+ P +QLVSETAKKV GRRNWKADARKKKN
Sbjct: 121 TSESQLQCVPSNVDPQLETPSHSKTPADQLVSETAKKVFGRRNWKADARKKKN 162

[Close]

BLAST of CmoCh19G002530 vs. TAIR 10
Match: AT1G32630.1 (unknown protein; Has 18 Blast hits to 18 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 12; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 57.8 bits (138), Expect = 1.0e-08
Identity = 56/167 (33.53%), Postives = 75/167 (44.91%), Query Frame = 0


Query: 20  LADQEKYIRIDND-IMTRRLKNRERQRRYRARKRLEEE------------IKKASTIKHP 79
           L+  EK   ID D +M RR+KNRERQRRYRARKR+ EE            + K    +  
Sbjct: 6   LSIDEKEGLIDKDEVMIRRMKNRERQRRYRARKRMREEEAGNDDNLSFETMGKQEEEEEE 65

Query: 80  TQTGTYFQPNGVANNPLTRVHCSRNWKKEARNAS-VSRGLEEASCNSSNMAAKSSTSEGQ 139
            +   +  P+G   N + RV+C RNWKKEAR A  +    +++SC S             
Sbjct: 66  DEGLEFNGPSGYVENFVRRVYCDRNWKKEARRAHLIMNKAQDSSCES------------- 125

Query: 140 IQCQPSHPEPQSETRSHSEPPTEQLVSETAKKVLGRRNWKADARKKK 173
                     + + R H                  RR+WKA+ARKKK
Sbjct: 126 ---------VKRKIRPH------------------RRDWKAEARKKK 132

The following BLAST results are available for this feature:

BLAST of CmoCh19G002530 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh19G002530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HFL3	9.5e-87	100.00	uncharacterized protein LOC111463869 OS=Cucurbita moschata OX=3662 GN=LOC1114638...	[more]
A0A6J1HUC8	1.8e-85	98.84	uncharacterized protein LOC111466937 OS=Cucurbita maxima OX=3661 GN=LOC111466937...	[more]
A0A6J1DPD8	1.2e-68	82.08	uncharacterized protein LOC111022965 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A0A0LK46	1.8e-61	77.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902290 PE=4 SV=1	[more]
A0A1S3CQ53	1.5e-60	76.30	uncharacterized protein LOC103503545 OS=Cucumis melo OX=3656 GN=LOC103503545 PE=...	[more]

BLAST of CmoCh19G002530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32630.1	1.0e-08	33.53	unknown protein; Has 18 Blast hits to 18 proteins in 10 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..173
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G002530.1	CmoCh19G002530.1	mRNA