CmoCh19G002520 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh19G002520
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr19: 1838273 .. 1838596 (+)
RNA-Seq Expression	CmoCh19G002520
Synteny	CmoCh19G002520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTGCCTATCATGCCAAGCCCTTCCAAGGACCCAATCTGATAGGGAGGATGAAGCTCAAGAGACCTCTTCTAGCGTACGCCAATCGTGTTGCCTACACATATCACGGCGGTGGTCGACCGAGCTGACACCTCGGTCCTATGAGTCGATCAAATCCAACAACAATATTGCCTCATCTTTGCACCAGAAGGCCAAGAATCGTCGTATTCAGAGCGATTGTGGCTGGAAAGAACCGAGGTTGATTCGGTGCTCTGGGATGAGAAGGAATTGGAGCTTTGAGGAGTTGGGGTTGAGAGATCAAAAGAAAGGGAGGTTCCATTGA

mRNA sequence

ATGAATTGCCTATCATGCCAAGCCCTTCCAAGGACCCAATCTGATAGGGAGGATGAAGCTCAAGAGACCTCTTCTAGCGTACGCCAATCGTGTTGCCTACACATATCACGGCGGTGGTCGACCGAGCTGACACCTCGGTCCTATGAGTCGATCAAATCCAACAACAATATTGCCTCATCTTTGCACCAGAAGGCCAAGAATCGTCGTATTCAGAGCGATTGTGGCTGGAAAGAACCGAGGTTGATTCGGTGCTCTGGGATGAGAAGGAATTGGAGCTTTGAGGAGTTGGGGTTGAGAGATCAAAAGAAAGGGAGGTTCCATTGA

Coding sequence (CDS)

ATGAATTGCCTATCATGCCAAGCCCTTCCAAGGACCCAATCTGATAGGGAGGATGAAGCTCAAGAGACCTCTTCTAGCGTACGCCAATCGTGTTGCCTACACATATCACGGCGGTGGTCGACCGAGCTGACACCTCGGTCCTATGAGTCGATCAAATCCAACAACAATATTGCCTCATCTTTGCACCAGAAGGCCAAGAATCGTCGTATTCAGAGCGATTGTGGCTGGAAAGAACCGAGGTTGATTCGGTGCTCTGGGATGAGAAGGAATTGGAGCTTTGAGGAGTTGGGGTTGAGAGATCAAAAGAAAGGGAGGTTCCATTGA

Protein sequence

MNCLSCQALPRTQSDREDEAQETSSSVRQSCCLHISRRWSTELTPRSYESIKSNNNIASSLHQKAKNRRIQSDCGWKEPRLIRCSGMRRNWSFEELGLRDQKKGRFH

Homology

[Close]

BLAST of CmoCh19G002520 vs. ExPASy TrEMBL
Match: A0A0A0LEC0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902280 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.5e-31
Identity = 70/111 (63.06%), Postives = 92/111 (82.88%), Query Frame = 0


Query: 1   MNCLSCQALPRTQSDREDEAQETSSSVRQSCCLHISRRWSTEL-TPRSYESIKSNNN--- 60
           MNCL+CQALPRTQSDRE+   ET S+  +SCCL++ RRWSTEL TP SY+SIK +++   
Sbjct: 3   MNCLTCQALPRTQSDRENRGYETPSTRGKSCCLYVPRRWSTELTTPSSYDSIKIDDDHHI 62

Query: 61  IASSLHQKAKNRRIQSDCGWKEPRLIRCSGMRRNWSFEELGLRDQKKGRFH 108
            +S++H+KA+ RR++S+CG  EP+L+R SGMRR+WSFE+LGLR QKKGRFH
Sbjct: 63  SSSNVHKKARTRRVRSECGGNEPKLVRSSGMRRDWSFEDLGLRGQKKGRFH 113

[Close]

BLAST of CmoCh19G002520 vs. ExPASy TrEMBL
Match: A0A5A7T546 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold92G001040 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 5.8e-26
Identity = 71/111 (63.96%), Postives = 87/111 (78.38%), Query Frame = 0


Query: 1   MNCLSCQALPRTQSDRE-DEAQETSSSVRQSCCLHISRRWSTELTPRSYESIKSNNNIAS 60
           MNCL+CQALPRTQSDRE +   ET SS  +SCCL++ RRWS ELTP  +  IK + +I+S
Sbjct: 3   MNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTP--HNPIKLDEDISS 62

Query: 61  S-LHQKAKNRRIQS-DCGWKEPRLIRCSGMRRNWSFEELGLRD-QKKGRFH 108
           S LH+K ++RR +S D G  EPRL+R SGMRR+WSFE+LGLRD QKKGRFH
Sbjct: 63  SDLHKKPRSRRARSGDYGGNEPRLVRSSGMRRDWSFEDLGLRDHQKKGRFH 111

[Close]

BLAST of CmoCh19G002520 vs. ExPASy TrEMBL
Match: A0A5D3E5T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004480 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 5.8e-26
Identity = 71/111 (63.96%), Postives = 87/111 (78.38%), Query Frame = 0


Query: 1   MNCLSCQALPRTQSDRE-DEAQETSSSVRQSCCLHISRRWSTELTPRSYESIKSNNNIAS 60
           MNCL+CQALPRTQSDRE +   ET SS  +SCCL++ RRWS ELTP  +  IK + +I+S
Sbjct: 1   MNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTP--HNPIKLDEDISS 60

Query: 61  S-LHQKAKNRRIQS-DCGWKEPRLIRCSGMRRNWSFEELGLRD-QKKGRFH 108
           S LH+K ++RR +S D G  EPRL+R SGMRR+WSFE+LGLRD QKKGRFH
Sbjct: 61  SDLHKKPRSRRARSGDYGGNEPRLVRSSGMRRDWSFEDLGLRDHQKKGRFH 109

[Close]

BLAST of CmoCh19G002520 vs. ExPASy TrEMBL
Match: A0A1S3CRL3 (uncharacterized protein LOC103503546 OS=Cucumis melo OX=3656 GN=LOC103503546 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 5.8e-26
Identity = 71/111 (63.96%), Postives = 87/111 (78.38%), Query Frame = 0


Query: 1   MNCLSCQALPRTQSDRE-DEAQETSSSVRQSCCLHISRRWSTELTPRSYESIKSNNNIAS 60
           MNCL+CQALPRTQSDRE +   ET SS  +SCCL++ RRWS ELTP  +  IK + +I+S
Sbjct: 1   MNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTP--HNPIKLDEDISS 60

Query: 61  S-LHQKAKNRRIQS-DCGWKEPRLIRCSGMRRNWSFEELGLRD-QKKGRFH 108
           S LH+K ++RR +S D G  EPRL+R SGMRR+WSFE+LGLRD QKKGRFH
Sbjct: 61  SDLHKKPRSRRARSGDYGGNEPRLVRSSGMRRDWSFEDLGLRDHQKKGRFH 109

[Close]

BLAST of CmoCh19G002520 vs. ExPASy TrEMBL
Match: A0A6J1DZN2 (uncharacterized protein LOC111026067 OS=Momordica charantia OX=3673 GN=LOC111026067 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 7.8e-23
Identity = 70/125 (56.00%), Postives = 84/125 (67.20%), Query Frame = 0


Query: 1   MNCLSCQALPRTQSDREDE-----AQETSSS--VRQSCCLHISRRWSTELTPRSYESIKS 60
           MNCL+CQALPRTQSDRE+      A ETSSS    +SCCLH++RRWS ELTP SY  IK+
Sbjct: 3   MNCLTCQALPRTQSDRENNNNNYYAYETSSSRGRGKSCCLHVTRRWSAELTPTSYGHIKT 62

Query: 61  NNNIA--------SSLHQKAKNRRIQSDC---GWKEPRLIRCSGMRRNWSFEELGLRDQK 108
             + A        S   +K K+R ++S        EPRL+R SGMRR+WSFE+L LRDQK
Sbjct: 63  TADNAREGCSSRKSFSDKKVKDRYLRSGSMNEKENEPRLVRSSGMRRDWSFEDLRLRDQK 122

[Close]

BLAST of CmoCh19G002520 vs. TAIR 10
Match: AT5G46770.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 8.8e-11
Identity = 43/127 (33.86%), Postives = 73/127 (57.48%), Query Frame = 0


Query: 1   MNCLSCQALPRTQSDREDEAQ-------ETSSSVRQSCCLHI--SRRWSTELTPRSYESI 60
           +NCLSCQALPRT S+++ +         E ++ + ++CC++    R WS  L+PR YE I
Sbjct: 3   LNCLSCQALPRTDSNKDVDLSGPGPPRVEINNVLGKTCCVNPIGGRNWSGNLSPRIYEKI 62

Query: 61  -KSNNNIASSLH--QKAKNRRIQSDCGW---------KEPRLIRCSGMRRNWSFEEL--- 104
            +  +++A  +   +K  + R+    G          ++P+L+R +G+RRNWSFE L   
Sbjct: 63  GRPGSSLAHKMKKVKKIHHVRLSGPVGSSPSNVPTRPEQPKLVRSTGVRRNWSFENLRDQ 122

[Close]

BLAST of CmoCh19G002520 vs. TAIR 10
Match: AT2G35215.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46770.1); Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 2.7e-04
Identity = 31/96 (32.29%), Postives = 48/96 (50.00%), Query Frame = 0


Query: 1  MNCLSCQALPRTQSDREDEAQETSSSVRQSCCLHISRRWSTELTPRSYESIKSNNNIASS 60
          +NCL+C  L RT SDR D      SS +++         + E   R+  S+     +   
Sbjct: 3  LNCLACHILQRTDSDR-DMGSRKDSSFKENFATS-----AFEKMVRNRSSLPVVRRVNKG 62

Query: 61 LHQKAKNRRIQSDCGWKEPRLIRCSGMRRNWSFEEL 97
           H++  +  I       EP+L+R SG+RR+WSFE+L
Sbjct: 63 -HRRLYSADIMVYGELDEPKLVRSSGIRRDWSFEDL 91

The following BLAST results are available for this feature:

BLAST of CmoCh19G002520 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh19G002520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEC0	3.5e-31	63.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902280 PE=4 SV=1	[more]
A0A5A7T546	5.8e-26	63.96	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3E5T4	5.8e-26	63.96	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CRL3	5.8e-26	63.96	uncharacterized protein LOC103503546 OS=Cucumis melo OX=3656 GN=LOC103503546 PE=...	[more]
A0A6J1DZN2	7.8e-23	56.00	uncharacterized protein LOC111026067 OS=Momordica charantia OX=3673 GN=LOC111026...	[more]

BLAST of CmoCh19G002520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46770.1	8.8e-11	33.86	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]
AT2G35215.1	2.7e-04	32.29	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	PANTHER	PTHR36019	PLANT/PROTEIN	coord: 1..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G002520.1	CmoCh19G002520.1	mRNA